Ggra10403.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10403.t1
Unique NameGgra10403.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:234486..235019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT137CT
PFAMsDUF4079
Max annot lvl2759|Eukaryota
Evalue9.43e-49
EggNOG OGs2CM9B@1|root,2QPP2@2759|Eukaryota
DescriptionProtein of unknown function (DUF4079)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10403Ggra10403Gracilaria gracilis GNS1m malegenetig00000108_pilon 234486..235019 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10403.t1.start1Ggra10403.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 234486..234488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10403.t1.CDS1Ggra10403.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 234486..235019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10403.t1.exon1Ggra10403.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 234486..235019 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10403.t1.stop1Ggra10403.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 235017..235019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10403.t1Ggra10403.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 234486..235019 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10403.t1 ID=Ggra10403.t1|Name=Ggra10403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MQLPVDVPAQLVLAANPAWLTKVADTIATLNLPKPVVEWGHPAMMAFLVL
GMGAPGAYFGWAGRLNADKKAGVGQKKLHENVMLGFFLLAFLGGVGGTLS
VAMQGYDIWESPHFISAVVVLLMLTINSVLAYSGFTIGTDGTAKGRLQGR
KIHAYFGLATMTAFLVHAVLGALILLG*
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spliced messenger RNA

>Ggra10403.t1 ID=Ggra10403.t1|Name=Ggra10403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000108_pilon:234486..235019+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGCCCGTCGATGTGCCGGCGCAGCTGGTGCTGGCGGCCAATCC
GGCGTGGCTCACCAAGGTAGCCGACACGATCGCCACGCTCAATTTGCCCA
AGCCGGTCGTGGAGTGGGGGCACCCTGCCATGATGGCCTTCCTCGTGCTG
GGCATGGGCGCGCCCGGCGCCTACTTTGGCTGGGCCGGTCGGCTCAACGC
CGACAAGAAGGCGGGCGTGGGTCAGAAGAAGCTGCATGAGAACGTCATGC
TGGGCTTCTTTCTGCTCGCCTTTCTGGGTGGCGTTGGTGGCACCTTGTCG
GTTGCGATGCAGGGTTATGACATTTGGGAATCACCGCATTTCATCTCGGC
CGTCGTCGTTCTGCTCATGCTTACCATCAACTCGGTGTTAGCCTACTCTG
GCTTCACTATTGGAACTGATGGCACGGCGAAGGGCCGTTTGCAGGGACGC
AAAATCCATGCATACTTTGGATTGGCCACTATGACTGCCTTTTTGGTCCA
CGCCGTTCTCGGTGCCTTGATTCTTTTGGGTTAG
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protein sequence of Ggra10403.t1

>Ggra10403.t1 ID=Ggra10403.t1|Name=Ggra10403.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MQLPVDVPAQLVLAANPAWLTKVADTIATLNLPKPVVEWGHPAMMAFLVL
GMGAPGAYFGWAGRLNADKKAGVGQKKLHENVMLGFFLLAFLGGVGGTLS
VAMQGYDIWESPHFISAVVVLLMLTINSVLAYSGFTIGTDGTAKGRLQGR
KIHAYFGLATMTAFLVHAVLGALILLG*
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mRNA from alignment at tig00000108_pilon:234486..235019+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10403.t1 ID=Ggra10403.t1|Name=Ggra10403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000108_pilon:234486..235019+ (Gracilaria gracilis GNS1m male)
ATGCAGCTGCCCGTCGATGTGCCGGCGCAGCTGGTGCTGGCGGCCAATCC
GGCGTGGCTCACCAAGGTAGCCGACACGATCGCCACGCTCAATTTGCCCA
AGCCGGTCGTGGAGTGGGGGCACCCTGCCATGATGGCCTTCCTCGTGCTG
GGCATGGGCGCGCCCGGCGCCTACTTTGGCTGGGCCGGTCGGCTCAACGC
CGACAAGAAGGCGGGCGTGGGTCAGAAGAAGCTGCATGAGAACGTCATGC
TGGGCTTCTTTCTGCTCGCCTTTCTGGGTGGCGTTGGTGGCACCTTGTCG
GTTGCGATGCAGGGTTATGACATTTGGGAATCACCGCATTTCATCTCGGC
CGTCGTCGTTCTGCTCATGCTTACCATCAACTCGGTGTTAGCCTACTCTG
GCTTCACTATTGGAACTGATGGCACGGCGAAGGGCCGTTTGCAGGGACGC
AAAATCCATGCATACTTTGGATTGGCCACTATGACTGCCTTTTTGGTCCA
CGCCGTTCTCGGTGCCTTGATTCTTTTGGGTTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:234486..235019+

>Ggra10403.t1 ID=Ggra10403.t1|Name=Ggra10403.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000108_pilon:234486..235019+ (Gracilaria gracilis GNS1m male)
ATGCAGCTGCCCGTCGATGTGCCGGCGCAGCTGGTGCTGGCGGCCAATCC
GGCGTGGCTCACCAAGGTAGCCGACACGATCGCCACGCTCAATTTGCCCA
AGCCGGTCGTGGAGTGGGGGCACCCTGCCATGATGGCCTTCCTCGTGCTG
GGCATGGGCGCGCCCGGCGCCTACTTTGGCTGGGCCGGTCGGCTCAACGC
CGACAAGAAGGCGGGCGTGGGTCAGAAGAAGCTGCATGAGAACGTCATGC
TGGGCTTCTTTCTGCTCGCCTTTCTGGGTGGCGTTGGTGGCACCTTGTCG
GTTGCGATGCAGGGTTATGACATTTGGGAATCACCGCATTTCATCTCGGC
CGTCGTCGTTCTGCTCATGCTTACCATCAACTCGGTGTTAGCCTACTCTG
GCTTCACTATTGGAACTGATGGCACGGCGAAGGGCCGTTTGCAGGGACGC
AAAATCCATGCATACTTTGGATTGGCCACTATGACTGCCTTTTTGGTCCA
CGCCGTTCTCGGTGCCTTGATTCTTTTGGGTTAG
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