Gchil8288.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8288.t1
Unique NameGchil8288.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length709
Homology
BLAST of Gchil8288.t1 vs. uniprot
Match: A0A2V3IRT0_9FLOR (Anaphase-promoting complex subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRT0_9FLOR)

HSP 1 Score: 534 bits (1375), Expect = 3.560e-178
Identity = 314/714 (43.98%), Postives = 449/714 (62.89%), Query Frame = 0
Query:    7 QTAPAPAVLYERSFSAAVSDVKICPNARLFAVVLDRVSIAIFRINCHRLATISVCTKEQETITSYNWSPDGANIVVASSSANLSIYSIDRCSLSASRTRRSLRDSDIVATVTLPASASCLAWSSISGAPPEIQRRFDYAAGYQDRASVFYDNSLTLSHVAPGGLLLVGDEEGCLTLYTHDLQLKIARVQILPKDVAVHRVLMSPNHSYALSLAYQSSCNEEGDSGASRCFIRVLNLQPVSEYWPEIYRVNMESVSTNVIKQSFSDAIARLQKEWKEGAMNVLTARIQKSIEKRMKDFAEDVKKRNAWGALHDTYCGAFMKSALLQFLGTDLSESGAKEALRSFRAHADDVEETIVKTLPIAEKMMFRASEYRGLARMKWRFAPVGVLLDEANEMFEASEAFYLALQELMYESQKMSREAEAFLAWLVIAAAKAGGASVERRDQAVTLDNMSTKDRQLVSDFLERMS-GDIGNKPKLGDSVSDLLNSRLARAYQKFEEVVQSVFQTPAREITTQLEV-----CGELLLASGPNRYVRPYFSKRETVVFSSEKQQILFCLTQCDGSLMFIQYDLQSQRWKVCRADVVLEKVKMLVKHAACVREDEILILGEIADKAGEINQPRACLAFYHRVSQIELFNGRDDSFRGGDLDLTSVSVSKKLQT----RESSMLHV----GQPLSELEAALSAVNDNRFASILIKPNKVSIVGFEHD 706
            + A +  +L++RSFSAAVS+V +CPN  LFA VLDR+SIAIFR NC RLATIS CTK++E+IT+Y WSPDGANI +ASSS  LSIYS+D+CS + S+T+R  RDSD VA+VTLP  AS L W+         + R D A  YQDRA+ F  +SL  +++   GLL+ GDE G +T+YTH+LQL++A VQ L + V V  + MS  H +AL++ Y+     E +S ASRC +R++NL+ V  + PEI R+N E  + N + Q+ S  + R++KEW +GAM +L+A IQK IEK M+DFAED   ++AW +L+D YCGA MK+ +LQ LGTDLSESGAKEALRSFRAHADDVEE ++ TLPIAE+M FRASEYRGLAR+K RF  VGV L E NE+FEA++    A+++LM ES++M  EAEAFL W+VIAAAKAGG ++E  D+   L  MS KD++LVS FL+RMS G+       GD VS ++ + +   +++FE+ VQ+VF+ PA+ I++ + +      G   L    ++ ++  +S+       +  + ++ C+ + DG L+F +Y  +   WK+ +  +      + V  +  V  ++ +I+ E     G       C     R  + +   G  + F  G  ++  +S  + +       ES +L      G  LS     + A  + RF  +L+K N++ IVG   D
Sbjct:    5 RNASSLVLLHDRSFSAAVSNVTVCPNMDLFAAVLDRISIAIFRKNCQRLATISACTKQKESITAYTWSPDGANIALASSSGALSIYSVDQCSSAVSKTKRGSRDSDAVASVTLPTPASTLLWADTQAQSMPERDRSDSAHEYQDRAAEFESDSLEEANIPCKGLLIAGDENGAITIYTHNLQLRVAHVQALCEKVPVRGIHMSSIHPHALAIGYEKCDTPEQNSTASRCVMRIVNLESVFAHLPEIDRINREVKAANNVIQTLSTTMKRIRKEWVQGAMAILSASIQKPIEKLMRDFAEDEYHQDAWSSLYDVYCGAKMKNGMLQHLGTDLSESGAKEALRSFRAHADDVEEAVMATLPIAEQMTFRASEYRGLARVKGRFERVGVRLKEGNELFEAAQKLCGAVEQLMDESERMCSEAEAFLGWVVIAAAKAGGMAIETADET-KLHKMSEKDKELVSGFLKRMSEGE-------GDVVSGVIANEVEDGFRRFEKCVQAVFEVPAKAISSAVSMEAGIWFGVSELGWSSDKVLQWCWSE------GACNEYLVVCMRESDGELVFARYGREKNGWKIMKRRLTRGDKVVQVWGSGYVSGEKFVIVSE---GEGSGRDRMECFMLRGRDVEGKALEGEGEEFEEGSCEMQGLSECRAVDVGVDGAESWLLGQFEGGGGRLS-----VGADRNGRFVCLLMKRNRILIVGARGD 696          
The following BLAST results are available for this feature:
BLAST of Gchil8288.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRT0_9FLOR3.560e-17843.98Anaphase-promoting complex subunit 4 n=1 Tax=Graci... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024790Anaphase-promoting complex subunit 4 long domainPFAMPF12896ANAPC4coord: 262..434
e-value: 8.6E-13
score: 48.3
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 28..129
e-value: 1.2E-8
score: 35.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..224
e-value: 2.1E-9
score: 38.7
IPR024789Anaphase-promoting complex subunit 4PANTHERPTHR13260ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4coord: 13..569
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 17..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1108646..1110868 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8288.t1Gchil8288.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 1108646..1110868 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8288.t1 ID=Gchil8288.t1|Name=Gchil8288.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=709bp
MEFEGHQTAPAPAVLYERSFSAAVSDVKICPNARLFAVVLDRVSIAIFRI
NCHRLATISVCTKEQETITSYNWSPDGANIVVASSSANLSIYSIDRCSLS
ASRTRRSLRDSDIVATVTLPASASCLAWSSISGAPPEIQRRFDYAAGYQD
RASVFYDNSLTLSHVAPGGLLLVGDEEGCLTLYTHDLQLKIARVQILPKD
VAVHRVLMSPNHSYALSLAYQSSCNEEGDSGASRCFIRVLNLQPVSEYWP
EIYRVNMESVSTNVIKQSFSDAIARLQKEWKEGAMNVLTARIQKSIEKRM
KDFAEDVKKRNAWGALHDTYCGAFMKSALLQFLGTDLSESGAKEALRSFR
AHADDVEETIVKTLPIAEKMMFRASEYRGLARMKWRFAPVGVLLDEANEM
FEASEAFYLALQELMYESQKMSREAEAFLAWLVIAAAKAGGASVERRDQA
VTLDNMSTKDRQLVSDFLERMSGDIGNKPKLGDSVSDLLNSRLARAYQKF
EEVVQSVFQTPAREITTQLEVCGELLLASGPNRYVRPYFSKRETVVFSSE
KQQILFCLTQCDGSLMFIQYDLQSQRWKVCRADVVLEKVKMLVKHAACVR
EDEILILGEIADKAGEINQPRACLAFYHRVSQIELFNGRDDSFRGGDLDL
TSVSVSKKLQTRESSMLHVGQPLSELEAALSAVNDNRFASILIKPNKVSI
VGFEHDAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024790APC4_long_dom
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR024789APC4
IPR036322WD40_repeat_dom_sf