Gchil6635.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6635.t1
Unique NameGchil6635.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1137137..1138252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_025308m
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue6.37e-06
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,382XV@33090|Viridiplantae,3GRBU@35493|Streptophyta,4JVCQ@91835|fabids
DescriptionZinc finger, C3HC4 type (RING finger)
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6635Gchil6635Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 1137137..1138252 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6635.t1.stop1Gchil6635.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 1137137..1137139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6635.t1.CDS1Gchil6635.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1137137..1138252 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6635.t1.exon1Gchil6635.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1137137..1138252 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6635.t1.start1Gchil6635.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 1138250..1138252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6635.t1Gchil6635.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 1137137..1138252 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6635.t1 ID=Gchil6635.t1|Name=Gchil6635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp
MRVLPTAQYAFRQAATELPSTVFPSAIRTLASIIASVTIIITIYLGYRKC
IRGRDDSFSVRRNHQEPFGIPLTSYDAPGSAYSDEYLPVYVGNGRYIYVS
RNELPRDPPNVMRRDSRAPTHFDAGTLTKFEAANDEKHQSCAICLEQLQE
EPVSAGQCLHLMHNNCLTSWLNKDASSNCPVCRVRIEESASFDELQGKVF
EISSLALPARTRDSLEGSNLETGIGAQAGAFLTDNVASLRAEADSASHRI
PNDPTEIENENNMERESPQLENSGRPLEGEVHDQTAETDSASHQIPNDPM
ENDSEIHTEWESPQLEDSGRPLEGEIHDQSGLDTSGASSLPMQEIGGRPM
GNRSREMSSIDNDREVAVANK*
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spliced messenger RNA

>Gchil6635.t1 ID=Gchil6635.t1|Name=Gchil6635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00004390_pilon:1137137..1138252- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGTGTTGCCGACCGCGCAATATGCGTTTCGTCAGGCCGCTACAGA
GCTGCCATCTACGGTGTTTCCTTCAGCAATTCGGACGTTGGCTTCGATTA
TCGCTTCAGTAACAATAATAATTACTATCTATCTTGGATATCGAAAATGC
ATCAGGGGTCGAGATGATAGTTTCAGTGTCCGTCGAAACCACCAAGAACC
ATTTGGTATTCCTCTTACATCTTACGATGCACCGGGAAGCGCGTATTCAG
ACGAGTATTTGCCGGTGTACGTTGGGAATGGAAGATATATTTACGTATCA
CGCAATGAGCTTCCTCGTGACCCTCCAAATGTTATGCGACGAGATTCAAG
AGCTCCAACACATTTCGATGCGGGAACCCTTACAAAGTTCGAAGCGGCAA
ACGACGAAAAGCACCAATCATGTGCGATATGTCTCGAACAACTACAGGAA
GAACCTGTGAGTGCTGGTCAGTGCTTGCACCTCATGCACAACAACTGTCT
CACAAGTTGGTTGAACAAGGATGCAAGCTCGAATTGTCCAGTGTGCCGGG
TTCGTATTGAGGAAAGCGCGTCCTTCGATGAATTACAGGGGAAGGTGTTT
GAAATAAGTTCTTTGGCTCTACCTGCGCGAACTCGCGATTCATTGGAAGG
TTCAAACTTGGAAACCGGGATTGGTGCACAGGCCGGTGCGTTTTTGACTG
ACAATGTTGCTAGTCTTCGGGCTGAGGCCGACTCAGCGTCCCATCGGATA
CCAAATGACCCTACAGAGATCGAAAACGAGAACAACATGGAAAGGGAAAG
CCCACAGCTGGAGAATTCGGGACGGCCTCTGGAGGGTGAAGTCCATGACC
AGACGGCAGAAACCGACTCAGCATCCCATCAGATACCAAATGACCCTATG
GAAAACGACAGCGAGATCCACACGGAATGGGAAAGCCCGCAGCTGGAGGA
TTCGGGACGGCCTTTGGAGGGTGAAATTCATGACCAGTCGGGGTTGGATA
CGTCTGGCGCTAGCTCGTTGCCGATGCAAGAAATCGGAGGGCGACCAATG
GGCAACAGATCAAGGGAGATGAGCTCGATAGATAACGATCGTGAAGTGGC
AGTGGCGAACAAATAG
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protein sequence of Gchil6635.t1

>Gchil6635.t1 ID=Gchil6635.t1|Name=Gchil6635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=372bp
MRVLPTAQYAFRQAATELPSTVFPSAIRTLASIIASVTIIITIYLGYRKC
IRGRDDSFSVRRNHQEPFGIPLTSYDAPGSAYSDEYLPVYVGNGRYIYVS
RNELPRDPPNVMRRDSRAPTHFDAGTLTKFEAANDEKHQSCAICLEQLQE
EPVSAGQCLHLMHNNCLTSWLNKDASSNCPVCRVRIEESASFDELQGKVF
EISSLALPARTRDSLEGSNLETGIGAQAGAFLTDNVASLRAEADSASHRI
PNDPTEIENENNMERESPQLENSGRPLEGEVHDQTAETDSASHQIPNDPM
ENDSEIHTEWESPQLEDSGRPLEGEIHDQSGLDTSGASSLPMQEIGGRPM
GNRSREMSSIDNDREVAVANK*
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mRNA from alignment at tig00004390_pilon:1137137..1138252-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6635.t1 ID=Gchil6635.t1|Name=Gchil6635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00004390_pilon:1137137..1138252- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGTGTTGCCGACCGCGCAATATGCGTTTCGTCAGGCCGCTACAGA
GCTGCCATCTACGGTGTTTCCTTCAGCAATTCGGACGTTGGCTTCGATTA
TCGCTTCAGTAACAATAATAATTACTATCTATCTTGGATATCGAAAATGC
ATCAGGGGTCGAGATGATAGTTTCAGTGTCCGTCGAAACCACCAAGAACC
ATTTGGTATTCCTCTTACATCTTACGATGCACCGGGAAGCGCGTATTCAG
ACGAGTATTTGCCGGTGTACGTTGGGAATGGAAGATATATTTACGTATCA
CGCAATGAGCTTCCTCGTGACCCTCCAAATGTTATGCGACGAGATTCAAG
AGCTCCAACACATTTCGATGCGGGAACCCTTACAAAGTTCGAAGCGGCAA
ACGACGAAAAGCACCAATCATGTGCGATATGTCTCGAACAACTACAGGAA
GAACCTGTGAGTGCTGGTCAGTGCTTGCACCTCATGCACAACAACTGTCT
CACAAGTTGGTTGAACAAGGATGCAAGCTCGAATTGTCCAGTGTGCCGGG
TTCGTATTGAGGAAAGCGCGTCCTTCGATGAATTACAGGGGAAGGTGTTT
GAAATAAGTTCTTTGGCTCTACCTGCGCGAACTCGCGATTCATTGGAAGG
TTCAAACTTGGAAACCGGGATTGGTGCACAGGCCGGTGCGTTTTTGACTG
ACAATGTTGCTAGTCTTCGGGCTGAGGCCGACTCAGCGTCCCATCGGATA
CCAAATGACCCTACAGAGATCGAAAACGAGAACAACATGGAAAGGGAAAG
CCCACAGCTGGAGAATTCGGGACGGCCTCTGGAGGGTGAAGTCCATGACC
AGACGGCAGAAACCGACTCAGCATCCCATCAGATACCAAATGACCCTATG
GAAAACGACAGCGAGATCCACACGGAATGGGAAAGCCCGCAGCTGGAGGA
TTCGGGACGGCCTTTGGAGGGTGAAATTCATGACCAGTCGGGGTTGGATA
CGTCTGGCGCTAGCTCGTTGCCGATGCAAGAAATCGGAGGGCGACCAATG
GGCAACAGATCAAGGGAGATGAGCTCGATAGATAACGATCGTGAAGTGGC
AGTGGCGAACAAATAG
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Coding sequence (CDS) from alignment at tig00004390_pilon:1137137..1138252-

>Gchil6635.t1 ID=Gchil6635.t1|Name=Gchil6635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00004390_pilon:1137137..1138252- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAGTGTTGCCGACCGCGCAATATGCGTTTCGTCAGGCCGCTACAGA
GCTGCCATCTACGGTGTTTCCTTCAGCAATTCGGACGTTGGCTTCGATTA
TCGCTTCAGTAACAATAATAATTACTATCTATCTTGGATATCGAAAATGC
ATCAGGGGTCGAGATGATAGTTTCAGTGTCCGTCGAAACCACCAAGAACC
ATTTGGTATTCCTCTTACATCTTACGATGCACCGGGAAGCGCGTATTCAG
ACGAGTATTTGCCGGTGTACGTTGGGAATGGAAGATATATTTACGTATCA
CGCAATGAGCTTCCTCGTGACCCTCCAAATGTTATGCGACGAGATTCAAG
AGCTCCAACACATTTCGATGCGGGAACCCTTACAAAGTTCGAAGCGGCAA
ACGACGAAAAGCACCAATCATGTGCGATATGTCTCGAACAACTACAGGAA
GAACCTGTGAGTGCTGGTCAGTGCTTGCACCTCATGCACAACAACTGTCT
CACAAGTTGGTTGAACAAGGATGCAAGCTCGAATTGTCCAGTGTGCCGGG
TTCGTATTGAGGAAAGCGCGTCCTTCGATGAATTACAGGGGAAGGTGTTT
GAAATAAGTTCTTTGGCTCTACCTGCGCGAACTCGCGATTCATTGGAAGG
TTCAAACTTGGAAACCGGGATTGGTGCACAGGCCGGTGCGTTTTTGACTG
ACAATGTTGCTAGTCTTCGGGCTGAGGCCGACTCAGCGTCCCATCGGATA
CCAAATGACCCTACAGAGATCGAAAACGAGAACAACATGGAAAGGGAAAG
CCCACAGCTGGAGAATTCGGGACGGCCTCTGGAGGGTGAAGTCCATGACC
AGACGGCAGAAACCGACTCAGCATCCCATCAGATACCAAATGACCCTATG
GAAAACGACAGCGAGATCCACACGGAATGGGAAAGCCCGCAGCTGGAGGA
TTCGGGACGGCCTTTGGAGGGTGAAATTCATGACCAGTCGGGGTTGGATA
CGTCTGGCGCTAGCTCGTTGCCGATGCAAGAAATCGGAGGGCGACCAATG
GGCAACAGATCAAGGGAGATGAGCTCGATAGATAACGATCGTGAAGTGGC
AGTGGCGAACAAATAG
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