Gchil8288.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8288.t1
Unique NameGchil8288.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length709
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1108646..1110868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3702.AT4G21530.1
PFAMsANAPC4,ANAPC4_WD40
Max annot lvl35493|Streptophyta
KEGG koko:K03351
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0035670,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0090567,GO:0099402
Evalue1.43e-07
EggNOG OGsCOG1597@1|root,KOG4640@1|root,KOG1116@2759|Eukaryota,KOG4640@2759|Eukaryota,37N8V@33090|Viridiplantae,3GBPP@35493|Streptophyta,3HQ5D@3699|Brassicales
DescriptionAnaphase-promoting complex, cyclosome, subunit 4
COG categoryDIOT
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8288Gchil8288Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1108646..1110868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1Gchil8288.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1108646..1110868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1.stop1Gchil8288.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1108646..1108648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1.CDS1Gchil8288.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1108646..1108703 -
Gchil8288.t1.CDS2Gchil8288.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1108800..1110868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1.exon1Gchil8288.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1108646..1108703 -
Gchil8288.t1.exon2Gchil8288.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1108800..1110868 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1.intron1Gchil8288.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1108704..1108799 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1.start1Gchil8288.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1110866..1110868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8288.t1 ID=Gchil8288.t1|Name=Gchil8288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=709bp
MEFEGHQTAPAPAVLYERSFSAAVSDVKICPNARLFAVVLDRVSIAIFRI
NCHRLATISVCTKEQETITSYNWSPDGANIVVASSSANLSIYSIDRCSLS
ASRTRRSLRDSDIVATVTLPASASCLAWSSISGAPPEIQRRFDYAAGYQD
RASVFYDNSLTLSHVAPGGLLLVGDEEGCLTLYTHDLQLKIARVQILPKD
VAVHRVLMSPNHSYALSLAYQSSCNEEGDSGASRCFIRVLNLQPVSEYWP
EIYRVNMESVSTNVIKQSFSDAIARLQKEWKEGAMNVLTARIQKSIEKRM
KDFAEDVKKRNAWGALHDTYCGAFMKSALLQFLGTDLSESGAKEALRSFR
AHADDVEETIVKTLPIAEKMMFRASEYRGLARMKWRFAPVGVLLDEANEM
FEASEAFYLALQELMYESQKMSREAEAFLAWLVIAAAKAGGASVERRDQA
VTLDNMSTKDRQLVSDFLERMSGDIGNKPKLGDSVSDLLNSRLARAYQKF
EEVVQSVFQTPAREITTQLEVCGELLLASGPNRYVRPYFSKRETVVFSSE
KQQILFCLTQCDGSLMFIQYDLQSQRWKVCRADVVLEKVKMLVKHAACVR
EDEILILGEIADKAGEINQPRACLAFYHRVSQIELFNGRDDSFRGGDLDL
TSVSVSKKLQTRESSMLHVGQPLSELEAALSAVNDNRFASILIKPNKVSI
VGFEHDAF*
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spliced messenger RNA

>Gchil8288.t1 ID=Gchil8288.t1|Name=Gchil8288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00004384_pilon:1108646..1110868- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTCGAAGGACATCAGACTGCACCTGCACCTGCTGTCTTATACGA
ACGGTCCTTCTCAGCTGCCGTTTCCGATGTAAAAATTTGTCCCAATGCCC
GCTTGTTCGCAGTTGTTCTGGATCGCGTGTCCATCGCGATCTTCAGAATT
AATTGTCATCGACTGGCAACTATCTCTGTGTGCACCAAGGAGCAAGAGAC
AATAACGTCGTACAATTGGTCCCCGGATGGAGCCAACATTGTAGTGGCTT
CATCCAGTGCAAATCTTTCGATTTATTCCATAGACCGATGCTCTTTGTCT
GCATCAAGGACAAGGCGATCATTGAGAGACTCCGATATCGTGGCCACCGT
AACTTTGCCGGCCAGTGCCTCTTGTCTTGCATGGTCCTCTATTTCTGGCG
CACCGCCCGAAATCCAACGCCGGTTTGATTATGCTGCAGGATACCAAGAT
CGCGCTTCTGTTTTTTATGACAACAGTTTGACGTTGAGTCATGTTGCACC
TGGGGGACTCTTGCTTGTTGGAGACGAAGAAGGTTGCCTCACATTGTACA
CGCACGATCTGCAACTCAAAATTGCGCGAGTCCAAATACTGCCAAAAGAT
GTAGCCGTGCACCGCGTCCTGATGAGCCCCAATCATTCTTACGCCCTTTC
TCTTGCATACCAGTCATCCTGTAATGAAGAGGGTGATTCAGGAGCAAGTC
GATGCTTTATACGAGTTTTAAACCTACAACCCGTTTCTGAGTACTGGCCC
GAGATATATCGAGTTAATATGGAGAGTGTGAGCACCAATGTCATTAAGCA
GAGTTTTTCAGACGCAATTGCCCGACTTCAAAAAGAATGGAAAGAAGGTG
CGATGAACGTGCTCACTGCAAGAATTCAGAAATCGATAGAAAAGCGGATG
AAAGATTTTGCCGAAGACGTGAAGAAGAGAAACGCTTGGGGTGCTCTTCA
TGATACGTATTGCGGTGCTTTCATGAAGTCTGCATTACTGCAGTTCCTCG
GAACTGATCTCAGCGAAAGTGGGGCTAAAGAGGCGCTCCGTTCATTTCGT
GCGCATGCTGACGATGTCGAAGAAACCATTGTAAAAACGCTGCCAATTGC
CGAGAAAATGATGTTTCGGGCCTCTGAGTACCGAGGACTAGCTCGAATGA
AATGGAGATTCGCGCCCGTGGGTGTTTTGTTGGACGAGGCCAACGAAATG
TTTGAAGCGTCAGAAGCCTTCTATTTGGCATTACAAGAACTGATGTATGA
AAGCCAAAAGATGTCGCGGGAAGCTGAAGCATTCTTAGCATGGCTTGTAA
TAGCAGCTGCTAAAGCCGGTGGAGCATCTGTCGAGAGAAGAGACCAAGCA
GTGACTCTGGATAATATGAGCACCAAGGATAGACAGCTTGTGTCGGATTT
CTTAGAGAGAATGAGTGGAGATATTGGAAACAAGCCGAAATTGGGGGACT
CTGTGTCTGACCTTCTTAATTCTCGATTAGCCAGGGCTTATCAGAAGTTT
GAAGAGGTTGTCCAATCGGTTTTTCAAACGCCCGCTAGAGAGATTACTAC
CCAACTGGAAGTTTGTGGGGAGCTTTTGTTAGCTTCTGGACCAAACCGTT
ATGTTAGACCGTATTTTTCCAAGAGAGAAACGGTTGTATTTAGCTCTGAA
AAACAGCAAATTCTTTTTTGTTTGACGCAATGTGACGGATCCCTGATGTT
CATTCAGTACGATTTGCAGAGTCAACGGTGGAAGGTATGTAGAGCGGACG
TCGTTCTTGAGAAGGTGAAAATGCTTGTAAAACACGCCGCGTGCGTCAGG
GAGGATGAGATATTGATACTTGGAGAAATAGCGGACAAAGCTGGCGAAAT
CAACCAACCACGTGCATGTTTAGCTTTCTACCACAGAGTTTCGCAAATTG
AGCTCTTCAATGGGCGCGACGATAGCTTTAGAGGCGGGGATTTGGACCTG
ACCTCAGTTTCTGTATCAAAGAAGTTGCAAACCCGAGAGTCGTCCATGTT
GCATGTCGGACAACCACTATCGGAATTAGAAGCAGCATTGAGCGCGGTGA
ATGACAACAGGTTTGCAAGCATATTGATCAAGCCGAACAAAGTCTCTATT
GTTGGTTTTGAGCACGATGCGTTCTAG
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protein sequence of Gchil8288.t1

>Gchil8288.t1 ID=Gchil8288.t1|Name=Gchil8288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=709bp
MEFEGHQTAPAPAVLYERSFSAAVSDVKICPNARLFAVVLDRVSIAIFRI
NCHRLATISVCTKEQETITSYNWSPDGANIVVASSSANLSIYSIDRCSLS
ASRTRRSLRDSDIVATVTLPASASCLAWSSISGAPPEIQRRFDYAAGYQD
RASVFYDNSLTLSHVAPGGLLLVGDEEGCLTLYTHDLQLKIARVQILPKD
VAVHRVLMSPNHSYALSLAYQSSCNEEGDSGASRCFIRVLNLQPVSEYWP
EIYRVNMESVSTNVIKQSFSDAIARLQKEWKEGAMNVLTARIQKSIEKRM
KDFAEDVKKRNAWGALHDTYCGAFMKSALLQFLGTDLSESGAKEALRSFR
AHADDVEETIVKTLPIAEKMMFRASEYRGLARMKWRFAPVGVLLDEANEM
FEASEAFYLALQELMYESQKMSREAEAFLAWLVIAAAKAGGASVERRDQA
VTLDNMSTKDRQLVSDFLERMSGDIGNKPKLGDSVSDLLNSRLARAYQKF
EEVVQSVFQTPAREITTQLEVCGELLLASGPNRYVRPYFSKRETVVFSSE
KQQILFCLTQCDGSLMFIQYDLQSQRWKVCRADVVLEKVKMLVKHAACVR
EDEILILGEIADKAGEINQPRACLAFYHRVSQIELFNGRDDSFRGGDLDL
TSVSVSKKLQTRESSMLHVGQPLSELEAALSAVNDNRFASILIKPNKVSI
VGFEHDAF*
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mRNA from alignment at tig00004384_pilon:1108646..1110868-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8288.t1 ID=Gchil8288.t1|Name=Gchil8288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00004384_pilon:1108646..1110868- (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTCGAAGGACATCAGACTGCACCTGCACCTGCTGTCTTATACGA
ACGGTCCTTCTCAGCTGCCGTTTCCGATGTAAAAATTTGTCCCAATGCCC
GCTTGTTCGCAGTTGTTCTGGATCGCGTGTCCATCGCGATCTTCAGAATT
AATTGTCATCGACTGGCAACTATCTCTGTGTGCACCAAGGAGCAAGAGAC
AATAACGTCGTACAATTGGTCCCCGGATGGAGCCAACATTGTAGTGGCTT
CATCCAGTGCAAATCTTTCGATTTATTCCATAGACCGATGCTCTTTGTCT
GCATCAAGGACAAGGCGATCATTGAGAGACTCCGATATCGTGGCCACCGT
AACTTTGCCGGCCAGTGCCTCTTGTCTTGCATGGTCCTCTATTTCTGGCG
CACCGCCCGAAATCCAACGCCGGTTTGATTATGCTGCAGGATACCAAGAT
CGCGCTTCTGTTTTTTATGACAACAGTTTGACGTTGAGTCATGTTGCACC
TGGGGGACTCTTGCTTGTTGGAGACGAAGAAGGTTGCCTCACATTGTACA
CGCACGATCTGCAACTCAAAATTGCGCGAGTCCAAATACTGCCAAAAGAT
GTAGCCGTGCACCGCGTCCTGATGAGCCCCAATCATTCTTACGCCCTTTC
TCTTGCATACCAGTCATCCTGTAATGAAGAGGGTGATTCAGGAGCAAGTC
GATGCTTTATACGAGTTTTAAACCTACAACCCGTTTCTGAGTACTGGCCC
GAGATATATCGAGTTAATATGGAGAGTGTGAGCACCAATGTCATTAAGCA
GAGTTTTTCAGACGCAATTGCCCGACTTCAAAAAGAATGGAAAGAAGGTG
CGATGAACGTGCTCACTGCAAGAATTCAGAAATCGATAGAAAAGCGGATG
AAAGATTTTGCCGAAGACGTGAAGAAGAGAAACGCTTGGGGTGCTCTTCA
TGATACGTATTGCGGTGCTTTCATGAAGTCTGCATTACTGCAGTTCCTCG
GAACTGATCTCAGCGAAAGTGGGGCTAAAGAGGCGCTCCGTTCATTTCGT
GCGCATGCTGACGATGTCGAAGAAACCATTGTAAAAACGCTGCCAATTGC
CGAGAAAATGATGTTTCGGGCCTCTGAGTACCGAGGACTAGCTCGAATGA
AATGGAGATTCGCGCCCGTGGGTGTTTTGTTGGACGAGGCCAACGAAATG
TTTGAAGCGTCAGAAGCCTTCTATTTGGCATTACAAGAACTGATGTATGA
AAGCCAAAAGATGTCGCGGGAAGCTGAAGCATTCTTAGCATGGCTTGTAA
TAGCAGCTGCTAAAGCCGGTGGAGCATCTGTCGAGAGAAGAGACCAAGCA
GTGACTCTGGATAATATGAGCACCAAGGATAGACAGCTTGTGTCGGATTT
CTTAGAGAGAATGAGTGGAGATATTGGAAACAAGCCGAAATTGGGGGACT
CTGTGTCTGACCTTCTTAATTCTCGATTAGCCAGGGCTTATCAGAAGTTT
GAAGAGGTTGTCCAATCGGTTTTTCAAACGCCCGCTAGAGAGATTACTAC
CCAACTGGAAGTTTGTGGGGAGCTTTTGTTAGCTTCTGGACCAAACCGTT
ATGTTAGACCGTATTTTTCCAAGAGAGAAACGGTTGTATTTAGCTCTGAA
AAACAGCAAATTCTTTTTTGTTTGACGCAATGTGACGGATCCCTGATGTT
CATTCAGTACGATTTGCAGAGTCAACGGTGGAAGGTATGTAGAGCGGACG
TCGTTCTTGAGAAGGTGAAAATGCTTGTAAAACACGCCGCGTGCGTCAGG
GAGGATGAGATATTGATACTTGGAGAAATAGCGGACAAAGCTGGCGAAAT
CAACCAACCACGTGCATGTTTAGCTTTCTACCACAGAGTTTCGCAAATTG
AGCTCTTCAATGGGCGCGACGATAGCTTTAGAGGCGGGGATTTGGACCTG
ACCTCAGTTTCTGTATCAAAGAAGTTGCAAACCCGAGAGTCGTCCATGTT
GCATGTCGGACAACCACTATCGGAATTAGAAGCAGCATTGAGCGCGGTGA
ATGACAACAGGTTTGCAAGGTAAGGCAAGGGGTTTTCTCTTCATCTCGAG
GGCACGTGATTCAGACGAACTGACTTTTGAAGTATTTGGGAACATCTCTT
GTCATGCGACGAAAGCATATTGATCAAGCCGAACAAAGTCTCTATTGTTG
GTTTTGAGCACGATGCGTTCTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:1108646..1110868-

>Gchil8288.t1 ID=Gchil8288.t1|Name=Gchil8288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2127bp|location=Sequence derived from alignment at tig00004384_pilon:1108646..1110868- (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTCGAAGGACATCAGACTGCACCTGCACCTGCTGTCTTATACGA
ACGGTCCTTCTCAGCTGCCGTTTCCGATGTAAAAATTTGTCCCAATGCCC
GCTTGTTCGCAGTTGTTCTGGATCGCGTGTCCATCGCGATCTTCAGAATT
AATTGTCATCGACTGGCAACTATCTCTGTGTGCACCAAGGAGCAAGAGAC
AATAACGTCGTACAATTGGTCCCCGGATGGAGCCAACATTGTAGTGGCTT
CATCCAGTGCAAATCTTTCGATTTATTCCATAGACCGATGCTCTTTGTCT
GCATCAAGGACAAGGCGATCATTGAGAGACTCCGATATCGTGGCCACCGT
AACTTTGCCGGCCAGTGCCTCTTGTCTTGCATGGTCCTCTATTTCTGGCG
CACCGCCCGAAATCCAACGCCGGTTTGATTATGCTGCAGGATACCAAGAT
CGCGCTTCTGTTTTTTATGACAACAGTTTGACGTTGAGTCATGTTGCACC
TGGGGGACTCTTGCTTGTTGGAGACGAAGAAGGTTGCCTCACATTGTACA
CGCACGATCTGCAACTCAAAATTGCGCGAGTCCAAATACTGCCAAAAGAT
GTAGCCGTGCACCGCGTCCTGATGAGCCCCAATCATTCTTACGCCCTTTC
TCTTGCATACCAGTCATCCTGTAATGAAGAGGGTGATTCAGGAGCAAGTC
GATGCTTTATACGAGTTTTAAACCTACAACCCGTTTCTGAGTACTGGCCC
GAGATATATCGAGTTAATATGGAGAGTGTGAGCACCAATGTCATTAAGCA
GAGTTTTTCAGACGCAATTGCCCGACTTCAAAAAGAATGGAAAGAAGGTG
CGATGAACGTGCTCACTGCAAGAATTCAGAAATCGATAGAAAAGCGGATG
AAAGATTTTGCCGAAGACGTGAAGAAGAGAAACGCTTGGGGTGCTCTTCA
TGATACGTATTGCGGTGCTTTCATGAAGTCTGCATTACTGCAGTTCCTCG
GAACTGATCTCAGCGAAAGTGGGGCTAAAGAGGCGCTCCGTTCATTTCGT
GCGCATGCTGACGATGTCGAAGAAACCATTGTAAAAACGCTGCCAATTGC
CGAGAAAATGATGTTTCGGGCCTCTGAGTACCGAGGACTAGCTCGAATGA
AATGGAGATTCGCGCCCGTGGGTGTTTTGTTGGACGAGGCCAACGAAATG
TTTGAAGCGTCAGAAGCCTTCTATTTGGCATTACAAGAACTGATGTATGA
AAGCCAAAAGATGTCGCGGGAAGCTGAAGCATTCTTAGCATGGCTTGTAA
TAGCAGCTGCTAAAGCCGGTGGAGCATCTGTCGAGAGAAGAGACCAAGCA
GTGACTCTGGATAATATGAGCACCAAGGATAGACAGCTTGTGTCGGATTT
CTTAGAGAGAATGAGTGGAGATATTGGAAACAAGCCGAAATTGGGGGACT
CTGTGTCTGACCTTCTTAATTCTCGATTAGCCAGGGCTTATCAGAAGTTT
GAAGAGGTTGTCCAATCGGTTTTTCAAACGCCCGCTAGAGAGATTACTAC
CCAACTGGAAGTTTGTGGGGAGCTTTTGTTAGCTTCTGGACCAAACCGTT
ATGTTAGACCGTATTTTTCCAAGAGAGAAACGGTTGTATTTAGCTCTGAA
AAACAGCAAATTCTTTTTTGTTTGACGCAATGTGACGGATCCCTGATGTT
CATTCAGTACGATTTGCAGAGTCAACGGTGGAAGGTATGTAGAGCGGACG
TCGTTCTTGAGAAGGTGAAAATGCTTGTAAAACACGCCGCGTGCGTCAGG
GAGGATGAGATATTGATACTTGGAGAAATAGCGGACAAAGCTGGCGAAAT
CAACCAACCACGTGCATGTTTAGCTTTCTACCACAGAGTTTCGCAAATTG
AGCTCTTCAATGGGCGCGACGATAGCTTTAGAGGCGGGGATTTGGACCTG
ACCTCAGTTTCTGTATCAAAGAAGTTGCAAACCCGAGAGTCGTCCATGTT
GCATGTCGGACAACCACTATCGGAATTAGAAGCAGCATTGAGCGCGGTGA
ATGACAACAGGTTTGCAAGCATATTGATCAAGCCGAACAAAGTCTCTATT
GTTGGTTTTGAGCACGATGCGTTCTAG
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