Gchil6635.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6635.t1
Unique NameGchil6635.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length372
Homology
BLAST of Gchil6635.t1 vs. uniprot
Match: A0A2V3J060_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J060_9FLOR)

HSP 1 Score: 228 bits (581), Expect = 4.540e-69
Identity = 117/205 (57.07%), Postives = 145/205 (70.73%), Query Frame = 0
Query:    1 MRVLPTAQ-YAFRQAATELPSTVFPSAIRTLASIIASVTIIITIYLGYRKCIRGRDDSFSVRRNHQEPFGIPLTSYDAPGSAYSDEYLPVYVGNGRYIYVSRNELPRDPPNVMRRDSRAPTHFDAGTLTKFEAANDEKHQSCAICLEQLQEEPVSAGQCLHLMHNNCLTSWLNKDASSNCPVCRVRIEESASFDELQGKVFEISS 204
            M VL T Q    RQ+A ++ ST FP+AIRTLAS++ASVT+++TIYLGY+KC R R DSF   R  +   G PLTS D   + + D  +PVYVG GRY+Y+SR+E+PR P +V+R +S     FDA +L  FEA   E+ Q+CAICLEQL+EE VSAGQCLHLMH NCL SWL KD +SNCPVCRVRI ESAS + L  +   I S
Sbjct:    1 MPVLLTVQRLVSRQSAVDVGSTSFPAAIRTLASVVASVTMVVTIYLGYKKCFRNRLDSFEAERRREAAHGFPLTSLDQGSNGFED-LVPVYVGEGRYMYISRDEIPRRPQHVVRVNSVHSPRFDADSLKIFEAGPSERQQACAICLEQLEEETVSAGQCLHLMHTNCLASWLRKDINSNCPVCRVRIFESASLESLGERAVGIPS 204          
BLAST of Gchil6635.t1 vs. uniprot
Match: R7QEA0_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEA0_CHOCR)

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-16
Identity = 54/130 (41.54%), Postives = 69/130 (53.08%), Query Frame = 0
Query:   62 RNHQEPFGIPLTSYDAPGSAYSDEYLPVYVGNGRYIYVSRNELPRDPPNVMRRDSRAPTHFDAGTLTKFEAANDEKHQSCAICLEQLQEEPVSAGQCLHLMHNNCLTSWLNKDASSNCPVCRVRIEESAS 191
            RN   P  IP    DAPG  +S  Y P +V   R   V+  E            +R+   F+   L   E ++ +K   C ICL  L+EEPVS GQCLHLMH++CL SWL KD  S CPVCRV   ++A+
Sbjct:  118 RNMHLPNAIP----DAPG--WSQIY-PQHVVGARSRVVTTEE------------TRSTPRFNPEDLVSMEVSDRDKGNPCPICLGALEEEPVSTGQCLHLMHSSCLKSWLAKDTKSACPVCRVSYVQNAA 228          
BLAST of Gchil6635.t1 vs. uniprot
Match: A0A2V3IYA4_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYA4_9FLOR)

HSP 1 Score: 80.1 bits (196), Expect = 3.680e-14
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   93 NGRYIYVSRNELPRDPPNVMRRDSRAPTHFD--AGTLTKFEAANDEKHQSCAICLEQLQEEPVSAGQCLHLMHNNCLTSWLNKDASSNCPVCRVRIEESA 190
            NG  + +SR    R   NV RR S      +    +L  F AA  ++   C +CLE L    VS+GQCLH++H +CL +WL KD  + CPVCRV IEE A
Sbjct:   83 NGTAVEISR----RTDTNV-RRTSHGNRSINEVVNSLASFRAAEKDRALPCTVCLEDLGSRGVSSGQCLHVIHTDCLQTWLAKDKKNACPVCRVPIEEGA 177          
BLAST of Gchil6635.t1 vs. uniprot
Match: A0A2V3J0E8_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E8_9FLOR)

HSP 1 Score: 68.6 bits (166), Expect = 2.440e-10
Identity = 38/98 (38.78%), Postives = 52/98 (53.06%), Query Frame = 0
Query:   78 PGSAYSDEYLPVYVGNGRYIYVSRNELPRDPPNVMRRDSRAPTHFDAGTLTKFEAANDEKHQSCAICLEQLQEEPVSAGQCLHLMHNNCLTSWLNKDA 175
            P +A+   Y P+YV    +    ++     PP +   D R     D   L  F+A   EK+  C ICL  L++E VS GQCLHL+H +CL SWL KD+
Sbjct:   24 PRAAHHIHYNPMYVSAAPH----QSHPSAAPPELQ--DPR----IDVDDLLSFDAPEKEKNNPCPICLAPLEDEQVSTGQCLHLIHTSCLRSWLAKDS 111          
The following BLAST results are available for this feature:
BLAST of Gchil6635.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J060_9FLOR4.540e-6957.07RING-type domain-containing protein n=1 Tax=Gracil... [more]
R7QEA0_CHOCR1.300e-1641.54RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A2V3IYA4_9FLOR3.680e-1443.00RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J0E8_9FLOR2.440e-1038.78RING-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 141..182
e-value: 1.7E-6
score: 37.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 140..183
e-value: 1.8E-9
score: 37.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 141..183
score: 12.799091
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 124..206
e-value: 2.3E-14
score: 54.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..327
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..371
NoneNo IPR availableCDDcd16448RING-H2coord: 141..183
e-value: 9.11984E-12
score: 57.4619
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 133..189
NoneNo IPR availableTMHMMTMhelixcoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1137137..1138252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6635.t1Gchil6635.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 1137137..1138252 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6635.t1 ID=Gchil6635.t1|Name=Gchil6635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=372bp
MRVLPTAQYAFRQAATELPSTVFPSAIRTLASIIASVTIIITIYLGYRKC
IRGRDDSFSVRRNHQEPFGIPLTSYDAPGSAYSDEYLPVYVGNGRYIYVS
RNELPRDPPNVMRRDSRAPTHFDAGTLTKFEAANDEKHQSCAICLEQLQE
EPVSAGQCLHLMHNNCLTSWLNKDASSNCPVCRVRIEESASFDELQGKVF
EISSLALPARTRDSLEGSNLETGIGAQAGAFLTDNVASLRAEADSASHRI
PNDPTEIENENNMERESPQLENSGRPLEGEVHDQTAETDSASHQIPNDPM
ENDSEIHTEWESPQLEDSGRPLEGEIHDQSGLDTSGASSLPMQEIGGRPM
GNRSREMSSIDNDREVAVANK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD