Ggra10289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10289.t1
Unique Name	Ggra10289.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:392028..392804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0266854
PFAMs	Med6
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K15128
GOs	GO:0000428,GO:0001128,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue	1.06e-33
EggNOG OGs	COG5097@1\|root,KOG3169@2759\|Eukaryota,3XAMG@554915\|Amoebozoa
Description	MED6 mediator sub complex component
COG category	K
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10289	Ggra10289	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 392028..392804 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10289.t1.start1	Ggra10289.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 392028..392030 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10289.t1.CDS1	Ggra10289.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 392028..392804 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10289.t1.exon1	Ggra10289.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 392028..392804 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10289.t1.stop1	Ggra10289.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 392802..392804 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10289.t1	Ggra10289.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 392028..392804 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:392028..392804+
coding sequence from alignment at tig00000016_pilon:392028..392804+

mRNA sequence

>Ggra10289.t1 ID=Ggra10289.t1|Name=Ggra10289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MVASSSNMDVEETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDER
CNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLE
PLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQG
KYSWEPPPVSMHEREDNSNAQNGAEVLSSAEKSAIDSMLFDVLERNRQIH
ATHAEKMSAQGEKREDEGVTVPSASATATDTATATATATATAAATGSSHQ
AGTALGGA*

spliced messenger RNA

>Ggra10289.t1 ID=Ggra10289.t1|Name=Ggra10289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000016_pilon:392028..392804+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCATCCTCATCCAACATGGACGTTGAAGAAACTGAGGACCTCAC
AGGTGTTATGTGGCACGACAAGAACTGGTTATCCTACTTTCCTCTCACAA
AGGAACACGTGCTCGAATATTTTTCCCATTCACAGTTCTACGACGAGCGA
TGCAACAACCACCAAATCAAGCTACAACGCTTAGACCCCAAACTGTTGGA
AACCATGGCTGGAATAGAATACCAAGTCACAGCAGATCCTGCTCCGGGTT
TGTTCATCATCACCAAGTTTCTTCGCTCACTTCGACCGCCAAACCTAGAG
CCTTTGGCCATGTACTACGTCTTGGAAGGCGATGTATACCAAGCACCTTC
AGTACATGCCATTCTTTCGTCGCGCATCCTACAATCGTTACGCCATTTGC
GCAAAGCGTTTGAAACCATGCAGAACGCCACTTCTGTATCCAGCCAAGGG
AAGTACTCCTGGGAGCCACCACCGGTTTCTATGCACGAGCGAGAAGACAA
CAGCAACGCGCAGAACGGTGCCGAAGTGCTTTCGAGCGCCGAGAAGAGCG
CCATTGACTCCATGCTGTTCGACGTGCTAGAGAGGAATCGACAAATTCAT
GCTACGCATGCTGAGAAAATGTCCGCTCAAGGAGAGAAACGCGAAGATGA
AGGCGTCACTGTGCCTTCCGCATCGGCGACGGCAACAGATACGGCAACCG
CCACGGCTACCGCTACAGCAACGGCGGCGGCTACCGGAAGCTCGCATCAG
GCTGGTACCGCATTGGGAGGCGCGTAG

protein sequence of Ggra10289.t1

>Ggra10289.t1 ID=Ggra10289.t1|Name=Ggra10289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MVASSSNMDVEETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDER
CNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLE
PLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQG
KYSWEPPPVSMHEREDNSNAQNGAEVLSSAEKSAIDSMLFDVLERNRQIH
ATHAEKMSAQGEKREDEGVTVPSASATATDTATATATATATAAATGSSHQ
AGTALGGA*

mRNA from alignment at tig00000016_pilon:392028..392804+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10289.t1 ID=Ggra10289.t1|Name=Ggra10289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000016_pilon:392028..392804+ (Gracilaria gracilis GNS1m male)
ATGGTCGCATCCTCATCCAACATGGACGTTGAAGAAACTGAGGACCTCAC
AGGTGTTATGTGGCACGACAAGAACTGGTTATCCTACTTTCCTCTCACAA
AGGAACACGTGCTCGAATATTTTTCCCATTCACAGTTCTACGACGAGCGA
TGCAACAACCACCAAATCAAGCTACAACGCTTAGACCCCAAACTGTTGGA
AACCATGGCTGGAATAGAATACCAAGTCACAGCAGATCCTGCTCCGGGTT
TGTTCATCATCACCAAGTTTCTTCGCTCACTTCGACCGCCAAACCTAGAG
CCTTTGGCCATGTACTACGTCTTGGAAGGCGATGTATACCAAGCACCTTC
AGTACATGCCATTCTTTCGTCGCGCATCCTACAATCGTTACGCCATTTGC
GCAAAGCGTTTGAAACCATGCAGAACGCCACTTCTGTATCCAGCCAAGGG
AAGTACTCCTGGGAGCCACCACCGGTTTCTATGCACGAGCGAGAAGACAA
CAGCAACGCGCAGAACGGTGCCGAAGTGCTTTCGAGCGCCGAGAAGAGCG
CCATTGACTCCATGCTGTTCGACGTGCTAGAGAGGAATCGACAAATTCAT
GCTACGCATGCTGAGAAAATGTCCGCTCAAGGAGAGAAACGCGAAGATGA
AGGCGTCACTGTGCCTTCCGCATCGGCGACGGCAACAGATACGGCAACCG
CCACGGCTACCGCTACAGCAACGGCGGCGGCTACCGGAAGCTCGCATCAG
GCTGGTACCGCATTGGGAGGCGCGTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:392028..392804+

>Ggra10289.t1 ID=Ggra10289.t1|Name=Ggra10289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000016_pilon:392028..392804+ (Gracilaria gracilis GNS1m male)
ATGGTCGCATCCTCATCCAACATGGACGTTGAAGAAACTGAGGACCTCAC
AGGTGTTATGTGGCACGACAAGAACTGGTTATCCTACTTTCCTCTCACAA
AGGAACACGTGCTCGAATATTTTTCCCATTCACAGTTCTACGACGAGCGA
TGCAACAACCACCAAATCAAGCTACAACGCTTAGACCCCAAACTGTTGGA
AACCATGGCTGGAATAGAATACCAAGTCACAGCAGATCCTGCTCCGGGTT
TGTTCATCATCACCAAGTTTCTTCGCTCACTTCGACCGCCAAACCTAGAG
CCTTTGGCCATGTACTACGTCTTGGAAGGCGATGTATACCAAGCACCTTC
AGTACATGCCATTCTTTCGTCGCGCATCCTACAATCGTTACGCCATTTGC
GCAAAGCGTTTGAAACCATGCAGAACGCCACTTCTGTATCCAGCCAAGGG
AAGTACTCCTGGGAGCCACCACCGGTTTCTATGCACGAGCGAGAAGACAA
CAGCAACGCGCAGAACGGTGCCGAAGTGCTTTCGAGCGCCGAGAAGAGCG
CCATTGACTCCATGCTGTTCGACGTGCTAGAGAGGAATCGACAAATTCAT
GCTACGCATGCTGAGAAAATGTCCGCTCAAGGAGAGAAACGCGAAGATGA
AGGCGTCACTGTGCCTTCCGCATCGGCGACGGCAACAGATACGGCAACCG
CCACGGCTACCGCTACAGCAACGGCGGCGGCTACCGGAAGCTCGCATCAG
GCTGGTACCGCATTGGGAGGCGCGTAG