Ggra10288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10288.t1
Unique NameGgra10288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:389076..389936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706613.1
Preferred nameZPR1
PFAMszf-ZPR1
Max annot lvl2759|Eukaryota
KEGG koko:K06874,ko:K09025
KEGG Pathwayko03320,map03320
GOsGO:0000082,GO:0000083,GO:0000086,GO:0000226,GO:0000278,GO:0001701,GO:0001763,GO:0001824,GO:0001832,GO:0001833,GO:0001834,GO:0002009,GO:0002181,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006401,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007424,GO:0007430,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016604,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021510,GO:0022008,GO:0022402,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030575,GO:0030576,GO:0030971,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031641,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032880,GO:0032991,GO:0033120,GO:0033157,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035295,GO:0036477,GO:0040007,GO:0040008,GO:0042023,GO:0042221,GO:0042306,GO:0042307,GO:0042594,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045893,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0060255,GO:0060341,GO:0060429,GO:0060446,GO:0060541,GO:0060548,GO:0060562,GO:0061138,GO:0061564,GO:0061770,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071363,GO:0071364,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071931,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0097504,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1900180,GO:1900182,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1902742,GO:1903047,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990261,GO:1990782,GO:2000026,GO:2000112,GO:2000671,GO:2000672,GO:2001141
Evalue2.03e-21
EggNOG OGsCOG1779@1|root,KOG2703@2759|Eukaryota
Descriptionpre-mRNA catabolic process
COG categoryZ
BRITEko00000,ko00001,ko00536
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10288Ggra10288Gracilaria gracilis GNS1m malegenetig00000016_pilon 389076..389936 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10288.t1.stop1Ggra10288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 389076..389078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10288.t1.CDS1Ggra10288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 389076..389936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10288.t1.exon1Ggra10288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 389076..389936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10288.t1.start1Ggra10288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 389934..389936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10288.t1Ggra10288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 389076..389936 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10288.t1 ID=Ggra10288.t1|Name=Ggra10288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MAAPALRRDMTVKRSPAHELLPVASLNRASRRSMKSSESPRALRALVLSF
LIAAAALSASFVLFSSIPAHPDTTTTANLLQALRQRETAYQLVSDNVVYD
RYARVYSREVRFPDGKQFAFDVWGRVWKNDSFAVVTVVPFDRKTTTFTLI
REYNIAHARYVYSFPQGQLERAKHKSVHMGAAAELEEEAQLQCDEWVNLL
NGDEGRGAPQDKYQRETVHYFLCTAAHHVDNAADVDDEENIEVVHGVTPS
QLRELAAAGALQSNNIAAALMGIDKLRRLRLLPWSA*
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spliced messenger RNA

>Ggra10288.t1 ID=Ggra10288.t1|Name=Ggra10288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000016_pilon:389076..389936- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCACCTGCGCTGCGCCGCGACATGACGGTGAAGCGCTCTCCGGC
GCACGAGCTGCTGCCGGTGGCATCGCTCAACCGCGCCAGCAGACGATCCA
TGAAGAGCTCCGAGTCTCCGAGGGCTCTCAGAGCGCTTGTGCTGTCGTTT
CTTATCGCTGCCGCCGCGCTCAGTGCGTCCTTTGTGCTGTTCTCTTCAAT
CCCCGCCCATCCTGACACTACCACTACCGCCAACCTACTGCAGGCGCTGC
GACAGCGGGAAACCGCTTACCAACTTGTGTCTGACAATGTCGTGTACGAT
CGCTATGCGAGGGTGTATTCTCGCGAGGTGAGGTTTCCGGATGGAAAGCA
GTTTGCGTTCGATGTTTGGGGAAGGGTGTGGAAGAATGATTCGTTTGCCG
TCGTCACCGTCGTGCCGTTTGATAGAAAGACAACTACCTTTACGCTCATT
CGTGAGTACAACATTGCTCACGCTCGTTATGTGTATAGCTTTCCACAAGG
CCAACTGGAGCGCGCGAAGCACAAGAGCGTGCATATGGGAGCTGCTGCCG
AATTGGAGGAGGAGGCGCAGTTGCAGTGTGATGAATGGGTCAACCTTCTC
AACGGCGACGAAGGCAGAGGTGCTCCACAAGACAAGTATCAACGCGAAAC
TGTACATTACTTTTTGTGTACAGCTGCTCATCACGTGGATAATGCAGCTG
ATGTGGATGACGAAGAGAACATCGAGGTTGTACATGGTGTCACACCATCA
CAGCTTCGAGAGTTGGCTGCAGCTGGTGCTCTACAAAGTAATAATATCGC
TGCGGCTCTTATGGGCATTGACAAGCTAAGGAGGCTCCGTCTGCTCCCGT
GGTCGGCATGA
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protein sequence of Ggra10288.t1

>Ggra10288.t1 ID=Ggra10288.t1|Name=Ggra10288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MAAPALRRDMTVKRSPAHELLPVASLNRASRRSMKSSESPRALRALVLSF
LIAAAALSASFVLFSSIPAHPDTTTTANLLQALRQRETAYQLVSDNVVYD
RYARVYSREVRFPDGKQFAFDVWGRVWKNDSFAVVTVVPFDRKTTTFTLI
REYNIAHARYVYSFPQGQLERAKHKSVHMGAAAELEEEAQLQCDEWVNLL
NGDEGRGAPQDKYQRETVHYFLCTAAHHVDNAADVDDEENIEVVHGVTPS
QLRELAAAGALQSNNIAAALMGIDKLRRLRLLPWSA*
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mRNA from alignment at tig00000016_pilon:389076..389936-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10288.t1 ID=Ggra10288.t1|Name=Ggra10288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000016_pilon:389076..389936- (Gracilaria gracilis GNS1m male)
ATGGCTGCACCTGCGCTGCGCCGCGACATGACGGTGAAGCGCTCTCCGGC
GCACGAGCTGCTGCCGGTGGCATCGCTCAACCGCGCCAGCAGACGATCCA
TGAAGAGCTCCGAGTCTCCGAGGGCTCTCAGAGCGCTTGTGCTGTCGTTT
CTTATCGCTGCCGCCGCGCTCAGTGCGTCCTTTGTGCTGTTCTCTTCAAT
CCCCGCCCATCCTGACACTACCACTACCGCCAACCTACTGCAGGCGCTGC
GACAGCGGGAAACCGCTTACCAACTTGTGTCTGACAATGTCGTGTACGAT
CGCTATGCGAGGGTGTATTCTCGCGAGGTGAGGTTTCCGGATGGAAAGCA
GTTTGCGTTCGATGTTTGGGGAAGGGTGTGGAAGAATGATTCGTTTGCCG
TCGTCACCGTCGTGCCGTTTGATAGAAAGACAACTACCTTTACGCTCATT
CGTGAGTACAACATTGCTCACGCTCGTTATGTGTATAGCTTTCCACAAGG
CCAACTGGAGCGCGCGAAGCACAAGAGCGTGCATATGGGAGCTGCTGCCG
AATTGGAGGAGGAGGCGCAGTTGCAGTGTGATGAATGGGTCAACCTTCTC
AACGGCGACGAAGGCAGAGGTGCTCCACAAGACAAGTATCAACGCGAAAC
TGTACATTACTTTTTGTGTACAGCTGCTCATCACGTGGATAATGCAGCTG
ATGTGGATGACGAAGAGAACATCGAGGTTGTACATGGTGTCACACCATCA
CAGCTTCGAGAGTTGGCTGCAGCTGGTGCTCTACAAAGTAATAATATCGC
TGCGGCTCTTATGGGCATTGACAAGCTAAGGAGGCTCCGTCTGCTCCCGT
GGTCGGCATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:389076..389936-

>Ggra10288.t1 ID=Ggra10288.t1|Name=Ggra10288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000016_pilon:389076..389936- (Gracilaria gracilis GNS1m male)
ATGGCTGCACCTGCGCTGCGCCGCGACATGACGGTGAAGCGCTCTCCGGC
GCACGAGCTGCTGCCGGTGGCATCGCTCAACCGCGCCAGCAGACGATCCA
TGAAGAGCTCCGAGTCTCCGAGGGCTCTCAGAGCGCTTGTGCTGTCGTTT
CTTATCGCTGCCGCCGCGCTCAGTGCGTCCTTTGTGCTGTTCTCTTCAAT
CCCCGCCCATCCTGACACTACCACTACCGCCAACCTACTGCAGGCGCTGC
GACAGCGGGAAACCGCTTACCAACTTGTGTCTGACAATGTCGTGTACGAT
CGCTATGCGAGGGTGTATTCTCGCGAGGTGAGGTTTCCGGATGGAAAGCA
GTTTGCGTTCGATGTTTGGGGAAGGGTGTGGAAGAATGATTCGTTTGCCG
TCGTCACCGTCGTGCCGTTTGATAGAAAGACAACTACCTTTACGCTCATT
CGTGAGTACAACATTGCTCACGCTCGTTATGTGTATAGCTTTCCACAAGG
CCAACTGGAGCGCGCGAAGCACAAGAGCGTGCATATGGGAGCTGCTGCCG
AATTGGAGGAGGAGGCGCAGTTGCAGTGTGATGAATGGGTCAACCTTCTC
AACGGCGACGAAGGCAGAGGTGCTCCACAAGACAAGTATCAACGCGAAAC
TGTACATTACTTTTTGTGTACAGCTGCTCATCACGTGGATAATGCAGCTG
ATGTGGATGACGAAGAGAACATCGAGGTTGTACATGGTGTCACACCATCA
CAGCTTCGAGAGTTGGCTGCAGCTGGTGCTCTACAAAGTAATAATATCGC
TGCGGCTCTTATGGGCATTGACAAGCTAAGGAGGCTCCGTCTGCTCCCGT
GGTCGGCATGA
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