Gchil6644.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6644.t1
Unique NameGchil6644.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length139
Homology
BLAST of Gchil6644.t1 vs. uniprot
Match: A0A2V3J036_9FLOR (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 1.990e-71
Identity = 104/130 (80.00%), Postives = 117/130 (90.00%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERLEEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKYTEDMQRADIYFSFGGLLMKLHDD 130
            MAGIIFSDSFKI RLDWDEKTKSV KKFDKVSRIEGKSEAY+TE+ LD+NTE+YPVS  E I++LITERLE+ PPNPDDP GYNP+KPLGDRA+ Y+YIM GKIFKY E+ QRA+IYFSFGGLLMKLH +
Sbjct:    1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGE 130          
BLAST of Gchil6644.t1 vs. uniprot
Match: UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58)

HSP 1 Score: 100 bits (249), Expect = 2.230e-24
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAGI+F D F +  +D       + KKFD+VSR+  +SE+++ E+ LD+NT++YPV +G+   L+I   L E+G P+  D   YNPV     RA+ ++Y+M GK+++       TE   R   Y S+GGLLM+L  D  ++ 
Sbjct:    1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLH 133          
BLAST of Gchil6644.t1 vs. uniprot
Match: E3TEV3_ICTPU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Clupeocephala TaxID=186625 RepID=E3TEV3_ICTPU)

HSP 1 Score: 97.1 bits (240), Expect = 5.060e-23
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERLEEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ ++ LD+NT++YPV +G+   L+I   L E      D   YNP      RA+ +DY M GK++K       TE   R   Y S+GGLLM+L  D  ++ 
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIASTLYED--GTSDDGEYNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLH 133          
BLAST of Gchil6644.t1 vs. uniprot
Match: A0A3P8RBI7_ASTCA (RNA polymerase II subunit H n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8RBI7_ASTCA)

HSP 1 Score: 97.1 bits (240), Expect = 1.070e-22
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ ++ LD+N ++YPV +G+   L+I   L E+G   PDD   YNP      RA+ +DY+M GK++K       TE   R   Y S+GGLLM+L  D  ++ 
Sbjct:   30 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDG--TPDDGE-YNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLH 162          
BLAST of Gchil6644.t1 vs. uniprot
Match: Q568H8_DANRE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=128 Tax=Gnathostomata TaxID=7776 RepID=Q568H8_DANRE)

HSP 1 Score: 95.9 bits (237), Expect = 1.430e-22
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ ++ LD+N ++YPV +G+   L+I   L E+G   PDD   YNP      RA+ +DY+M GK+++       TE   R   Y S+GGLLM+L  D  ++ 
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDG--TPDDGE-YNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLH 133          
BLAST of Gchil6644.t1 vs. uniprot
Match: A0A1B0CWD7_LUTLO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO)

HSP 1 Score: 95.9 bits (237), Expect = 1.430e-22
Identity = 53/142 (37.32%), Postives = 85/142 (59.86%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFK------YTEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAG++F D F +  +D +       KKFD+VSR+  +SE+++ ++ LDIN  LYP+ +G+   L++   L E+G P   +   YNP++  G RA+ ++Y+M GKI++      +TE   R   Y SFGGLLM+L  D  ++ 
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNLH 133          
BLAST of Gchil6644.t1 vs. uniprot
Match: A0A6P5A3K3_BRABE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A3K3_BRABE)

HSP 1 Score: 95.1 bits (235), Expect = 2.860e-22
Identity = 51/142 (35.92%), Postives = 84/142 (59.15%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFK------YTEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAG++F D F +  +D D       KKFD+VSR+  +SE+++ E+ LD+NT++YPV +G+   L++   L E+G P+  +   + P      RA+ ++Y+M GKI++      +TE   R   Y S+GGLLM+L  D  ++ 
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMELILDVNTQVYPVDIGDKFRLVLASTLREDGAPDDGE---FIPTDGTPSRADQFEYVMYGKIYRIEGDDTHTESATRLSAYVSYGGLLMRLQGDANNLH 133          
BLAST of Gchil6644.t1 vs. uniprot
Match: A0A3P8WE80_CYNSE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WE80_CYNSE)

HSP 1 Score: 95.1 bits (235), Expect = 3.260e-22
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHDDMESIE 135
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ ++ LD+N +++PV +G+   L+I   L E+G   PDD   YNP      RA+ +DY+M GK++K       TE   R   Y S+GGLLM+L  D  ++ 
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIFPVDLGDKFRLVIASTLYEDG--TPDDGE-YNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYASYGGLLMRLQGDANNLH 133          
BLAST of Gchil6644.t1 vs. uniprot
Match: Q9VNZ3_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=28 Tax=Schizophora TaxID=43738 RepID=Q9VNZ3_DROME)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-21
Identity = 52/141 (36.88%), Postives = 85/141 (60.28%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERL-EEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKYTED-----MQRADIYFSFGGLLMKLHDDMESIE 135
            MAG++F D F +  +D +       KKFD+VSR+  +SE+++ ++ LDIN+ LYP+ +G+   L++   L E+G P+  +   YNP++  G RA+ ++Y+M GKI++   D       R   Y SFGGLLM+L  D  ++ 
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGCPDSGE---YNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMRLQGDANNLH 132          
BLAST of Gchil6644.t1 vs. uniprot
Match: A0A2B4S6K0_STYPI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=4 Tax=Scleractinia TaxID=6125 RepID=A0A2B4S6K0_STYPI)

HSP 1 Score: 93.2 bits (230), Expect = 1.620e-21
Identity = 52/141 (36.88%), Postives = 80/141 (56.74%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDINTELYPVSVGETIELLITERLEEGPPNPDDPRGYNPVKPLGDRANMYDYIMRGKIFKYTEDMQRADI------YFSFGGLLMKLHDDMESIE 135
            MAG++F D F +  +D +       KKFD+VSR+  +SE+++ ++ LD+NT++YPV  GE   L++   L E    PDD   YNP      RA+ ++Y+M GK+++   D    D       Y SFGGLLM+L  D  ++ 
Sbjct:    1 MAGVLFEDIFDVKDIDPE------GKKFDRVSRLHCESESFKMDLILDVNTQIYPVDYGEKFRLVLANTLREDG-TPDDGE-YNPSDSGPSRADQFEYVMYGKVYRIEGDESGVDAPTRLAAYVSFGGLLMRLQGDANNLH 133          
The following BLAST results are available for this feature:
BLAST of Gchil6644.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J036_9FLOR1.990e-7180.00DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001CFABD582.230e-2438.73DNA-directed RNA polymerases I, II, and III subuni... [more]
E3TEV3_ICTPU5.060e-2338.30DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A3P8RBI7_ASTCA1.070e-2239.44RNA polymerase II subunit H n=1 Tax=Astatotilapia ... [more]
Q568H8_DANRE1.430e-2238.73DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1B0CWD7_LUTLO1.430e-2237.32DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A6P5A3K3_BRABE2.860e-2235.92DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A3P8WE80_CYNSE3.260e-2238.73DNA-directed RNA polymerases I, II, and III subuni... [more]
Q9VNZ3_DROME1.110e-2136.88DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A2B4S6K0_STYPI1.620e-2136.88DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..136
e-value: 3.4E-24
score: 96.4
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 23..134
e-value: 6.1E-30
score: 104.2
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..137
e-value: 1.7E-33
score: 113.6
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..134
NoneNo IPR availableGENE3D2.40.50.140coord: 6..137
e-value: 8.5E-34
score: 118.6
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..134
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1310926..1311672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6644.t1Gchil6644.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 1310926..1311672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6644.t1 ID=Gchil6644.t1|Name=Gchil6644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=139bp
MAGIIFSDSFKIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEMTLDIN
TELYPVSVGETIELLITERLEEGPPNPDDPRGYNPVKPLGDRANMYDYIM
RGKIFKYTEDMQRADIYFSFGGLLMKLHDDMESIELLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold