Ggra10003.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10003.t1
Unique NameGgra10003.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:154902..156578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10003Ggra10003Gracilaria gracilis GNS1m malegenetig00000213_pilon 154902..156578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10003.t1Ggra10003.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 154902..156578 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10003.t1.start1Ggra10003.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 154902..154904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10003.t1.CDS1Ggra10003.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 154902..155988 +
Ggra10003.t1.CDS2Ggra10003.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 156325..156578 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10003.t1.exon1Ggra10003.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 154902..155988 +
Ggra10003.t1.exon2Ggra10003.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 156325..156578 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10003.t1.intron1Ggra10003.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 155989..156324 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10003.t1.stop1Ggra10003.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 156576..156578 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10003.t1 ID=Ggra10003.t1|Name=Ggra10003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp
MQQPPSVSAVTAAAAAAAAAAAVSQPDLRGVRPSRAVLPSTRPAVNRFVR
PSATVPRPTAHVNASSLNASSLNASSLNASSLNASSLNASPAQPQPAVNR
VLPSTRPSANRYATAPTVPPLANAQLKASSLNTSSAQPQPPLKRVVPSTH
PSANRFARPLTTAARATAHVNASSLNAPSLSASSAQPQPATNRVLPSTRP
AVNRYATAPTAAVRANVQLKASSLNVSFAPPQPAQPQPAVKRVLPSTRPA
VNRYITAPTAAVRANAKLKASSLNVSSAQPQPAQPQPAVKRVLPSTRPSV
NRYAMAPTAAVNAHLQASSLNASSAQPQPATNRVVPSTRPSVNRYATAPT
AAVHANAQLKASSAVAVADTRAVKRKAVPRAAPAVNTNGNAAAAMSGADS
RAQAADHVVFDLEKFISLKSDDELWKCHEFYDGTLPPLMGSLEIPN*
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spliced messenger RNA

>Ggra10003.t1 ID=Ggra10003.t1|Name=Ggra10003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000213_pilon:154902..156578+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAACCTCCGTCCGTATCCGCCGTCAccgccgccgccgccgccgc
cgccgccgctgccgccgTCTCGCAGCCCGACCTGCGTGGCGTGCGCCCGT
CGCGCGCCGTGCTACCCTCGACTCGTCCAGCTGTCAACCGCTTTGTGAGG
CCGTCCGCAACCGTGCCACGCCCCACCGCGCACGTCAATGCGTCGTCGCT
CAATGCATCGTCGCTCAATGCATCGTCGCTCAATGCATCGTCGCTCAACG
CATCGTCGCTCAATGCATCGCCTGCTCAACCACAGCCGGCCGTCAACCGC
GTGCTGCCCTCTACTCGCCCATCTGCCAATCGCTACGCAACAGCGCCCAC
CGTGCCGCCGCTCGCCAACGCACAGCTAAAGGCGTCGTCGCTGAACACAT
CGTCTGCTCAACCACAGCCGCCGCTCAAGCGCGTGGTGCCGTCTACGCAC
CCATCTGCGAACCGCTTTGCGAGGCCGCTCACAACCGCCGCACGTGCCAC
CGCGCACGTCAATGCATCATCGCTCAATGCGCCGTCGCTCAGTGCATCGT
CTGCTCAACCACAGCCGGCCACCAACCGCGTGCTGCCCTCTACTCGCCCA
GCTGTCAACCGCTACGCAACAGCGCCCACCGCGGCGGTGCGCGCCAACGT
ACAGCTAAAGGCTTCGTCGCTGAATGTATCGTTTGCTCCACCACAGCCCG
CTCAACCACAGCCGGCGGTCAAGCGCGTGCTGCCCTCTACTCGCCCAGCT
GTCAATCGCTATATAACGGCGCCCACTGCGGCAGTGCGCGCCAACGCAAA
GTTAAAGGCATCGTCGCTGAATGTATCGTCTGCTCAACCACAGCCCGCTC
AACCACAGCCGGCGGTCAAGCGCGTGCTGCCCTCTACTCGCCCATCTGTC
AACCGCTATGCAATGGCGCCCACCGCGGCAGTGAACGCACATCTACAGGC
ATCGTCGCTCAATGCATCGTCTGCTCAACCACAGCCGGCTACCAACCGCG
TGGTGCCCTCTACTCGCCCATCTGTCAATCGCTATGCAACGGCGCCCACC
GCGGCGGTGCACGCCAACGCACAGCTAAAGGCATCGTCGGCGGTGGCGGT
TGCAGATACGCGCGCGGTGAAGAGGAAGGCTGTGCCACGCGCTGCGCCGG
CTGTGAACACTAATGGAAACGCTGCGGCGGCCATGAGTGGCGCCGATTCG
CGGGCGCAGGCGGCGGACCATGTGGTTTTTGATCTGGAAAAGTTCATCTC
GCTCAAGAGTGATGATGAGCTGTGGAAGTGTCACGAGTTTTATGACGGCA
CTCTGCCGCCGTTGATGGGCAGTCTGGAGATTCCCAACTGA
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protein sequence of Ggra10003.t1

>Ggra10003.t1 ID=Ggra10003.t1|Name=Ggra10003.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=447bp
MQQPPSVSAVTAAAAAAAAAAAVSQPDLRGVRPSRAVLPSTRPAVNRFVR
PSATVPRPTAHVNASSLNASSLNASSLNASSLNASSLNASPAQPQPAVNR
VLPSTRPSANRYATAPTVPPLANAQLKASSLNTSSAQPQPPLKRVVPSTH
PSANRFARPLTTAARATAHVNASSLNAPSLSASSAQPQPATNRVLPSTRP
AVNRYATAPTAAVRANVQLKASSLNVSFAPPQPAQPQPAVKRVLPSTRPA
VNRYITAPTAAVRANAKLKASSLNVSSAQPQPAQPQPAVKRVLPSTRPSV
NRYAMAPTAAVNAHLQASSLNASSAQPQPATNRVVPSTRPSVNRYATAPT
AAVHANAQLKASSAVAVADTRAVKRKAVPRAAPAVNTNGNAAAAMSGADS
RAQAADHVVFDLEKFISLKSDDELWKCHEFYDGTLPPLMGSLEIPN*
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mRNA from alignment at tig00000213_pilon:154902..156578+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10003.t1 ID=Ggra10003.t1|Name=Ggra10003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000213_pilon:154902..156578+ (Gracilaria gracilis GNS1m male)
ATGCAGCAACCTCCGTCCGTATCCGCCGTCAccgccgccgccgccgccgc
cgccgccgctgccgccgTCTCGCAGCCCGACCTGCGTGGCGTGCGCCCGT
CGCGCGCCGTGCTACCCTCGACTCGTCCAGCTGTCAACCGCTTTGTGAGG
CCGTCCGCAACCGTGCCACGCCCCACCGCGCACGTCAATGCGTCGTCGCT
CAATGCATCGTCGCTCAATGCATCGTCGCTCAATGCATCGTCGCTCAACG
CATCGTCGCTCAATGCATCGCCTGCTCAACCACAGCCGGCCGTCAACCGC
GTGCTGCCCTCTACTCGCCCATCTGCCAATCGCTACGCAACAGCGCCCAC
CGTGCCGCCGCTCGCCAACGCACAGCTAAAGGCGTCGTCGCTGAACACAT
CGTCTGCTCAACCACAGCCGCCGCTCAAGCGCGTGGTGCCGTCTACGCAC
CCATCTGCGAACCGCTTTGCGAGGCCGCTCACAACCGCCGCACGTGCCAC
CGCGCACGTCAATGCATCATCGCTCAATGCGCCGTCGCTCAGTGCATCGT
CTGCTCAACCACAGCCGGCCACCAACCGCGTGCTGCCCTCTACTCGCCCA
GCTGTCAACCGCTACGCAACAGCGCCCACCGCGGCGGTGCGCGCCAACGT
ACAGCTAAAGGCTTCGTCGCTGAATGTATCGTTTGCTCCACCACAGCCCG
CTCAACCACAGCCGGCGGTCAAGCGCGTGCTGCCCTCTACTCGCCCAGCT
GTCAATCGCTATATAACGGCGCCCACTGCGGCAGTGCGCGCCAACGCAAA
GTTAAAGGCATCGTCGCTGAATGTATCGTCTGCTCAACCACAGCCCGCTC
AACCACAGCCGGCGGTCAAGCGCGTGCTGCCCTCTACTCGCCCATCTGTC
AACCGCTATGCAATGGCGCCCACCGCGGCAGTGAACGCACATCTACAGGC
ATCGTCGCTCAATGCATCGTCTGCTCAACCACAGCCGGCTACCAACCGCG
TGGTGCCCTCTACTCGCCCATCTGTCAATCGCTATGCAACGGCGCCCACC
GCGGCGGTGCACGCCAACGCACAGCTAAAGGCATCGTGTGTGCAACCACA
CACGGCAATCAAGCGcgcacccgcgctgtcgcctgccagcatcgcgcatg
cgcatctgtccgccgcttatgcgcgcgtttcgtcgtcgcttgctgcaaca
gcggcggcggcggcggcagcgacggccacgccacgtgcgctcccgccaca
tgatgatgacaaactgcatgtgaccatctggaacagagtgcagcgccgca
agattgcgggaaatgcggcgccgttgcgcaagaatttggcgcgctatctg
cgcgaacacaccgactgcgagatgtacgtgcagcaggatcgcGCCTCCAA
CACGCTGCGGAAACGAGCGGCAGCGGCGGTGGCGGTTGCAGATACGCGCG
CGGTGAAGAGGAAGGCTGTGCCACGCGCTGCGCCGGCTGTGAACACTAAT
GGAAACGCTGCGGCGGCCATGAGTGGCGCCGATTCGCGGGCGCAGGCGGC
GGACCATGTGGTTTTTGATCTGGAAAAGTTCATCTCGCTCAAGAGTGATG
ATGAGCTGTGGAAGTGTCACGAGTTTTATGACGGCACTCTGCCGCCGTTG
ATGGGCAGTCTGGAGATTCCCAACTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:154902..156578+

>Ggra10003.t1 ID=Ggra10003.t1|Name=Ggra10003.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000213_pilon:154902..156578+ (Gracilaria gracilis GNS1m male)
ATGCAGCAACCTCCGTCCGTATCCGCCGTCAccgccgccgccgccgccgc
cgccgccgctgccgccgTCTCGCAGCCCGACCTGCGTGGCGTGCGCCCGT
CGCGCGCCGTGCTACCCTCGACTCGTCCAGCTGTCAACCGCTTTGTGAGG
CCGTCCGCAACCGTGCCACGCCCCACCGCGCACGTCAATGCGTCGTCGCT
CAATGCATCGTCGCTCAATGCATCGTCGCTCAATGCATCGTCGCTCAACG
CATCGTCGCTCAATGCATCGCCTGCTCAACCACAGCCGGCCGTCAACCGC
GTGCTGCCCTCTACTCGCCCATCTGCCAATCGCTACGCAACAGCGCCCAC
CGTGCCGCCGCTCGCCAACGCACAGCTAAAGGCGTCGTCGCTGAACACAT
CGTCTGCTCAACCACAGCCGCCGCTCAAGCGCGTGGTGCCGTCTACGCAC
CCATCTGCGAACCGCTTTGCGAGGCCGCTCACAACCGCCGCACGTGCCAC
CGCGCACGTCAATGCATCATCGCTCAATGCGCCGTCGCTCAGTGCATCGT
CTGCTCAACCACAGCCGGCCACCAACCGCGTGCTGCCCTCTACTCGCCCA
GCTGTCAACCGCTACGCAACAGCGCCCACCGCGGCGGTGCGCGCCAACGT
ACAGCTAAAGGCTTCGTCGCTGAATGTATCGTTTGCTCCACCACAGCCCG
CTCAACCACAGCCGGCGGTCAAGCGCGTGCTGCCCTCTACTCGCCCAGCT
GTCAATCGCTATATAACGGCGCCCACTGCGGCAGTGCGCGCCAACGCAAA
GTTAAAGGCATCGTCGCTGAATGTATCGTCTGCTCAACCACAGCCCGCTC
AACCACAGCCGGCGGTCAAGCGCGTGCTGCCCTCTACTCGCCCATCTGTC
AACCGCTATGCAATGGCGCCCACCGCGGCAGTGAACGCACATCTACAGGC
ATCGTCGCTCAATGCATCGTCTGCTCAACCACAGCCGGCTACCAACCGCG
TGGTGCCCTCTACTCGCCCATCTGTCAATCGCTATGCAACGGCGCCCACC
GCGGCGGTGCACGCCAACGCACAGCTAAAGGCATCGTCGGCGGTGGCGGT
TGCAGATACGCGCGCGGTGAAGAGGAAGGCTGTGCCACGCGCTGCGCCGG
CTGTGAACACTAATGGAAACGCTGCGGCGGCCATGAGTGGCGCCGATTCG
CGGGCGCAGGCGGCGGACCATGTGGTTTTTGATCTGGAAAAGTTCATCTC
GCTCAAGAGTGATGATGAGCTGTGGAAGTGTCACGAGTTTTATGACGGCA
CTCTGCCGCCGTTGATGGGCAGTCTGGAGATTCCCAACTGA
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