Ggra10216.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10216.t1
Unique Name	Ggra10216.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:118030..119490 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	438753.AZC_3740
Preferred name	MA20_15135
PFAMs	MFS_1
Max annot lvl	28211\|Alphaproteobacteria
KEGG ko	ko:K08177
KEGG TC	2.A.1.11
Evalue	0.000128
EggNOG OGs	COG2271@1\|root,COG2271@2\|Bacteria,1QW8U@1224\|Proteobacteria,2TWTA@28211\|Alphaproteobacteria,3F10N@335928\|Xanthobacteraceae
Description	Major Facilitator Superfamily
COG category	G
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10216	Ggra10216	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 118030..119490 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10216.t1.start1	Ggra10216.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 118030..118032 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10216.t1.CDS1	Ggra10216.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 118030..119490 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10216.t1.exon1	Ggra10216.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 118030..119490 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10216.t1.stop1	Ggra10216.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 119488..119490 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10216.t1	Ggra10216.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 118030..119490 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:118030..119490+
coding sequence from alignment at tig00000016_pilon:118030..119490+

mRNA sequence

>Ggra10216.t1 ID=Ggra10216.t1|Name=Ggra10216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MRLSNWRWLGPVPAAFVLQAVFGLQFANGVFASFLDDAVLTQALGLAALF
VSLGITAFGVLLYYASDHSKYHAVPRAVAVFGSVAVAAQLFVSYGLVNHS
RFIVYLASVLQGTGAGCIYVVSIVVVQDWVPESPALVTGLSLLFGGAGSL
FGIYAFQALVHAMDGAIAAMAVASLAAGMLSVTASMFIERPPERWCPVAE
IFDPHTTMTLKDAHHERRAAGNDPQMRLVEEQSVCYSAIVEFGDDDLLPH
KQKQSESFGRLSCSDILVDPAFALVFVCVFVAAGPGYGFVLSYPLMLHSL
FDMALIDANQMLCYATFFGVVGRLALGLAIDIISSSCSNNHSSANIRGSK
LSNIFIVVLQTVGLALMPLAIRAECAWLFHAAVFAVFVAFNGGAVVAACL
ARDVFAAENSTLAFALLGVAVGVARALFSVLLAACAGVAGKGAYDWYIGW
SVVVSVAGVVGSYFIEASKCVDVDGGNNRVFTDLQV*

spliced messenger RNA

>Ggra10216.t1 ID=Ggra10216.t1|Name=Ggra10216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000016_pilon:118030..119490+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTTTCCAACTGGCGCTGGCTTGGTCCCGTTCCCGCCGCCTTCGT
GCTGCAGGCCGTGTTTGGCCTGCAGTTCGCCAACGGCGTCTTCGCCTCCT
TTCTGGATGACGCCGTGCTCACGCAGGCGCTCGGGCTCGCCGCGCTCTTC
GTGTCGCTGGGAATCACTGCCTTTGGCGTGCTGCTGTACTACGCCTCGGA
CCACTCCAAGTACCATgccgtgccgcgcgccgtcgccgtcttcggctcgg
tcgccgtcgccgcgcAGCTCTTCGTGTCGTACGGGCTGGTGAATCACTCG
CGCTTCATCGTGTACCTCGCTAGCGTGCTGCAGGGCACCGGCGCGGGCTG
CATCTACGTCGTCAGCATCGTGGTCGTGCAAGACTGGGTGCCCGAGTCGC
CCGCGCTCGTCACGGGGCTCAGCCTGCTGTTCGGCGGCGCCGGGTCGCTG
TTCGGCATCTACGCCTTCCAGGCGCTGGTGCACGCCATGGACGGCGCCAT
CGCCGCCATGGCCGTCGCCAGTCTGGCTGCCGGCATGCTTTCGGTCACCG
CCTCCATGTTCATCGAGAGACCGCCCGAACGTTGGTGCCCCGTTGCGGAG
ATTTTCGACCCGCACACCACCATGACGCTCAAGGATGCGCACCATGAACG
ACGCGCCGCTGGCAACGACCCCCAAATGAGGCTTGTAGAGGAGCAGTCTG
TTTGTTATTCCGCCATTGTTGAGTTTGGTGACGACGATTTGTTACCTCAT
AAACAAAAACAATCTGAGTCGTTCGGCAGGTTATCATGTTCTGATATCCT
TGTCGACCCGGCTTTTGCACTCGTGTTTGTGTGCGTGTTTGTTGCGGCGG
GTCCCGGATATGGTTTTGTTCTGTCTTACCCCCTTATGCTACACTCACTG
TTTGACATGGCGCTTATCGACGCCAACCAAATGCTATGCTACGCCACCTT
TTTCGGAGTGGTAGGACGGCTGGCGTTGGGACTGGCTATCGATATCATCT
CTTCCTCTTGCTCTAACAACCACTCTTCGGCTAACATTCGCGGCTCCAAG
CTGAGCAACATTTTTATCGTAGTGCTACAAACCGTGGGGCTGGCGCTGAT
GCCGCTGGCCATCCGCGCCGAGTGCGCGTGGCTGTTCCACGCGGCGGTGT
TCGCGGTGTTTGTGGCGTTCAACGGCGGCGCGGTGGTGGCGGCGTGTCTG
GCGCGCGACGTGTTCGCGGCGGAAAACTCCACGCTGGCGTTCGCGCTGCT
GGGCGTGGCGGTGGGCGTGGCGCGCGCGCTGTTCTCCGTGCTGCTGGCGG
CGTGCGCCGGCGTGGCGGGCAAGGGCGCGTACGACTGGTACATTGGCTGG
TCAGTTGTGGTGTCGGTGGCCGGCGTGGTGGGCTCTTACTTCATCGAAGC
CTCAAAGTGCGTGGACGTAGACGGGGGAAACAACCGCGTCTTCACGGACT
TGCAGGTGTAA

protein sequence of Ggra10216.t1

>Ggra10216.t1 ID=Ggra10216.t1|Name=Ggra10216.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MRLSNWRWLGPVPAAFVLQAVFGLQFANGVFASFLDDAVLTQALGLAALF
VSLGITAFGVLLYYASDHSKYHAVPRAVAVFGSVAVAAQLFVSYGLVNHS
RFIVYLASVLQGTGAGCIYVVSIVVVQDWVPESPALVTGLSLLFGGAGSL
FGIYAFQALVHAMDGAIAAMAVASLAAGMLSVTASMFIERPPERWCPVAE
IFDPHTTMTLKDAHHERRAAGNDPQMRLVEEQSVCYSAIVEFGDDDLLPH
KQKQSESFGRLSCSDILVDPAFALVFVCVFVAAGPGYGFVLSYPLMLHSL
FDMALIDANQMLCYATFFGVVGRLALGLAIDIISSSCSNNHSSANIRGSK
LSNIFIVVLQTVGLALMPLAIRAECAWLFHAAVFAVFVAFNGGAVVAACL
ARDVFAAENSTLAFALLGVAVGVARALFSVLLAACAGVAGKGAYDWYIGW
SVVVSVAGVVGSYFIEASKCVDVDGGNNRVFTDLQV*

mRNA from alignment at tig00000016_pilon:118030..119490+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10216.t1 ID=Ggra10216.t1|Name=Ggra10216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000016_pilon:118030..119490+ (Gracilaria gracilis GNS1m male)
ATGCGCCTTTCCAACTGGCGCTGGCTTGGTCCCGTTCCCGCCGCCTTCGT
GCTGCAGGCCGTGTTTGGCCTGCAGTTCGCCAACGGCGTCTTCGCCTCCT
TTCTGGATGACGCCGTGCTCACGCAGGCGCTCGGGCTCGCCGCGCTCTTC
GTGTCGCTGGGAATCACTGCCTTTGGCGTGCTGCTGTACTACGCCTCGGA
CCACTCCAAGTACCATgccgtgccgcgcgccgtcgccgtcttcggctcgg
tcgccgtcgccgcgcAGCTCTTCGTGTCGTACGGGCTGGTGAATCACTCG
CGCTTCATCGTGTACCTCGCTAGCGTGCTGCAGGGCACCGGCGCGGGCTG
CATCTACGTCGTCAGCATCGTGGTCGTGCAAGACTGGGTGCCCGAGTCGC
CCGCGCTCGTCACGGGGCTCAGCCTGCTGTTCGGCGGCGCCGGGTCGCTG
TTCGGCATCTACGCCTTCCAGGCGCTGGTGCACGCCATGGACGGCGCCAT
CGCCGCCATGGCCGTCGCCAGTCTGGCTGCCGGCATGCTTTCGGTCACCG
CCTCCATGTTCATCGAGAGACCGCCCGAACGTTGGTGCCCCGTTGCGGAG
ATTTTCGACCCGCACACCACCATGACGCTCAAGGATGCGCACCATGAACG
ACGCGCCGCTGGCAACGACCCCCAAATGAGGCTTGTAGAGGAGCAGTCTG
TTTGTTATTCCGCCATTGTTGAGTTTGGTGACGACGATTTGTTACCTCAT
AAACAAAAACAATCTGAGTCGTTCGGCAGGTTATCATGTTCTGATATCCT
TGTCGACCCGGCTTTTGCACTCGTGTTTGTGTGCGTGTTTGTTGCGGCGG
GTCCCGGATATGGTTTTGTTCTGTCTTACCCCCTTATGCTACACTCACTG
TTTGACATGGCGCTTATCGACGCCAACCAAATGCTATGCTACGCCACCTT
TTTCGGAGTGGTAGGACGGCTGGCGTTGGGACTGGCTATCGATATCATCT
CTTCCTCTTGCTCTAACAACCACTCTTCGGCTAACATTCGCGGCTCCAAG
CTGAGCAACATTTTTATCGTAGTGCTACAAACCGTGGGGCTGGCGCTGAT
GCCGCTGGCCATCCGCGCCGAGTGCGCGTGGCTGTTCCACGCGGCGGTGT
TCGCGGTGTTTGTGGCGTTCAACGGCGGCGCGGTGGTGGCGGCGTGTCTG
GCGCGCGACGTGTTCGCGGCGGAAAACTCCACGCTGGCGTTCGCGCTGCT
GGGCGTGGCGGTGGGCGTGGCGCGCGCGCTGTTCTCCGTGCTGCTGGCGG
CGTGCGCCGGCGTGGCGGGCAAGGGCGCGTACGACTGGTACATTGGCTGG
TCAGTTGTGGTGTCGGTGGCCGGCGTGGTGGGCTCTTACTTCATCGAAGC
CTCAAAGTGCGTGGACGTAGACGGGGGAAACAACCGCGTCTTCACGGACT
TGCAGGTGTAA

Coding sequence (CDS) from alignment at tig00000016_pilon:118030..119490+

>Ggra10216.t1 ID=Ggra10216.t1|Name=Ggra10216.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000016_pilon:118030..119490+ (Gracilaria gracilis GNS1m male)
ATGCGCCTTTCCAACTGGCGCTGGCTTGGTCCCGTTCCCGCCGCCTTCGT
GCTGCAGGCCGTGTTTGGCCTGCAGTTCGCCAACGGCGTCTTCGCCTCCT
TTCTGGATGACGCCGTGCTCACGCAGGCGCTCGGGCTCGCCGCGCTCTTC
GTGTCGCTGGGAATCACTGCCTTTGGCGTGCTGCTGTACTACGCCTCGGA
CCACTCCAAGTACCATgccgtgccgcgcgccgtcgccgtcttcggctcgg
tcgccgtcgccgcgcAGCTCTTCGTGTCGTACGGGCTGGTGAATCACTCG
CGCTTCATCGTGTACCTCGCTAGCGTGCTGCAGGGCACCGGCGCGGGCTG
CATCTACGTCGTCAGCATCGTGGTCGTGCAAGACTGGGTGCCCGAGTCGC
CCGCGCTCGTCACGGGGCTCAGCCTGCTGTTCGGCGGCGCCGGGTCGCTG
TTCGGCATCTACGCCTTCCAGGCGCTGGTGCACGCCATGGACGGCGCCAT
CGCCGCCATGGCCGTCGCCAGTCTGGCTGCCGGCATGCTTTCGGTCACCG
CCTCCATGTTCATCGAGAGACCGCCCGAACGTTGGTGCCCCGTTGCGGAG
ATTTTCGACCCGCACACCACCATGACGCTCAAGGATGCGCACCATGAACG
ACGCGCCGCTGGCAACGACCCCCAAATGAGGCTTGTAGAGGAGCAGTCTG
TTTGTTATTCCGCCATTGTTGAGTTTGGTGACGACGATTTGTTACCTCAT
AAACAAAAACAATCTGAGTCGTTCGGCAGGTTATCATGTTCTGATATCCT
TGTCGACCCGGCTTTTGCACTCGTGTTTGTGTGCGTGTTTGTTGCGGCGG
GTCCCGGATATGGTTTTGTTCTGTCTTACCCCCTTATGCTACACTCACTG
TTTGACATGGCGCTTATCGACGCCAACCAAATGCTATGCTACGCCACCTT
TTTCGGAGTGGTAGGACGGCTGGCGTTGGGACTGGCTATCGATATCATCT
CTTCCTCTTGCTCTAACAACCACTCTTCGGCTAACATTCGCGGCTCCAAG
CTGAGCAACATTTTTATCGTAGTGCTACAAACCGTGGGGCTGGCGCTGAT
GCCGCTGGCCATCCGCGCCGAGTGCGCGTGGCTGTTCCACGCGGCGGTGT
TCGCGGTGTTTGTGGCGTTCAACGGCGGCGCGGTGGTGGCGGCGTGTCTG
GCGCGCGACGTGTTCGCGGCGGAAAACTCCACGCTGGCGTTCGCGCTGCT
GGGCGTGGCGGTGGGCGTGGCGCGCGCGCTGTTCTCCGTGCTGCTGGCGG
CGTGCGCCGGCGTGGCGGGCAAGGGCGCGTACGACTGGTACATTGGCTGG
TCAGTTGTGGTGTCGGTGGCCGGCGTGGTGGGCTCTTACTTCATCGAAGC
CTCAAAGTGCGTGGACGTAGACGGGGGAAACAACCGCGTCTTCACGGACT
TGCAGGTGTAA