Ggra10009.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10009.t1
Unique NameGgra10009.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length668
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:47583..49857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10009Ggra10009Gracilaria gracilis GNS1m malegenetig00000222_pilon 47583..49857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10009.t1Ggra10009.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 47583..49857 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10009.t1.start1Ggra10009.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 47583..47585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10009.t1.CDS1Ggra10009.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 47583..49080 +
Ggra10009.t1.CDS2Ggra10009.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 49130..49136 +
Ggra10009.t1.CDS3Ggra10009.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000222_pilon 49199..49589 +
Ggra10009.t1.CDS4Ggra10009.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000222_pilon 49673..49745 +
Ggra10009.t1.CDS5Ggra10009.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000222_pilon 49823..49857 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10009.t1.exon1Ggra10009.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 47583..49080 +
Ggra10009.t1.exon2Ggra10009.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 49130..49136 +
Ggra10009.t1.exon3Ggra10009.t1.exon3Gracilaria gracilis GNS1m maleexontig00000222_pilon 49199..49589 +
Ggra10009.t1.exon4Ggra10009.t1.exon4Gracilaria gracilis GNS1m maleexontig00000222_pilon 49673..49745 +
Ggra10009.t1.exon5Ggra10009.t1.exon5Gracilaria gracilis GNS1m maleexontig00000222_pilon 49823..49857 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10009.t1.intron1Ggra10009.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 49081..49129 +
Ggra10009.t1.intron2Ggra10009.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000222_pilon 49137..49198 +
Ggra10009.t1.intron3Ggra10009.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000222_pilon 49590..49672 +
Ggra10009.t1.intron4Ggra10009.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000222_pilon 49746..49822 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10009.t1.stop1Ggra10009.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 49855..49857 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10009.t1 ID=Ggra10009.t1|Name=Ggra10009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=668bp
MASGPLPDRDMDDDDEFEWQQIAEMMNVIEQEYKDARNSFGSEPNAPSPA
DHGNPFNSNATPLAPPRALQPVPNLQQNTVPHNTGDAVPQVQEPRFQGIP
QAQNGLHAKAPNIQSSNMAPISLVAQPVVSNAMSDTQAAQGRPVADVSEL
QGLVEQQRGSLANHQNRMQAMQAELDSLRALDVEKMRTENTRLTAALTAA
TQESARLQEQLSYAKQELSSLRDRRRVEAVAMSHDAEGTQQATSQGTGTQ
VPGTQPPASQAPAPQAPGTQMITRIRRNVPSSSQRPPLGKSLRRPRALDL
RTSARTESKENGTPASEKASEPRKTNQGLQRVEPRTASWQLELHDSMNNT
TKAALREHLFSGTTGPSLWELARVAGQEHLREAMLAGISNDEEWPSLLEP
LSDVLNAGRGAALISLHCTYGLLVYSDQCRRNIEALLAITGNMTETLKGA
AKRVDFEIADKCLQVLRVMFDAVVINGSEEQLTHFRTQVFGDVVLNWTRP
QSSPCDDELRVLEETLTAASDVLRAERYPPQSALAILTSAACHAPSTIDE
NGVAALADACVHAIQTLRVSDWCSQEQKDKLGWKEDIVSHVRERKKLAGF
VRGCIATLALVARTRNLVLRKSERNVVLGVLSDGLDGVSKKRGYLSELEW
RHLLLLQRQKLCRPFIP*
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spliced messenger RNA

>Ggra10009.t1 ID=Ggra10009.t1|Name=Ggra10009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2004bp|location=Sequence derived from alignment at tig00000222_pilon:47583..49857+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAGGGCCTTTGCCAGACCGCGATATGGATGATGATGATGAATT
TGAATGGCAGCAAATCGCGGAGATGATGAATGTTATAGAACAAGAATACA
AGGATGCTCGGAATTCTTTCGGGAGTGAACCTAATGCCCCATCTCCAGCA
GACCATGGAAACCCTTTCAACTCTAACGCAACGCCCTTGGCGCCTCCTCG
AGCCCTACAGCCTGTGCCGAATCTGCAGCAGAATACGGTACCACATAACA
CGGGCGATGCCGTTCCGCAAGTACAAGAGCCCCGTTTCCAGGGGATTCCA
CAAGCTCAAAATGGTCTTCATGCCAAGGCTCCTAACATCCAATCGTCGAA
TATGGCCCCGATTTCCCTTGTCGCTCAACCAGTAGTCTCGAACGCAATGT
CTGACACACAAGCAGCACAAGGAAGACCGGTGGCAGATGTTTCTGAGCTA
CAAGGGTTAGTAGAACAACAACGTGGCTCACTTGCCAACCACCAGAATCG
AATGCAAGCCATGCAGGCCGAGTTGGACTCGCTGCGCGCTCTAGATGTTG
AGAAGATGCGCACTGAAAACACCCGTCTGACTGCGGCTCTGACAGCTGCA
ACTCAGGAGAGCGCTCGTTTGCAGGAACAATTAAGCTATGCAAAACAAGA
GCTGTCTTCCTTACGCGACCGTCGAAGAGTTGAAGCGGTTGCCATGTCAC
ATGACGCTGAGGGAACGCAACAGGCAACTTCACAAGGAACTGGAACACAG
GTACCCGGTACACAGCCACCCGCCTCACAGGCGCCTGCCCCTCAAGCCCC
TGGCACTCAGATGATAACCCGAATAAGAAGAAACGTTCCGTCATCTTCAC
AAAGACCTCCACTTGGAAAATCCCTTCGACGACCACGCGCACTCGACCTG
AGAACTTCAGCAAGAACTGAGAGCAAGGAAAATGGCACTCCTGCAAGCGA
AAAAGCGAGTGAACCCCGGAAGACGAACCAGGGTTTACAAAGAGTGGAGC
CGCGTACTGCTAGCTGGCAACTAGAGCTGCATGATTCCATGAACAATACA
ACTAAGGCGGCGCTTCGCGAGCATCTGTTCTCAGGAACAACCGGGCCATC
TCTTTGGGAGTTGGCGCGTGTTGCTGGCCAGGAGCACTTGCGAGAAGCTA
TGCTTGCGGGCATAAGTAATGACGAGGAATGGCCAAGCCTTTTGGAACCT
TTGTCTGATGTTCTAAATGCTGGCAGAGGAGCTGCCTTAATATCCTTGCA
TTGTACTTACGGATTACTCGTCTATTCCGACCAATGTCGGCGAAACATAG
AGGCATTGCTGGCCATAACTGGTAACATGACGGAAACGCTCAAAGGAGCT
GCGAAACGCGTCGATTTCGAGATAGCCGATAAATGTTTACAAGTTCTACG
AGTAATGTTTGATGCGGTGGTAATCAACGGGAGTGAGGAACAGTTAACGC
ACTTCAGAACCCAGGTTTTCGGGGACGTTGTGCTAAACTGGACGAGGCCT
CAAAGCTCGCCGTGTGACGACGAGTTGCGTGTTCTTGAGGAAACTCTCAC
TGCAGCCAGCGATGTTCTTCGGGCCGAACGATATCCTCCGCAGTCTGCTC
TGGCAATTTTGACGAGTGCAGCGTGTCACGCTCCATCGACCATAGATGAG
AATGGTGTGGCTGCTCTAGCGGATGCTTGTGTTCATGCTATTCAGACTCT
TCGCGTTTCAGATTGGTGCTCACAGGAGCAAAAAGACAAACTAGGGTGGA
AAGAAGATATCGTTTCGCATGTTAGAGAAAGAAAGAAACTAGCCGGATTT
GTTCGAGGTTGCATCGCTACTCTTGCACTGGTAGCTAGAACTAGGAACCT
TGTGCTTCGAAAATCCGAACGAAATGTTGTTCTGGGTGTGCTTTCCGACG
GTTTGGATGGCGTTTCGAAGAAAAGGGGGTATCTGAGTGAACTGGAGTGG
AGACAtcttcttcttcttcaacgccaaaaactttgccggccattcattcc
ttaa
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protein sequence of Ggra10009.t1

>Ggra10009.t1 ID=Ggra10009.t1|Name=Ggra10009.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=668bp
MASGPLPDRDMDDDDEFEWQQIAEMMNVIEQEYKDARNSFGSEPNAPSPA
DHGNPFNSNATPLAPPRALQPVPNLQQNTVPHNTGDAVPQVQEPRFQGIP
QAQNGLHAKAPNIQSSNMAPISLVAQPVVSNAMSDTQAAQGRPVADVSEL
QGLVEQQRGSLANHQNRMQAMQAELDSLRALDVEKMRTENTRLTAALTAA
TQESARLQEQLSYAKQELSSLRDRRRVEAVAMSHDAEGTQQATSQGTGTQ
VPGTQPPASQAPAPQAPGTQMITRIRRNVPSSSQRPPLGKSLRRPRALDL
RTSARTESKENGTPASEKASEPRKTNQGLQRVEPRTASWQLELHDSMNNT
TKAALREHLFSGTTGPSLWELARVAGQEHLREAMLAGISNDEEWPSLLEP
LSDVLNAGRGAALISLHCTYGLLVYSDQCRRNIEALLAITGNMTETLKGA
AKRVDFEIADKCLQVLRVMFDAVVINGSEEQLTHFRTQVFGDVVLNWTRP
QSSPCDDELRVLEETLTAASDVLRAERYPPQSALAILTSAACHAPSTIDE
NGVAALADACVHAIQTLRVSDWCSQEQKDKLGWKEDIVSHVRERKKLAGF
VRGCIATLALVARTRNLVLRKSERNVVLGVLSDGLDGVSKKRGYLSELEW
RHLLLLQRQKLCRPFIP*
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mRNA from alignment at tig00000222_pilon:47583..49857+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10009.t1 ID=Ggra10009.t1|Name=Ggra10009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2275bp|location=Sequence derived from alignment at tig00000222_pilon:47583..49857+ (Gracilaria gracilis GNS1m male)
ATGGCTTCAGGGCCTTTGCCAGACCGCGATATGGATGATGATGATGAATT
TGAATGGCAGCAAATCGCGGAGATGATGAATGTTATAGAACAAGAATACA
AGGATGCTCGGAATTCTTTCGGGAGTGAACCTAATGCCCCATCTCCAGCA
GACCATGGAAACCCTTTCAACTCTAACGCAACGCCCTTGGCGCCTCCTCG
AGCCCTACAGCCTGTGCCGAATCTGCAGCAGAATACGGTACCACATAACA
CGGGCGATGCCGTTCCGCAAGTACAAGAGCCCCGTTTCCAGGGGATTCCA
CAAGCTCAAAATGGTCTTCATGCCAAGGCTCCTAACATCCAATCGTCGAA
TATGGCCCCGATTTCCCTTGTCGCTCAACCAGTAGTCTCGAACGCAATGT
CTGACACACAAGCAGCACAAGGAAGACCGGTGGCAGATGTTTCTGAGCTA
CAAGGGTTAGTAGAACAACAACGTGGCTCACTTGCCAACCACCAGAATCG
AATGCAAGCCATGCAGGCCGAGTTGGACTCGCTGCGCGCTCTAGATGTTG
AGAAGATGCGCACTGAAAACACCCGTCTGACTGCGGCTCTGACAGCTGCA
ACTCAGGAGAGCGCTCGTTTGCAGGAACAATTAAGCTATGCAAAACAAGA
GCTGTCTTCCTTACGCGACCGTCGAAGAGTTGAAGCGGTTGCCATGTCAC
ATGACGCTGAGGGAACGCAACAGGCAACTTCACAAGGAACTGGAACACAG
GTACCCGGTACACAGCCACCCGCCTCACAGGCGCCTGCCCCTCAAGCCCC
TGGCACTCAGATGATAACCCGAATAAGAAGAAACGTTCCGTCATCTTCAC
AAAGACCTCCACTTGGAAAATCCCTTCGACGACCACGCGCACTCGACCTG
AGAACTTCAGCAAGAACTGAGAGCAAGGAAAATGGCACTCCTGCAAGCGA
AAAAGCGAGTGAACCCCGGAAGACGAACCAGGGTTTACAAAGAGTGGAGC
CGCGTACTGCTAGCTGGCAACTAGAGCTGCATGATTCCATGAACAATACA
ACTAAGGCGGCGCTTCGCGAGCATCTGTTCTCAGGAACAACCGGGCCATC
TCTTTGGGAGTTGGCGCGTGTTGCTGGCCAGGAGCACTTGCGAGAAGCTA
TGCTTGCGGGCATAAGTAATGACGAGGAATGGCCAAGCCTTTTGGAACCT
TTGTCTGATGTTCTAAATGCTGGCAGAGGAGCTGCCTTAATATCCTTGCA
TTGTACTTACGGATTACTCGTCTATTCCGACCAATGTCGGCGAAACATAG
AGGCATTGCTGGCCATAACTGGTAACATGACGGAAACGCTCAAAGGAGCT
GCGAAACGCGTCGATTTCGAGATAGCCGATAAATGTTTACAAGTTCTACG
AGTAATGTTTGATGCGGTGGTAATCAACGGGAGTGAGGAACAGTTAACGC
ACTTCAGAACCCAGGTTTTCGGGGACGTTGTGCTAAACTGGACGAGGCGT
ATGCGAGTCTTACCAACTTCTATTCCTCGAAGTCAACGAAAACTAAGCTC
AAAGGTACGACATTCAGCACTTTCTGTTCTGGAAGTAGGCGTTAGTGAGT
GTCTGACGTCGTTAAGCTCGCCGTGTGACGACGAGTTGCGTGTTCTTGAG
GAAACTCTCACTGCAGCCAGCGATGTTCTTCGGGCCGAACGATATCCTCC
GCAGTCTGCTCTGGCAATTTTGACGAGTGCAGCGTGTCACGCTCCATCGA
CCATAGATGAGAATGGTGTGGCTGCTCTAGCGGATGCTTGTGTTCATGCT
ATTCAGACTCTTCGCGTTTCAGATTGGTGCTCACAGGAGCAAAAAGACAA
ACTAGGGTGGAAAGAAGATATCGTTTCGCATGTTAGAGAAAGAAAGAAAC
TAGCCGGATTTGTTCGAGGTTGCATCGCTACTCTTGCACTGGTAGCTAGA
ACTAGGAACCTTGTGCTTCGAAAATCCGAACGAAATGTTGTTCTGGGTGT
GCTTTCCGTACTTGCTTGGCCTGCTCAGCGGAAAGATTCTTTCCATCCAC
CGAAAGAGCTGCGTGGAGAAACATTTGCAGCAGAGTGCAGGACGGTTTGG
ATGGCGTTTCGAAGAAAAGGGGGTATCTGAGTGAACTGGAGTGGAGACAt
cttcttcttcttcgtaagtgtggttcattacttctaattgcgaagtgatg
agagtgctaaagtacttacatgtagccttctctcctaaagaacgccaaaa
actttgccggccattcattccttaa
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Coding sequence (CDS) from alignment at tig00000222_pilon:47583..49857+

>Ggra10009.t1 ID=Ggra10009.t1|Name=Ggra10009.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2004bp|location=Sequence derived from alignment at tig00000222_pilon:47583..49857+ (Gracilaria gracilis GNS1m male)
ATGGCTTCAGGGCCTTTGCCAGACCGCGATATGGATGATGATGATGAATT
TGAATGGCAGCAAATCGCGGAGATGATGAATGTTATAGAACAAGAATACA
AGGATGCTCGGAATTCTTTCGGGAGTGAACCTAATGCCCCATCTCCAGCA
GACCATGGAAACCCTTTCAACTCTAACGCAACGCCCTTGGCGCCTCCTCG
AGCCCTACAGCCTGTGCCGAATCTGCAGCAGAATACGGTACCACATAACA
CGGGCGATGCCGTTCCGCAAGTACAAGAGCCCCGTTTCCAGGGGATTCCA
CAAGCTCAAAATGGTCTTCATGCCAAGGCTCCTAACATCCAATCGTCGAA
TATGGCCCCGATTTCCCTTGTCGCTCAACCAGTAGTCTCGAACGCAATGT
CTGACACACAAGCAGCACAAGGAAGACCGGTGGCAGATGTTTCTGAGCTA
CAAGGGTTAGTAGAACAACAACGTGGCTCACTTGCCAACCACCAGAATCG
AATGCAAGCCATGCAGGCCGAGTTGGACTCGCTGCGCGCTCTAGATGTTG
AGAAGATGCGCACTGAAAACACCCGTCTGACTGCGGCTCTGACAGCTGCA
ACTCAGGAGAGCGCTCGTTTGCAGGAACAATTAAGCTATGCAAAACAAGA
GCTGTCTTCCTTACGCGACCGTCGAAGAGTTGAAGCGGTTGCCATGTCAC
ATGACGCTGAGGGAACGCAACAGGCAACTTCACAAGGAACTGGAACACAG
GTACCCGGTACACAGCCACCCGCCTCACAGGCGCCTGCCCCTCAAGCCCC
TGGCACTCAGATGATAACCCGAATAAGAAGAAACGTTCCGTCATCTTCAC
AAAGACCTCCACTTGGAAAATCCCTTCGACGACCACGCGCACTCGACCTG
AGAACTTCAGCAAGAACTGAGAGCAAGGAAAATGGCACTCCTGCAAGCGA
AAAAGCGAGTGAACCCCGGAAGACGAACCAGGGTTTACAAAGAGTGGAGC
CGCGTACTGCTAGCTGGCAACTAGAGCTGCATGATTCCATGAACAATACA
ACTAAGGCGGCGCTTCGCGAGCATCTGTTCTCAGGAACAACCGGGCCATC
TCTTTGGGAGTTGGCGCGTGTTGCTGGCCAGGAGCACTTGCGAGAAGCTA
TGCTTGCGGGCATAAGTAATGACGAGGAATGGCCAAGCCTTTTGGAACCT
TTGTCTGATGTTCTAAATGCTGGCAGAGGAGCTGCCTTAATATCCTTGCA
TTGTACTTACGGATTACTCGTCTATTCCGACCAATGTCGGCGAAACATAG
AGGCATTGCTGGCCATAACTGGTAACATGACGGAAACGCTCAAAGGAGCT
GCGAAACGCGTCGATTTCGAGATAGCCGATAAATGTTTACAAGTTCTACG
AGTAATGTTTGATGCGGTGGTAATCAACGGGAGTGAGGAACAGTTAACGC
ACTTCAGAACCCAGGTTTTCGGGGACGTTGTGCTAAACTGGACGAGGCCT
CAAAGCTCGCCGTGTGACGACGAGTTGCGTGTTCTTGAGGAAACTCTCAC
TGCAGCCAGCGATGTTCTTCGGGCCGAACGATATCCTCCGCAGTCTGCTC
TGGCAATTTTGACGAGTGCAGCGTGTCACGCTCCATCGACCATAGATGAG
AATGGTGTGGCTGCTCTAGCGGATGCTTGTGTTCATGCTATTCAGACTCT
TCGCGTTTCAGATTGGTGCTCACAGGAGCAAAAAGACAAACTAGGGTGGA
AAGAAGATATCGTTTCGCATGTTAGAGAAAGAAAGAAACTAGCCGGATTT
GTTCGAGGTTGCATCGCTACTCTTGCACTGGTAGCTAGAACTAGGAACCT
TGTGCTTCGAAAATCCGAACGAAATGTTGTTCTGGGTGTGCTTTCCGACG
GTTTGGATGGCGTTTCGAAGAAAAGGGGGTATCTGAGTGAACTGGAGTGG
AGACAtcttcttcttcttcaacgccaaaaactttgccggccattcattcc
ttaa
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