Gchil6533.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6533.t1
Unique Name	Gchil6533.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:408487..410253 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6533	Gchil6533	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 408487..410253 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6533.t1.start1	Gchil6533.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 408487..408489 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6533.t1.CDS1	Gchil6533.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 408487..410253 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6533.t1.exon1	Gchil6533.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 408487..410253 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6533.t1.stop1	Gchil6533.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 410251..410253 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6533.t1	Gchil6533.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 408487..410253 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:408487..410253+
coding sequence from alignment at tig00004390_pilon:408487..410253+

mRNA sequence

>Gchil6533.t1 ID=Gchil6533.t1|Name=Gchil6533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=589bp
MLTLHVGFVPLVPVFRKRVSRKRPRSTCCTASNASQPDELPDFAAKLGPP
AVPDFIKRLDMLEFQRRQGATPMPSLPPEVLQFLRDEYPRIKKLDEIMEV
EMKRDDYDPNDHRVYSWAYNYLRPHAMGRSLQALIACLVTYSTVKLVQYV
RSRISQTVLMSALVSADTVFTATLAGAFPAFLLSWALHRARFNDVRTDGV
RRSVVMFCLTAVALLGVWAMAATANIKLALMSSIFVRYMLFIPVWGWMDI
RREATLGQTPLAKLYKAWRLAATVAVLFYGSMLRLLALCVPQEFPSQVFG
HRAELFRLALWKRFPVSCSLCNDPRGLFFMGGLVVAGLLVYTLYLIIFVT
DCCRINFHRECESVLTSFCLKKGAYQPNRHPDDITCSLSARNPDESFLPS
RPIMLRPDEDQLATSSAVMVDDTIPVFAYLDREKEIMKQTGVTEWLKYRS
EQVPADTEEEKEERDAKALLSWARALKPEEEKLSIEDYFQTVEDDEYFYD
PTTGNWLFVEGSDGRKADAEDPNVDGGSNGSGNAQNWINLSTEEEVEIPP
EWEPIVQRMLEQNNKFDDKTPQTDDEEDSGSSSLSVYV*

spliced messenger RNA

>Gchil6533.t1 ID=Gchil6533.t1|Name=Gchil6533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00004390_pilon:408487..410253+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACACTGCACGTTGGGTTTGTACCCTTAGTCCCAGTTTTTAGGAA
GCGCGTTTCGCGAAAACGTCCTCGCTCAACATGCTGCACTGCTTCAAATG
CGTCCCAACCAGATGAACTCCCTGACTTCGCCGCGAAGCTCGGCCCACCC
GCCGTTCCGGATTTCATCAAACGTTTGGATATGCTCGAGTTTCAACGAAG
ACAAGGAGCTACGCCAATGCCTTCTTTGCCACCCGAAGTTTTACAATTTT
TAAGAGACGAATATCCACGGATAAAGAAGTTAGATGAAATCATGGAGGTC
GAAATGAAACGAGACGATTATGACCCCAATGATCACCGTGTGTATTCTTG
GGCTTATAACTATTTAAGGCCTCACGCCATGGGACGTTCTTTGCAAGCTC
TCATTGCGTGTCTAGTTACTTATTCTACTGTGAAACTGGTTCAATATGTG
AGAAGTCGCATATCACAGACTGTATTGATGAGCGCCCTTGTTTCCGCGGA
CACTGTCTTCACAGCTACCTTAGCTGGAGCTTTTCCAGCATTTCTCTTGT
CATGGGCATTGCATCGAGCGCGTTTCAACGATGTGCGGACCGATGGTGTC
CGTCGTTCGGTGGTAATGTTTTGTCTGACTGCTGTGGCACTTTTGGGTGT
TTGGGCCATGGCAGCAACTGCAAATATTAAACTGGCACTTATGTCCTCGA
TATTTGTGCGATATATGCTCTTCATACCGGTCTGGGGGTGGATGGACATA
AGACGAGAAGCCACCCTAGGACAAACTCCTTTGGCAAAGCTGTATAAGGC
ATGGAGATTGGCCGCAACTGTGGCTGTTCTTTTTTACGGCAGTATGTTGC
GATTATTGGCATTGTGCGTACCGCAAGAATTCCCATCTCAAGTATTTGGG
CACCGAGCGGAATTGTTCAGACTCGCACTTTGGAAACGATTTCCCGTTTC
ATGCTCGCTTTGCAATGATCCGCGGGGGTTATTTTTCATGGGAGGGTTAG
TTGTCGCCGGATTGCTGGTATATACGCTTTATCTAATCATTTTTGTCACG
GACTGTTGCCGAATTAATTTTCACCGTGAATGCGAATCCGTCTTAACCTC
CTTCTGCTTGAAAAAGGGAGCATATCAACCAAACCGCCATCCGGATGACA
TCACATGTTCTCTCTCTGCGCGGAACCCGGACGAGTCATTTCTTCCTTCT
CGCCCTATAATGTTGCGCCCAGACGAAGATCAGCTAGCAACAAGCTCAGC
AGTGATGGTCGACGACACAATCCCCGTTTTTGCGTACTTGGACAGAGAAA
AAGAAATAATGAAGCAAACAGGAGTCACGGAGTGGCTCAAATATCGCTCC
GAGCAAGTTCCGGCAGATACGGAAGAAGAAAAGGAAGAGCGCGACGCCAA
AGCTCTTCTTTCCTGGGCTAGGGCACTGAAGCCTGAAGAGGAGAAGCTAT
CGATAGAAGACTACTTCCAGACTGTAGAGGACGACGAGTACTTTTACGAC
CCAACAACAGGTAATTGGTTGTTTGTGGAAGGCTCGGACGGACGGAAAGC
TGACGCGGAGGACCCCAATGTTGATGGTGGCAGCAACGGTAGCGGCAACG
CTCAGAATTGGATAAATCTGAGTACTGAAGAGGAGGTGGAGATTCCGCCC
GAGTGGGAGCCTATTGTACAACGAATGCTCGAACAGAACAACAAATTTGA
TGACAAAACTCCGCAAACGGATGATGAAGAGGATTCCGGGTCTTCGTCGC
TTTCCGTGTACGTTTAG

protein sequence of Gchil6533.t1

>Gchil6533.t1 ID=Gchil6533.t1|Name=Gchil6533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=589bp
MLTLHVGFVPLVPVFRKRVSRKRPRSTCCTASNASQPDELPDFAAKLGPP
AVPDFIKRLDMLEFQRRQGATPMPSLPPEVLQFLRDEYPRIKKLDEIMEV
EMKRDDYDPNDHRVYSWAYNYLRPHAMGRSLQALIACLVTYSTVKLVQYV
RSRISQTVLMSALVSADTVFTATLAGAFPAFLLSWALHRARFNDVRTDGV
RRSVVMFCLTAVALLGVWAMAATANIKLALMSSIFVRYMLFIPVWGWMDI
RREATLGQTPLAKLYKAWRLAATVAVLFYGSMLRLLALCVPQEFPSQVFG
HRAELFRLALWKRFPVSCSLCNDPRGLFFMGGLVVAGLLVYTLYLIIFVT
DCCRINFHRECESVLTSFCLKKGAYQPNRHPDDITCSLSARNPDESFLPS
RPIMLRPDEDQLATSSAVMVDDTIPVFAYLDREKEIMKQTGVTEWLKYRS
EQVPADTEEEKEERDAKALLSWARALKPEEEKLSIEDYFQTVEDDEYFYD
PTTGNWLFVEGSDGRKADAEDPNVDGGSNGSGNAQNWINLSTEEEVEIPP
EWEPIVQRMLEQNNKFDDKTPQTDDEEDSGSSSLSVYV*

mRNA from alignment at tig00004390_pilon:408487..410253+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6533.t1 ID=Gchil6533.t1|Name=Gchil6533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00004390_pilon:408487..410253+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACACTGCACGTTGGGTTTGTACCCTTAGTCCCAGTTTTTAGGAA
GCGCGTTTCGCGAAAACGTCCTCGCTCAACATGCTGCACTGCTTCAAATG
CGTCCCAACCAGATGAACTCCCTGACTTCGCCGCGAAGCTCGGCCCACCC
GCCGTTCCGGATTTCATCAAACGTTTGGATATGCTCGAGTTTCAACGAAG
ACAAGGAGCTACGCCAATGCCTTCTTTGCCACCCGAAGTTTTACAATTTT
TAAGAGACGAATATCCACGGATAAAGAAGTTAGATGAAATCATGGAGGTC
GAAATGAAACGAGACGATTATGACCCCAATGATCACCGTGTGTATTCTTG
GGCTTATAACTATTTAAGGCCTCACGCCATGGGACGTTCTTTGCAAGCTC
TCATTGCGTGTCTAGTTACTTATTCTACTGTGAAACTGGTTCAATATGTG
AGAAGTCGCATATCACAGACTGTATTGATGAGCGCCCTTGTTTCCGCGGA
CACTGTCTTCACAGCTACCTTAGCTGGAGCTTTTCCAGCATTTCTCTTGT
CATGGGCATTGCATCGAGCGCGTTTCAACGATGTGCGGACCGATGGTGTC
CGTCGTTCGGTGGTAATGTTTTGTCTGACTGCTGTGGCACTTTTGGGTGT
TTGGGCCATGGCAGCAACTGCAAATATTAAACTGGCACTTATGTCCTCGA
TATTTGTGCGATATATGCTCTTCATACCGGTCTGGGGGTGGATGGACATA
AGACGAGAAGCCACCCTAGGACAAACTCCTTTGGCAAAGCTGTATAAGGC
ATGGAGATTGGCCGCAACTGTGGCTGTTCTTTTTTACGGCAGTATGTTGC
GATTATTGGCATTGTGCGTACCGCAAGAATTCCCATCTCAAGTATTTGGG
CACCGAGCGGAATTGTTCAGACTCGCACTTTGGAAACGATTTCCCGTTTC
ATGCTCGCTTTGCAATGATCCGCGGGGGTTATTTTTCATGGGAGGGTTAG
TTGTCGCCGGATTGCTGGTATATACGCTTTATCTAATCATTTTTGTCACG
GACTGTTGCCGAATTAATTTTCACCGTGAATGCGAATCCGTCTTAACCTC
CTTCTGCTTGAAAAAGGGAGCATATCAACCAAACCGCCATCCGGATGACA
TCACATGTTCTCTCTCTGCGCGGAACCCGGACGAGTCATTTCTTCCTTCT
CGCCCTATAATGTTGCGCCCAGACGAAGATCAGCTAGCAACAAGCTCAGC
AGTGATGGTCGACGACACAATCCCCGTTTTTGCGTACTTGGACAGAGAAA
AAGAAATAATGAAGCAAACAGGAGTCACGGAGTGGCTCAAATATCGCTCC
GAGCAAGTTCCGGCAGATACGGAAGAAGAAAAGGAAGAGCGCGACGCCAA
AGCTCTTCTTTCCTGGGCTAGGGCACTGAAGCCTGAAGAGGAGAAGCTAT
CGATAGAAGACTACTTCCAGACTGTAGAGGACGACGAGTACTTTTACGAC
CCAACAACAGGTAATTGGTTGTTTGTGGAAGGCTCGGACGGACGGAAAGC
TGACGCGGAGGACCCCAATGTTGATGGTGGCAGCAACGGTAGCGGCAACG
CTCAGAATTGGATAAATCTGAGTACTGAAGAGGAGGTGGAGATTCCGCCC
GAGTGGGAGCCTATTGTACAACGAATGCTCGAACAGAACAACAAATTTGA
TGACAAAACTCCGCAAACGGATGATGAAGAGGATTCCGGGTCTTCGTCGC
TTTCCGTGTACGTTTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:408487..410253+

>Gchil6533.t1 ID=Gchil6533.t1|Name=Gchil6533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1767bp|location=Sequence derived from alignment at tig00004390_pilon:408487..410253+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACACTGCACGTTGGGTTTGTACCCTTAGTCCCAGTTTTTAGGAA
GCGCGTTTCGCGAAAACGTCCTCGCTCAACATGCTGCACTGCTTCAAATG
CGTCCCAACCAGATGAACTCCCTGACTTCGCCGCGAAGCTCGGCCCACCC
GCCGTTCCGGATTTCATCAAACGTTTGGATATGCTCGAGTTTCAACGAAG
ACAAGGAGCTACGCCAATGCCTTCTTTGCCACCCGAAGTTTTACAATTTT
TAAGAGACGAATATCCACGGATAAAGAAGTTAGATGAAATCATGGAGGTC
GAAATGAAACGAGACGATTATGACCCCAATGATCACCGTGTGTATTCTTG
GGCTTATAACTATTTAAGGCCTCACGCCATGGGACGTTCTTTGCAAGCTC
TCATTGCGTGTCTAGTTACTTATTCTACTGTGAAACTGGTTCAATATGTG
AGAAGTCGCATATCACAGACTGTATTGATGAGCGCCCTTGTTTCCGCGGA
CACTGTCTTCACAGCTACCTTAGCTGGAGCTTTTCCAGCATTTCTCTTGT
CATGGGCATTGCATCGAGCGCGTTTCAACGATGTGCGGACCGATGGTGTC
CGTCGTTCGGTGGTAATGTTTTGTCTGACTGCTGTGGCACTTTTGGGTGT
TTGGGCCATGGCAGCAACTGCAAATATTAAACTGGCACTTATGTCCTCGA
TATTTGTGCGATATATGCTCTTCATACCGGTCTGGGGGTGGATGGACATA
AGACGAGAAGCCACCCTAGGACAAACTCCTTTGGCAAAGCTGTATAAGGC
ATGGAGATTGGCCGCAACTGTGGCTGTTCTTTTTTACGGCAGTATGTTGC
GATTATTGGCATTGTGCGTACCGCAAGAATTCCCATCTCAAGTATTTGGG
CACCGAGCGGAATTGTTCAGACTCGCACTTTGGAAACGATTTCCCGTTTC
ATGCTCGCTTTGCAATGATCCGCGGGGGTTATTTTTCATGGGAGGGTTAG
TTGTCGCCGGATTGCTGGTATATACGCTTTATCTAATCATTTTTGTCACG
GACTGTTGCCGAATTAATTTTCACCGTGAATGCGAATCCGTCTTAACCTC
CTTCTGCTTGAAAAAGGGAGCATATCAACCAAACCGCCATCCGGATGACA
TCACATGTTCTCTCTCTGCGCGGAACCCGGACGAGTCATTTCTTCCTTCT
CGCCCTATAATGTTGCGCCCAGACGAAGATCAGCTAGCAACAAGCTCAGC
AGTGATGGTCGACGACACAATCCCCGTTTTTGCGTACTTGGACAGAGAAA
AAGAAATAATGAAGCAAACAGGAGTCACGGAGTGGCTCAAATATCGCTCC
GAGCAAGTTCCGGCAGATACGGAAGAAGAAAAGGAAGAGCGCGACGCCAA
AGCTCTTCTTTCCTGGGCTAGGGCACTGAAGCCTGAAGAGGAGAAGCTAT
CGATAGAAGACTACTTCCAGACTGTAGAGGACGACGAGTACTTTTACGAC
CCAACAACAGGTAATTGGTTGTTTGTGGAAGGCTCGGACGGACGGAAAGC
TGACGCGGAGGACCCCAATGTTGATGGTGGCAGCAACGGTAGCGGCAACG
CTCAGAATTGGATAAATCTGAGTACTGAAGAGGAGGTGGAGATTCCGCCC
GAGTGGGAGCCTATTGTACAACGAATGCTCGAACAGAACAACAAATTTGA
TGACAAAACTCCGCAAACGGATGATGAAGAGGATTCCGGGTCTTCGTCGC
TTTCCGTGTACGTTTAG