Ggra10185.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10185.t1
Unique NameGgra10185.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Homology
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A2V3IH51 (U1 small nuclear ribonucleoprotein C-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH51_9FLOR)

HSP 1 Score: 139 bits (351), Expect = 2.020e-39
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLIRPTYGLPPAVK 77
            MGKCYCDYCDVFLTNDSVAVRKQHN+GNRHKYNVCEYYRQYIG +LQ+QID IVQQFE +VA GL+  TY LPP  K
Sbjct:    1 MGKCYCDYCDVFLTNDSVAVRKQHNDGNRHKYNVCEYYRQYIGHRLQRQIDAIVQQFEADVANGLVHATYALPPIAK 77          
BLAST of Ggra10185.t1 vs. uniprot
Match: M2XIJ0 (U1 small nuclear ribonucleoprotein C n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XIJ0_GALSU)

HSP 1 Score: 113 bits (282), Expect = 1.090e-29
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLIRPTYGLPPAVKAHMVL 82
            MGK YCDYCDV+LT+DS AVRKQHN+GNRH+ N  EYYRQ+IGE LQ+QID +V  FE  VA GL+ PTYG    V++   L
Sbjct:    1 MGKYYCDYCDVYLTHDSPAVRKQHNDGNRHRMNFAEYYRQFIGESLQQQIDAVVYDFERRVALGLVVPTYGFATTVQSSSTL 82          
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A7S2ZQ39 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZQ39_9RHOD)

HSP 1 Score: 111 bits (277), Expect = 6.870e-28
Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLIRPTYGLPPA 75
            MGK YCDYCDV+LT+DS AVRKQHN+GNRHK   CEYY++Y+G++ QK+ID+++++FE+ V +GL+ PT+G   A
Sbjct:  111 MGKYYCDYCDVYLTHDSPAVRKQHNDGNRHKQAACEYYKEYVGKRTQKEIDRVIEEFEVKVMSGLVVPTFGFAEA 185          
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A7S0G6I6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G6I6_9RHOD)

HSP 1 Score: 110 bits (275), Expect = 8.950e-28
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLIRPTYGLPPA 75
            MGK YCDYCDV+LT+DS AVRKQHN+GNRHK   CEYY++Y+G++ QK+ID+++ +FE+ V +GL+ PT+G   A
Sbjct:   34 MGKYYCDYCDVYLTHDSPAVRKQHNDGNRHKQAACEYYKEYVGKRTQKEIDRVIDEFEVKVMSGLVVPTFGFAEA 108          
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A6A5HLE2 (U1 small nuclear ribonucleoprotein C n=4 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A6A5HLE2_CAERE)

HSP 1 Score: 73.9 bits (180), Expect = 2.700e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLI-RPTYGLP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q QK +DQ  Q F+ N   G I R T G+P
Sbjct:    1 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLEAQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 74          
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A2P4VXM5 (U1 small nuclear ribonucleoprotein C n=3 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A2P4VXM5_CAERE)

HSP 1 Score: 73.9 bits (180), Expect = 9.570e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLI-RPTYGLP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q QK +DQ  Q F+ N   G I R T G+P
Sbjct:   58 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLEAQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 131          
BLAST of Ggra10185.t1 vs. uniprot
Match: E3NE30 (U1 small nuclear ribonucleoprotein C n=2 Tax=Caenorhabditis remanei TaxID=31234 RepID=E3NE30_CAERE)

HSP 1 Score: 74.3 bits (181), Expect = 1.070e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLI-RPTYGLP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q QK +DQ  Q F+ N   G I R T G+P
Sbjct:   82 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLESQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 155          
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A0K9RRF2 (U1 small nuclear ribonucleoprotein C n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RRF2_SPIOL)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-13
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQ-------FEINVAAGLIRPTYGLPPAVKAHMVL 82
            M + YCDYCD +LT+DS +VRKQHNEG +HK NV  YY+Q+  +Q Q  IDQ +++       F+I  A    RP +  PP + A + +
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNEGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSGQGAFQIGAAYAAWRPGFR-PPLLPAPLPI 88          
BLAST of Ggra10185.t1 vs. uniprot
Match: A0A261BXD1 (Matrin-type domain-containing protein (Fragment) n=1 Tax=Caenorhabditis latens TaxID=1503980 RepID=A0A261BXD1_9PELO)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFEINVAAGLI-RPTYGLP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q QK +DQ  Q F+ N   G I R T G+P
Sbjct:   77 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLEAQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 150          
BLAST of Ggra10185.t1 vs. uniprot
Match: I0YJG7 (U1 small nuclear ribonucleoprotein C n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YJG7_COCSC)

HSP 1 Score: 68.6 bits (166), Expect = 3.340e-12
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQIDQIVQQFE 58
            M + YCDYCD +LT+DS  VRKQHN+G +HK NV  YY Q+   Q Q  ID  + +FE
Sbjct:    1 MTRYYCDYCDTYLTHDSPVVRKQHNDGYKHKANVRNYYMQFEESQTQSLIDSKIMEFE 58          
The following BLAST results are available for this feature:
BLAST of Ggra10185.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH512.020e-3981.82U1 small nuclear ribonucleoprotein C-2 n=1 Tax=Gra... [more]
M2XIJ01.090e-2963.41U1 small nuclear ribonucleoprotein C n=1 Tax=Galdi... [more]
A0A7S2ZQ396.870e-2860.00Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0G6I68.950e-2860.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A6A5HLE22.700e-1450.00U1 small nuclear ribonucleoprotein C n=4 Tax=Caeno... [more]
A0A2P4VXM59.570e-1450.00U1 small nuclear ribonucleoprotein C n=3 Tax=Caeno... [more]
E3NE301.070e-1350.00U1 small nuclear ribonucleoprotein C n=2 Tax=Caeno... [more]
A0A0K9RRF21.240e-1343.82U1 small nuclear ribonucleoprotein C n=1 Tax=Spina... [more]
A0A261BXD11.370e-1350.00Matrin-type domain-containing protein (Fragment) n... [more]
I0YJG73.340e-1253.45U1 small nuclear ribonucleoprotein C n=1 Tax=Cocco... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 3.1E-8
score: 43.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..60
e-value: 2.1E-22
score: 80.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..111
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 9.1E-15
score: 54.2
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..136
e-value: 5.8E-28
score: 97.2
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..130
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 10.72974
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:37708..38118 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10185.t1Ggra10185.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 37708..38118 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10185.t1 ID=Ggra10185.t1|Name=Ggra10185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKYNVCEYYRQYIGEQLQKQI
DQIVQQFEINVAAGLIRPTYGLPPAVKAHMVLQNAPNTNGNPDATDAPQD
THAVDQQRNATHHPPPQPPQPPVAHPNTAQNATPAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR017340U1_snRNP-C
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf