Ggra10289.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10289.t1
Unique NameGgra10289.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length259
Homology
BLAST of Ggra10289.t1 vs. uniprot
Match: A0A2V3ILC2 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC2_9FLOR)

HSP 1 Score: 337 bits (863), Expect = 2.120e-114
Identity = 168/214 (78.50%), Postives = 187/214 (87.38%), Query Frame = 0
Query:    1 MVASSSNMDVEETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQGKYSWEPPPVSMHEREDNSNAQNGAEVLSSAEKSAIDSMLFDVLERNRQIHATHAEKMSA-QGEK 213
            MVASSSNM VEETEDLTGVMWHDKNWLS+FPL+K++VLEYFSHSQFYDERCNN QIKLQ LD KLLE+MAGIEYQVTAD APGLF+ITKFLRSL P +LEPLAMYYVL+GDVYQAPSVHAILSSRILQ L HLRKAFETMQNA++VS QG+Y WEP PV ++ERED    + G E+LS AE+S +D MLF+VLERNRQIH  H EKM A QG+K
Sbjct:    1 MVASSSNMAVEETEDLTGVMWHDKNWLSFFPLSKDNVLEYFSHSQFYDERCNNQQIKLQMLDNKLLESMAGIEYQVTADVAPGLFVITKFLRSLSPASLEPLAMYYVLDGDVYQAPSVHAILSSRILQCLHHLRKAFETMQNASTVSVQGQYWWEPSPVGVNEREDVGEGEGGTELLSGAERSGVDGMLFEVLERNRQIHGAHVEKMCASQGDK 214          
BLAST of Ggra10289.t1 vs. uniprot
Match: F4Q2D8 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q2D8_CAVFA)

HSP 1 Score: 139 bits (351), Expect = 8.080e-37
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   12 ETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQGKYS 153
            E EDLT +MW D  WL  FPL +  VL YFS SQFYD++CNN  +K+QRLDP  L+TM GIEYQV     P LF+I +  R   P +++   +YY++ G +YQAP + A+L+SR+ QSL HLR+AF+ + +  +      YS
Sbjct:   19 EVEDLTQIMWRDPLWLQMFPLNQMTVLTYFSMSQFYDKQCNNEILKMQRLDPSALKTMVGIEYQVINYQEPSLFLIARQYRE-SPGDVKVQTLYYIINGSIYQAPDLKAVLTSRLTQSLYHLRQAFDKIGSIVNWDIVNGYS 159          
BLAST of Ggra10289.t1 vs. uniprot
Match: MED6 (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI)

HSP 1 Score: 133 bits (335), Expect = 2.860e-34
Identity = 65/165 (39.39%), Postives = 100/165 (60.61%), Query Frame = 0
Query:    1 MVASSSNMDV-EETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQGKYSWEPPPVSMHER 164
            M++ +S   + EE  DLT VMW D  WL  +PL  + +L+YFS+SQFYD+ CNN Q+K+QRLD   L+ M G+EY++     P  F+I K  R + P ++    +YYV+ G++YQAP +H +  SR+ QS+ HL +AF ++ +  +      YS    P +  E+
Sbjct:   50 MISDTSTPRILEEEPDLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSALKNMDGLEYELIKFVEPSFFLIAKQTR-ISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEK 213          
BLAST of Ggra10289.t1 vs. uniprot
Match: A0A7S3EG92 (Mediator of RNA polymerase II transcription subunit 6 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG92_9RHOD)

HSP 1 Score: 132 bits (333), Expect = 4.540e-34
Identity = 79/214 (36.92%), Postives = 114/214 (53.27%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPA--PGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSV-------------------------SSQGK-YSWEPPPVSMHEREDNSNAQNGAEVLSSAEKSAIDSMLFDVLERNRQI 199
            E LT + W+DK WLSYFPL K+ VLEYF+ S FY+  C N Q K+QRL+    E + GI Y+V  D    P LF+I K  R+     +  LA YY++ G  Y++P  H++L++RI+QS+ HLR AF+ +Q                              S QG  YSW+P   S  +  D+ +    A V    E+  +D +L+ +LERNR++
Sbjct:    4 ESLTSLSWNDKVWLSYFPLDKDTVLEYFARSPFYNRSCLNEQYKMQRLEISAFENVPGILYEVVHDLTNEPLLFVIAKLERAENL-TVRTLAYYYIMNGVAYESPKAHSVLTTRIVQSMYHLRNAFDALQEKVGSHTCLLLRIVIPRRKPPDIQCSVQIPSEQGDWYSWKPSYGSSSDAGDDKDESEAAIV----ERQTVDRLLYGILERNRRV 212          
BLAST of Ggra10289.t1 vs. uniprot
Match: F0ZNV8 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNV8_DICPU)

HSP 1 Score: 132 bits (332), Expect = 9.210e-34
Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 0
Query:   10 VEETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQGKYSWEPPPVSMHERE 165
            +EE  D T VMW D  WL  FPL +  VL YFS+SQFYD+ CNN  +K+QRLDP  L+TM G+EY+V     P  ++I K  R + P ++    +YYV+ G++YQAP +  + +SRI QSL HL +AF  + +  +      YS+   P +  E++
Sbjct:   67 LEEEPDFTQVMWRDPVWLQMFPLNQHTVLTYFSYSQFYDKNCNNETLKMQRLDPAALKTMEGLEYEVAKFVEPSFYLIAKQNR-ISPSDVIIQQLYYVINGNIYQAPDLRQVFTSRISQSLFHLSEAFNKISSIINWDIINGYSFNFDPSNQQEKQ 221          
BLAST of Ggra10289.t1 vs. uniprot
Match: M2XHR9 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHR9_GALSU)

HSP 1 Score: 124 bits (310), Expect = 1.980e-31
Identity = 59/134 (44.03%), Postives = 89/134 (66.42%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVS 147
            EDL  + W D  +L+ FPLT+E VL+YFS S FYD  CNN QI++Q+LDP++L  + G EY VT    P  F++ K  R  R    + L ++Y+++G VYQAPS+ ++L SR+ +S  H+ ++FE++Q A+  S
Sbjct:   10 EDLAHLSWRDNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDPEVLYNLVGTEYMVTNQQEPVFFVVEKVYRYNRE-ETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQASLFS 142          
BLAST of Ggra10289.t1 vs. uniprot
Match: A0A2G5BCP3 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BCP3_COERN)

HSP 1 Score: 113 bits (282), Expect = 1.570e-27
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLSYFP-LTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKL------LETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQGKYSW 154
            +DLT + W    W+  F  L  E+VLEYFS S F+D   NN  +K+Q     L      L+ M G+E+ VT    P LFIITKF RS  P  + P+A YY+L+G+ Y+APS+H+I+S+R+L S++ +  AFE  ++         YSW
Sbjct:    3 KDLTAIEWRSDQWIYQFGGLRPENVLEYFSQSPFWDPSSNNAVLKMQTQFNALQQGSYDLKNMVGVEFAVTHQEPPMLFIITKFRRS-SPTKVTPIAAYYILDGNAYEAPSLHSIVSTRMLSSIKRVENAFEIARSHAVFHPSVGYSW 149          
BLAST of Ggra10289.t1 vs. uniprot
Match: A0A6P8HXC8 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HXC8_ACTTE)

HSP 1 Score: 116 bits (290), Expect = 1.680e-27
Identity = 71/220 (32.27%), Postives = 117/220 (53.18%), Query Frame = 0
Query:    8 MDVEETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSH--SQFYDERCNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQGKYSWEPPPVSMHEREDNSNAQNGAEVLSSAEKSAIDSMLFDVLER-------NRQIHATHAEKMSAQGEKREDEG 218
            M  + TE+  GV WHD  W+    L   +VLEYFS   + FYD  CNN  +K+QRLDP  L++MAGIEY+V     P LF+I K  R     ++ P+A YY+L G VYQAP + ++++SR+L +L +   AF+   + +       Y W+      +     +  +  ++  S  ++  ++ +L ++ +R         Q++ T A   +AQ ++ E+ G
Sbjct:    1 MAADTTENELGVSWHDSAWIPI--LNPANVLEYFSQRTNPFYDRTCNNEVVKMQRLDPSALQSMAGIEYEVIHVQDPILFVIRKQQRHSST-HVTPIADYYILAGIVYQAPDLGSVINSRMLSALHNFESAFKEAVSYSRYHQSKGYWWQFKDSQKNPDSKTTTEKKTSQASSLFQREGVNQLLGELSKRFPPSLIKASQVNTTTAGTATAQSKEAEEPG 217          
BLAST of Ggra10289.t1 vs. uniprot
Match: A0A1Y1HUV0 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUV0_KLENI)

HSP 1 Score: 111 bits (278), Expect = 2.140e-26
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 0
Query:   15 DLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQRLDPKLLETMA-GIEYQVTADPAPGLFIITKFLRSLRPPNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAF 137
            DLTGV++ D  WL  FPL +  VL+YF+ S FYD  CNN ++K Q  D  LL TM  G EY V +   P L++I K LR + P  + PLA YYVL+G +YQAP + A+L SR  +SL +++  F
Sbjct:    7 DLTGVLFSDPLWLQSFPLNRATVLDYFALSPFYDASCNNEKLKAQGKDLSLLSTMPYGPEYVVISAQEPNLYVIRKQLR-VSPDKMVPLAAYYVLDGSIYQAPHLQAVLGSRAERSLYYVQSGF 129          
BLAST of Ggra10289.t1 vs. uniprot
Match: A0A7S4C2Y7 (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C2Y7_CHRCT)

HSP 1 Score: 109 bits (272), Expect = 5.440e-26
Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 0
Query:   16 LTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDERCNNHQIKLQR-LDPKLLETM----AGIEYQV--------TADP-APGLFIITKFLRSLRP---PNLEPLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQ 149
            LT + W DK WL  FPL +  VL+YFSHSQFYD  C N Q+K+QR L  + +E M    +G+EY +        +AD  A  L++I K +R+ RP   P L P   YYVL+G  Y+ PSVHA+LS R+++    L  AFE +  A S   +
Sbjct:   10 LTNISWEDKAWLQAFPLNQTTVLDYFSHSQFYDRTCINEQVKMQRGLTAEDMEDMVVRMSGVEYVLHHAHEVPPSADSTAHSLYVILKQVRTYRPSSTPQLTPDRYYYVLDGVAYEVPSVHAVLSERLMRLGWLLNSAFEGLAAAASAEQK 160          
The following BLAST results are available for this feature:
BLAST of Ggra10289.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILC22.120e-11478.50Mediator of RNA polymerase II transcription subuni... [more]
F4Q2D88.080e-3747.89Mediator of RNA polymerase II transcription subuni... [more]
MED62.860e-3439.39Putative mediator of RNA polymerase II transcripti... [more]
A0A7S3EG924.540e-3436.92Mediator of RNA polymerase II transcription subuni... [more]
F0ZNV89.210e-3442.31Mediator of RNA polymerase II transcription subuni... [more]
M2XHR91.980e-3144.03Mediator of RNA polymerase II transcription subuni... [more]
A0A2G5BCP31.570e-2741.22Mediator of RNA polymerase II transcription subuni... [more]
A0A6P8HXC81.680e-2732.27Mediator of RNA polymerase II transcription subuni... [more]
A0A1Y1HUV02.140e-2647.58Mediator of RNA polymerase II transcription subuni... [more]
A0A7S4C2Y75.440e-2643.05Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 19..145
e-value: 4.5E-38
score: 130.0
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..239
IPR038566Mediator complex, subunit Med6 superfamilyGENE3D3.10.450.580Mediator complex, subunit Med6coord: 11..141
e-value: 2.6E-39
score: 136.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..178
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:392028..392804 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10289.t1Ggra10289.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 392028..392804 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10289.t1 ID=Ggra10289.t1|Name=Ggra10289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MVASSSNMDVEETEDLTGVMWHDKNWLSYFPLTKEHVLEYFSHSQFYDER
CNNHQIKLQRLDPKLLETMAGIEYQVTADPAPGLFIITKFLRSLRPPNLE
PLAMYYVLEGDVYQAPSVHAILSSRILQSLRHLRKAFETMQNATSVSSQG
KYSWEPPPVSMHEREDNSNAQNGAEVLSSAEKSAIDSMLFDVLERNRQIH
ATHAEKMSAQGEKREDEGVTVPSASATATDTATATATATATAAATGSSHQ
AGTALGGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007018Mediator_Med6
IPR038566Mediator_Med6_sf