Gchil8136.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8136.t1
Unique NameGchil8136.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length418
Homology
BLAST of Gchil8136.t1 vs. uniprot
Match: A0A2V3IM82_9FLOR (Ribosome biogenesis protein WDR12-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM82_9FLOR)

HSP 1 Score: 283 bits (724), Expect = 4.300e-91
Identity = 140/220 (63.64%), Postives = 176/220 (80.00%), Query Frame = 0
Query:  194 MNSRETKAASFSAASVKHNTNMVALGCADGSIWLTQDCLDGVTEPSEAKKRKSVASMGASRVTDGDLCVSGLVWREKEIVSVGWDGFTHVFCAETCTKKTTIPSGGKALTSVAAVQDADWLVVSAVDGAVRLIDGRLGKGVVGACGKRGAHRGIVTDLSAGEMVVVSSGVDGCVKFWDRRSLLSPQQTVRSEGKLFAVDMVKGEGGKARVFAGGQRGHVL 413
            M++ ETK ASFSAASVK  ++  ALGC DGS+WL QDCL    +    +KRK+V+++ ASRVTDG L V+GL+WR  +IVSVGWDGFT VFCA+TCTKKTTIPSGGK LTSV ++  +   +VSAVDGAVR++DGR GKGVV ACGKR AH+GIVTD++A E +VVS+G+DG VKFWD+RSLL+PQ T+R++GKLFAVD+++G   +  VFA GQ G VL
Sbjct:    1 MDTSETKPASFSAASVKSGSSTAALGCMDGSLWLAQDCLGNTNDAHGDRKRKAVSNIPASRVTDGVLRVTGLLWRANDIVSVGWDGFTSVFCADTCTKKTTIPSGGKPLTSVVSLDGSGCFIVSAVDGAVRMVDGRSGKGVVAACGKREAHQGIVTDVAAQEELVVSTGMDGTVKFWDQRSLLTPQHTIRTDGKLFAVDLIRGT--RNTVFAAGQTGKVL 218          
BLAST of Gchil8136.t1 vs. uniprot
Match: A0A2V3IM57_9FLOR (Ribosome biogenesis protein WDR12-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM57_9FLOR)

HSP 1 Score: 256 bits (653), Expect = 5.900e-81
Identity = 122/180 (67.78%), Postives = 150/180 (83.33%), Query Frame = 0
Query:    1 MVAPTATTSSRALQVRFKSGVEQEHYKGAHNAMLQVPAHFGRNSLRTVVHTLLNLAEEDKPNFHFLVDETPLRTTLDKFLERRSLSFEVTLTLTYYLPIPEPDPKGDIGISENWISSLHADANCRVLAGLFSGRVSILQGDEVILDERNFSEPHQGPVKDVQWINEDHFLTASSDETACV 180
            MV P A +SS+ +Q+RFK G+E + YK AHNA+LQVPAH GR SL+T++HTLLNL+EED+P+FHFLVDE PLRTTLDKF+ERR+LSFE TL+LTY+LPI EP+ + D  IS+NWISSLHA  + RVLAGLFSGR SI+  D+VIL E +F   H+ PVK VQW+N++HFLTASSDETACV
Sbjct:    1 MVGPIAPSSSKTIQIRFKCGIENQTYKSAHNAVLQVPAHLGRKSLKTLLHTLLNLSEEDRPDFHFLVDEVPLRTTLDKFIERRNLSFENTLSLTYFLPIAEPNREPDTSISQNWISSLHAHKDGRVLAGLFSGRSSIVHDDKVILAESSFPHSHEAPVKAVQWLNDNHFLTASSDETACV 180          
BLAST of Gchil8136.t1 vs. uniprot
Match: R7QIE4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIE4_CHOCR)

HSP 1 Score: 80.9 bits (198), Expect = 4.060e-15
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 0
Query:  314 LVVSAVDGAVRLIDGRLGKGVVGACGKRGAHRGIVTD---LSAGEMVVVSSGVDGCVKFWDRRSLLSP---QQTVRSEGKLFAVDMVKGEGGKARVFAGGQRGHV 412
            ++VSAVDG VRL+D R GKGVV ACG++GAHRG+VTD   + AG+  V S G DG V+ WD R+L++P    + V   GK  AV     E     VF+ G  G V
Sbjct:    1 MLVSAVDGGVRLVDAREGKGVVAACGRKGAHRGVVTDACWMVAGKSAV-SGGGDGSVRLWDVRALMTPAHIMERVHEGGKSLAVAAAGEE-----VFSAGADGKV 99          
BLAST of Gchil8136.t1 vs. uniprot
Match: A0A1X6PI17_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PI17_PORUM)

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-11
Identity = 84/324 (25.93%), Postives = 120/324 (37.04%), Query Frame = 0
Query:  154 HQGPVKDVQWINE----DHFLTASSDETACVWRFSGGDA--------------RMVCRMNSRETKAASFSAASVKHNTNMVALGC----ADGSIW--------LTQDCLDG---------VTEPSEAKKR--KSVASMGASRVTDGD--LCVSGLVWR-EKEIVSVGWDGFTHVFCAETCTKKTTIPSGGKALTSVAAVQDADW------------------LVVSAVDGAVRLIDGRLGKG--VVGACGKRGAHRGIVTDLSAGEMV-VVSSGVDGCVKFWDRRSLLSPQQTVRSEGKLFAVDMVKGEGGKARVFAGGQRGHV 412
            H  P+  V W+ +      F TA SDET  +W                     R V R +   T A  F                     +G +W        L +   DG            P   +KR   +V ++G  R+  G   L V+ + +    E+    WDG   ++  +    + T+P+GGKALT +A    +                    L V+A+DGAVRL+D R+  G  VVGA   R  H GI + +     V + + G DG V  WD RSL +P   +   G               R+FAGG  G V
Sbjct:   32 HGAPIAGVAWLPDLTGGGAFATAGSDETVRLWSAXXXXXXXXXXXXXXXXXALRGVFRSDEVATAATPFXXXXXXXXXXXXXXXXXXXGTNGDVWVVDARAARLDEAAPDGXXXXADAGAAAAPGRGRKRPPSTVPALGGRRLDGGPRHLPVAAVAFGGADELAGASWDGLVRLWAVDAGVVRVTLPAGGKALTGMALAPPSXXXXXXXXXXXXXXXXXVSVLAVTAIDGAVRLLDARVAAGAVVVGASPPRRGHAGIASAVVWTSAVGLATGGHDGAVAVWDVRSLAAPTDRLADAGXXXXXXXXX-----XRLFAGGSDGQV 350          
The following BLAST results are available for this feature:
BLAST of Gchil8136.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IM82_9FLOR4.300e-9163.64Ribosome biogenesis protein WDR12-like n=1 Tax=Gra... [more]
A0A2V3IM57_9FLOR5.900e-8167.78Ribosome biogenesis protein WDR12-like n=1 Tax=Gra... [more]
R7QIE4_CHOCR4.060e-1548.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PI17_PORUM1.900e-1125.93Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 143..182
e-value: 0.33
score: 20.0
coord: 288..327
e-value: 1.3
score: 16.2
coord: 331..371
e-value: 3.2
score: 13.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 241..417
e-value: 2.2E-12
score: 49.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 99..229
e-value: 2.2E-9
score: 39.0
IPR012972NLEPFAMPF08154NLEcoord: 13..80
e-value: 5.6E-10
score: 39.6
NoneNo IPR availablePANTHERPTHR19855WD40 REPEAT PROTEIN 12, 37coord: 126..383
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 153..387

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:114814..116067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8136.t1Gchil8136.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 114814..116067 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8136.t1 ID=Gchil8136.t1|Name=Gchil8136.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MVAPTATTSSRALQVRFKSGVEQEHYKGAHNAMLQVPAHFGRNSLRTVVH
TLLNLAEEDKPNFHFLVDETPLRTTLDKFLERRSLSFEVTLTLTYYLPIP
EPDPKGDIGISENWISSLHADANCRVLAGLFSGRVSILQGDEVILDERNF
SEPHQGPVKDVQWINEDHFLTASSDETACVWRFSGGDARMVCRMNSRETK
AASFSAASVKHNTNMVALGCADGSIWLTQDCLDGVTEPSEAKKRKSVASM
GASRVTDGDLCVSGLVWREKEIVSVGWDGFTHVFCAETCTKKTTIPSGGK
ALTSVAAVQDADWLVVSAVDGAVRLIDGRLGKGVVGACGKRGAHRGIVTD
LSAGEMVVVSSGVDGCVKFWDRRSLLSPQQTVRSEGKLFAVDMVKGEGGK
ARVFAGGQRGHVLGVDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR012972NLE
IPR036322WD40_repeat_dom_sf