Ggra10018.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10018.t1
Unique NameGgra10018.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:75556..76581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10018Ggra10018Gracilaria gracilis GNS1m malegenetig00000222_pilon 75556..76581 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10018.t1.start1Ggra10018.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 75556..75558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10018.t1.CDS1Ggra10018.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 75556..76581 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10018.t1.exon1Ggra10018.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 75556..76581 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10018.t1.stop1Ggra10018.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 76579..76581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10018.t1Ggra10018.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 75556..76581 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10018.t1 ID=Ggra10018.t1|Name=Ggra10018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MAPVMNSEEVNFNYYQEEDELWMRKVLDLIPRSLYGRPNSVKEKVGKSSK
GDTQEAKKSSKPKKKNRRRKKEERARLDLANESEERKELREKLRQKIMDK
RNERKADDDKSIQIRKERKRKREEAKADKAKKRKKEKRDKSKADKPSTEE
EDQPPELNEIDPIENTRHELKSSEPTMETTRLSGFASDDDKPRKPKRRKM
TDKKLNELQKQLEIATKEKEDKDLVSRKGTKDRPKPEAKGSSNSASGEEI
SERVKEREVEKAIQRVRGDSVKDDVGKIRKSIRKEKRKHEKSKEDWAKRV
KAVEDEKRSRQEQREKNLKERKESRAAGKKRKVGKHSKKKR*
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spliced messenger RNA

>Ggra10018.t1 ID=Ggra10018.t1|Name=Ggra10018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000222_pilon:75556..76581+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCAGTAATGAACTCAGAAGAAGTTAATTTCAACTACTATCAGGA
GGAAGACGAGCTGTGGATGCGAAAGGTTCTGGATTTGATCCCAAGGTCTC
TCTACGGCCGTCCAAACTCCGTGAAGGAGAAAGTCGGCAAATCGTCAAAA
GGAGATACTCAAGAGGCGAAGAAGTCCTCCAAGCCTAAAAAGAAAAACAG
AAGACGTAAAAAAGAAGAGCGCGCACGGCTTGACTTAGCAAATGAAAGCG
AGGAACGGAAGGAGTTGAGAGAGAAGCTAAGGCAGAAGATTATGGACAAG
AGGAACGAGAGAAAAGCTGATGATGACAAAAGCATACAGATTCGCAAGGA
AAGGAAACGGAAACGGGAGGAGGCAAAAGCTGATAAAGCGAAGAAGAGAA
AGAAGGAAAAACGAGATAAATCTAAGGCAGACAAGCCATCTACTGAAGAG
GAGGACCAACCCCCAGAACTCAATGAAATAGATCCTATCGAAAACACCCG
ACATGAACTGAAGTCTTCAGAACCTACTATGGAGACCACTAGACTGTCTG
GGTTTGCGTCTGATGACGATAAACCACGTAAACCAAAGCGACGAAAGATG
ACTGACAAGAAGCTTAACGAGCTTCAGAAGCAGCTTGAAATCGCGACTAA
GGAAAAAGAGGATAAAGATCTAGTGAGCAGAAAAGGCACAAAAGATAGAC
CAAAGCCTGAAGCAAAGGGGAGTTCGAATTCTGCGTCCGGTGAGGAGATT
TCAGAGAGAGTGAAAGAGCGAGAGGTGGAGAAGGCCATTCAACGAGTGCG
GGGTGATTCTGTAAAGGATGATGTAGGCAAGATCAGAAAATCTATTCgaa
aggaaaagagaaagcatgagaagagcaaagaggattgggcaaagagaGTA
AAAGCCGTTGAAGATGAAAAGCGTTCCAGGCAAGAACAAAGGGAGAAAAA
CTTGAAAGAACGTAAGGAAAGCAGGGCTGCAGGCAAGAAGAGAAAAGTGG
GAAAACATAGTAAGAAGAAAAGGTAG
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protein sequence of Ggra10018.t1

>Ggra10018.t1 ID=Ggra10018.t1|Name=Ggra10018.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MAPVMNSEEVNFNYYQEEDELWMRKVLDLIPRSLYGRPNSVKEKVGKSSK
GDTQEAKKSSKPKKKNRRRKKEERARLDLANESEERKELREKLRQKIMDK
RNERKADDDKSIQIRKERKRKREEAKADKAKKRKKEKRDKSKADKPSTEE
EDQPPELNEIDPIENTRHELKSSEPTMETTRLSGFASDDDKPRKPKRRKM
TDKKLNELQKQLEIATKEKEDKDLVSRKGTKDRPKPEAKGSSNSASGEEI
SERVKEREVEKAIQRVRGDSVKDDVGKIRKSIRKEKRKHEKSKEDWAKRV
KAVEDEKRSRQEQREKNLKERKESRAAGKKRKVGKHSKKKR*
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mRNA from alignment at tig00000222_pilon:75556..76581+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10018.t1 ID=Ggra10018.t1|Name=Ggra10018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000222_pilon:75556..76581+ (Gracilaria gracilis GNS1m male)
ATGGCCCCAGTAATGAACTCAGAAGAAGTTAATTTCAACTACTATCAGGA
GGAAGACGAGCTGTGGATGCGAAAGGTTCTGGATTTGATCCCAAGGTCTC
TCTACGGCCGTCCAAACTCCGTGAAGGAGAAAGTCGGCAAATCGTCAAAA
GGAGATACTCAAGAGGCGAAGAAGTCCTCCAAGCCTAAAAAGAAAAACAG
AAGACGTAAAAAAGAAGAGCGCGCACGGCTTGACTTAGCAAATGAAAGCG
AGGAACGGAAGGAGTTGAGAGAGAAGCTAAGGCAGAAGATTATGGACAAG
AGGAACGAGAGAAAAGCTGATGATGACAAAAGCATACAGATTCGCAAGGA
AAGGAAACGGAAACGGGAGGAGGCAAAAGCTGATAAAGCGAAGAAGAGAA
AGAAGGAAAAACGAGATAAATCTAAGGCAGACAAGCCATCTACTGAAGAG
GAGGACCAACCCCCAGAACTCAATGAAATAGATCCTATCGAAAACACCCG
ACATGAACTGAAGTCTTCAGAACCTACTATGGAGACCACTAGACTGTCTG
GGTTTGCGTCTGATGACGATAAACCACGTAAACCAAAGCGACGAAAGATG
ACTGACAAGAAGCTTAACGAGCTTCAGAAGCAGCTTGAAATCGCGACTAA
GGAAAAAGAGGATAAAGATCTAGTGAGCAGAAAAGGCACAAAAGATAGAC
CAAAGCCTGAAGCAAAGGGGAGTTCGAATTCTGCGTCCGGTGAGGAGATT
TCAGAGAGAGTGAAAGAGCGAGAGGTGGAGAAGGCCATTCAACGAGTGCG
GGGTGATTCTGTAAAGGATGATGTAGGCAAGATCAGAAAATCTATTCgaa
aggaaaagagaaagcatgagaagagcaaagaggattgggcaaagagaGTA
AAAGCCGTTGAAGATGAAAAGCGTTCCAGGCAAGAACAAAGGGAGAAAAA
CTTGAAAGAACGTAAGGAAAGCAGGGCTGCAGGCAAGAAGAGAAAAGTGG
GAAAACATAGTAAGAAGAAAAGGTAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:75556..76581+

>Ggra10018.t1 ID=Ggra10018.t1|Name=Ggra10018.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000222_pilon:75556..76581+ (Gracilaria gracilis GNS1m male)
ATGGCCCCAGTAATGAACTCAGAAGAAGTTAATTTCAACTACTATCAGGA
GGAAGACGAGCTGTGGATGCGAAAGGTTCTGGATTTGATCCCAAGGTCTC
TCTACGGCCGTCCAAACTCCGTGAAGGAGAAAGTCGGCAAATCGTCAAAA
GGAGATACTCAAGAGGCGAAGAAGTCCTCCAAGCCTAAAAAGAAAAACAG
AAGACGTAAAAAAGAAGAGCGCGCACGGCTTGACTTAGCAAATGAAAGCG
AGGAACGGAAGGAGTTGAGAGAGAAGCTAAGGCAGAAGATTATGGACAAG
AGGAACGAGAGAAAAGCTGATGATGACAAAAGCATACAGATTCGCAAGGA
AAGGAAACGGAAACGGGAGGAGGCAAAAGCTGATAAAGCGAAGAAGAGAA
AGAAGGAAAAACGAGATAAATCTAAGGCAGACAAGCCATCTACTGAAGAG
GAGGACCAACCCCCAGAACTCAATGAAATAGATCCTATCGAAAACACCCG
ACATGAACTGAAGTCTTCAGAACCTACTATGGAGACCACTAGACTGTCTG
GGTTTGCGTCTGATGACGATAAACCACGTAAACCAAAGCGACGAAAGATG
ACTGACAAGAAGCTTAACGAGCTTCAGAAGCAGCTTGAAATCGCGACTAA
GGAAAAAGAGGATAAAGATCTAGTGAGCAGAAAAGGCACAAAAGATAGAC
CAAAGCCTGAAGCAAAGGGGAGTTCGAATTCTGCGTCCGGTGAGGAGATT
TCAGAGAGAGTGAAAGAGCGAGAGGTGGAGAAGGCCATTCAACGAGTGCG
GGGTGATTCTGTAAAGGATGATGTAGGCAAGATCAGAAAATCTATTCgaa
aggaaaagagaaagcatgagaagagcaaagaggattgggcaaagagaGTA
AAAGCCGTTGAAGATGAAAAGCGTTCCAGGCAAGAACAAAGGGAGAAAAA
CTTGAAAGAACGTAAGGAAAGCAGGGCTGCAGGCAAGAAGAGAAAAGTGG
GAAAACATAGTAAGAAGAAAAGGTAG
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