Ggra10185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10185.t1
Unique NameGgra10185.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:37708..38118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706422.1
Preferred nameSNRPC
PFAMszf-U1
Max annot lvl2759|Eukaryota
KEGG koko:K11095
KEGG Pathwayko03040,map03040
KEGG ModuleM00351
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030627,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0042802,GO:0042803,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990446,GO:1990904
Evalue7.64e-30
EggNOG OGsCOG5136@1|root,KOG3454@2759|Eukaryota
Descriptionpre-mRNA 5'-splice site binding
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10185Ggra10185Gracilaria gracilis GNS1m malegenetig00000016_pilon 37708..38118 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10185.t1.start1Ggra10185.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 37708..37710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10185.t1.CDS1Ggra10185.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 37708..38118 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10185.t1.exon1Ggra10185.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 37708..38118 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10185.t1.stop1Ggra10185.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 38116..38118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10185.t1Ggra10185.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 37708..38118 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10185.t1 ID=Ggra10185.t1|Name=Ggra10185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQI
DQIVQQFEINVAAGLIRPTYGLPPAVKAHMVLQNAPNTNGNPDATDAPQD
THAVDQQRNATHHPPPQPPQPPVAHPNTAQNATPAE*
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spliced messenger RNA

>Ggra10185.t1 ID=Ggra10185.t1|Name=Ggra10185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000016_pilon:37708..38118+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAATGCTACTGCGACTACTGCGACGTCTTCCTCACCAACGACTC
GGTCGCCGTCCGCAAGCAGCACAACGAAGGAAACCGCCACAAGTACAACG
TGTGCGAGTATTATCGCCAGTACATTGGCGAGCAGCTGCAGAAGCAGATT
GATCAAATCGTACAACAGTTTGAAATCAACGTCGCTGCCGGGTTGATCCG
ACCCACTTATGGACTGCCGCCTGCCGTCAAGGCTCACATGGTGCTTCAAA
ACGCACCCAACACTAACGGCAACCCGGACGCCACTGACGCGCCGCAAGAC
ACCCACGCCGTTGACCAGCAGCGAAATGCTACACACCATCCGCCGCCTCA
GCCACCGCAACCGCCTGTAGCGCATCCCAATACCGCGCAAAACGCCACTC
CCGCCGAGTGA
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protein sequence of Ggra10185.t1

>Ggra10185.t1 ID=Ggra10185.t1|Name=Ggra10185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQI
DQIVQQFEINVAAGLIRPTYGLPPAVKAHMVLQNAPNTNGNPDATDAPQD
THAVDQQRNATHHPPPQPPQPPVAHPNTAQNATPAE*
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mRNA from alignment at tig00000016_pilon:37708..38118+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10185.t1 ID=Ggra10185.t1|Name=Ggra10185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000016_pilon:37708..38118+ (Gracilaria gracilis GNS1m male)
ATGGGCAAATGCTACTGCGACTACTGCGACGTCTTCCTCACCAACGACTC
GGTCGCCGTCCGCAAGCAGCACAACGAAGGAAACCGCCACAAGTACAACG
TGTGCGAGTATTATCGCCAGTACATTGGCGAGCAGCTGCAGAAGCAGATT
GATCAAATCGTACAACAGTTTGAAATCAACGTCGCTGCCGGGTTGATCCG
ACCCACTTATGGACTGCCGCCTGCCGTCAAGGCTCACATGGTGCTTCAAA
ACGCACCCAACACTAACGGCAACCCGGACGCCACTGACGCGCCGCAAGAC
ACCCACGCCGTTGACCAGCAGCGAAATGCTACACACCATCCGCCGCCTCA
GCCACCGCAACCGCCTGTAGCGCATCCCAATACCGCGCAAAACGCCACTC
CCGCCGAGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:37708..38118+

>Ggra10185.t1 ID=Ggra10185.t1|Name=Ggra10185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000016_pilon:37708..38118+ (Gracilaria gracilis GNS1m male)
ATGGGCAAATGCTACTGCGACTACTGCGACGTCTTCCTCACCAACGACTC
GGTCGCCGTCCGCAAGCAGCACAACGAAGGAAACCGCCACAAGTACAACG
TGTGCGAGTATTATCGCCAGTACATTGGCGAGCAGCTGCAGAAGCAGATT
GATCAAATCGTACAACAGTTTGAAATCAACGTCGCTGCCGGGTTGATCCG
ACCCACTTATGGACTGCCGCCTGCCGTCAAGGCTCACATGGTGCTTCAAA
ACGCACCCAACACTAACGGCAACCCGGACGCCACTGACGCGCCGCAAGAC
ACCCACGCCGTTGACCAGCAGCGAAATGCTACACACCATCCGCCGCCTCA
GCCACCGCAACCGCCTGTAGCGCATCCCAATACCGCGCAAAACGCCACTC
CCGCCGAGTGA
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