Gchil6490.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6490.t1
Unique NameGchil6490.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:82620..83363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36033.XP_001643880.1
PFAMszf-C2H2
Max annot lvl4751|Fungi
Evalue1.66e-06
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3A8AT@33154|Opisthokonta,3P6RV@4751|Fungi,3QJJR@4890|Ascomycota,3RWEH@4891|Saccharomycetes,3S2K2@4893|Saccharomycetaceae
DescriptionZinc finger, C2H2 type
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6490Gchil6490Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 82620..83363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6490.t1Gchil6490.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 82620..83363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6490.t1.stop1Gchil6490.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 82620..82622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6490.t1.CDS1Gchil6490.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 82620..82829 -
Gchil6490.t1.CDS2Gchil6490.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 82920..83363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6490.t1.exon1Gchil6490.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 82620..82829 -
Gchil6490.t1.exon2Gchil6490.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 82920..83363 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6490.t1.intron1Gchil6490.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 82830..82919 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6490.t1.start1Gchil6490.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 83361..83363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6490.t1 ID=Gchil6490.t1|Name=Gchil6490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=218bp
MSFGRGGPSRSNRRKIDDSLSFPVLRLHQHSSSFQALPPAHHHASSSASS
AHLSAPRSYWDTVLSRGPAPEAAQQPSTPDLRSPPNPVSLDASIKDRGSG
VTSSIFRKRSGSLGLVAEPIPDTRRSHASRPFACHLCKGRFERIGHLNAH
IDAVHNSRKPYKCQYENCGKCFSHKSSLYRHVRGIHEKKGHKLPSASSPP
PRPTPAPFRSMNLSKHR*
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spliced messenger RNA

>Gchil6490.t1 ID=Gchil6490.t1|Name=Gchil6490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00004390_pilon:82620..83363- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTCGGTAGAGGCGGTCCTAGCAGGAGTAACAGAAGAAAGATTGA
TGATAGTCTTTCGTTCCCTGTGCTCAGGCTTCATCAACACTCCTCCTCGT
TCCAGGCGCTGCCTCCTGCCCATCACCACGCCTCTTCTTCCGCATCTAGC
GCCCATCTCAGTGCCCCCAGATCATACTGGGATACCGTGCTGTCTCGTGG
CCCCGCTCCTGAAGCTGCACAGCAACCCTCTACGCCTGACCTTCGTTCCC
CTCCCAACCCCGTTTCATTGGATGCATCCATCAAGGACAGGGGTTCTGGC
GTCACCAGCTCTATCTTCCGGAAACGTTCTGGCTCTCTTGGTCTAGTTGC
AGAACCTATCCCCGACACACGTCGAAGCCACGCATCAAGGCCGTTTGCCT
GTCACTTATGCAAAGGCAGGTTTGAGCGCATCGGTCATTTAAACGCCCAC
ATTGACGCGGTTCACAATTCCCGCAAACCATATAAATGCCAGTATGAAAA
TTGCGGAAAGTGTTTCAGCCACAAGTCCAGCCTCTACAGACACGTTAGAG
GTATACATGAGAAGAAAGGTCATAAGCTTCCAAGCGCATCTAGTCCACCT
CCCCGCCCTACTCCTGCCCCGTTTCGTTCTATGAACCTGTCGAAACATCG
ATGA
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protein sequence of Gchil6490.t1

>Gchil6490.t1 ID=Gchil6490.t1|Name=Gchil6490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=218bp
MSFGRGGPSRSNRRKIDDSLSFPVLRLHQHSSSFQALPPAHHHASSSASS
AHLSAPRSYWDTVLSRGPAPEAAQQPSTPDLRSPPNPVSLDASIKDRGSG
VTSSIFRKRSGSLGLVAEPIPDTRRSHASRPFACHLCKGRFERIGHLNAH
IDAVHNSRKPYKCQYENCGKCFSHKSSLYRHVRGIHEKKGHKLPSASSPP
PRPTPAPFRSMNLSKHR*
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mRNA from alignment at tig00004390_pilon:82620..83363-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6490.t1 ID=Gchil6490.t1|Name=Gchil6490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00004390_pilon:82620..83363- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTTCGGTAGAGGCGGTCCTAGCAGGAGTAACAGAAGAAAGATTGA
TGATAGTCTTTCGTTCCCTGTGCTCAGGCTTCATCAACACTCCTCCTCGT
TCCAGGCGCTGCCTCCTGCCCATCACCACGCCTCTTCTTCCGCATCTAGC
GCCCATCTCAGTGCCCCCAGATCATACTGGGATACCGTGCTGTCTCGTGG
CCCCGCTCCTGAAGCTGCACAGCAACCCTCTACGCCTGACCTTCGTTCCC
CTCCCAACCCCGTTTCATTGGATGCATCCATCAAGGACAGGGGTTCTGGC
GTCACCAGCTCTATCTTCCGGAAACGTTCTGGCTCTCTTGGTCTAGTTGC
AGAACCTATCCCCGACACACGTCGAAGCCACGCATCAAGGCCGTTTGCCT
GTCACTTATGCAAAGGCAGGTTTGAGCGCATCGGTCATTTAAACGTATGA
ATCTCAGCAGTCCCTCTCTTCTTTGGGTTTGCTGTTCACAATTCCAAACT
GACAACTTCACACATCATTTGTGTTTTTCTACAGGCCCACATTGACGCGG
TTCACAATTCCCGCAAACCATATAAATGCCAGTATGAAAATTGCGGAAAG
TGTTTCAGCCACAAGTCCAGCCTCTACAGACACGTTAGAGGTATACATGA
GAAGAAAGGTCATAAGCTTCCAAGCGCATCTAGTCCACCTCCCCGCCCTA
CTCCTGCCCCGTTTCGTTCTATGAACCTGTCGAAACATCGATGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:82620..83363-

>Gchil6490.t1 ID=Gchil6490.t1|Name=Gchil6490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00004390_pilon:82620..83363- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCTTCGGTAGAGGCGGTCCTAGCAGGAGTAACAGAAGAAAGATTGA
TGATAGTCTTTCGTTCCCTGTGCTCAGGCTTCATCAACACTCCTCCTCGT
TCCAGGCGCTGCCTCCTGCCCATCACCACGCCTCTTCTTCCGCATCTAGC
GCCCATCTCAGTGCCCCCAGATCATACTGGGATACCGTGCTGTCTCGTGG
CCCCGCTCCTGAAGCTGCACAGCAACCCTCTACGCCTGACCTTCGTTCCC
CTCCCAACCCCGTTTCATTGGATGCATCCATCAAGGACAGGGGTTCTGGC
GTCACCAGCTCTATCTTCCGGAAACGTTCTGGCTCTCTTGGTCTAGTTGC
AGAACCTATCCCCGACACACGTCGAAGCCACGCATCAAGGCCGTTTGCCT
GTCACTTATGCAAAGGCAGGTTTGAGCGCATCGGTCATTTAAACGCCCAC
ATTGACGCGGTTCACAATTCCCGCAAACCATATAAATGCCAGTATGAAAA
TTGCGGAAAGTGTTTCAGCCACAAGTCCAGCCTCTACAGACACGTTAGAG
GTATACATGAGAAGAAAGGTCATAAGCTTCCAAGCGCATCTAGTCCACCT
CCCCGCCCTACTCCTGCCCCGTTTCGTTCTATGAACCTGTCGAAACATCG
ATGA
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