Gchil8208.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8208.t1
Unique NameGchil8208.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:689694..690290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926560.KE387027_gene334
PFAMsDHFR_1
Max annot lvl1297|Deinococcus-Thermus
KEGG rclassRC00109,RC00110,RC00158
KEGG koko:K00287
KEGG ReactionR00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathwayko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG ModuleM00126,M00840
Evalue1.81e-23
EggNOG OGsCOG0262@1|root,COG0262@2|Bacteria,1WMN7@1297|Deinococcus-Thermus
EC1.5.1.3
DescriptionKey enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8208Gchil8208Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 689694..690290 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8208.t1.start1Gchil8208.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 689694..689696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8208.t1.CDS1Gchil8208.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 689694..690290 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8208.t1.exon1Gchil8208.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 689694..690290 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8208.t1.stop1Gchil8208.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 690288..690290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8208.t1Gchil8208.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 689694..690290 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8208.t1 ID=Gchil8208.t1|Name=Gchil8208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=199bp
MSIISAVVAYCRVNRVIGNRNSLPWPHLSNDMHRFSRLTTNHAIIMGRQT
FLSDELNGQPLPHRRTIVLSTSTTWVPPPGVLHASDWHEALLLAHSGFGA
AGYTNGAHTVAIPTAPRHVFVVGGESVYKLALRNGCQWVFATEIEGHMQG
DTFFPQLPQHQWYRVHPDDCPKHWASPTPVHEHGISYSFVTYRKRLPI*
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spliced messenger RNA

>Gchil8208.t1 ID=Gchil8208.t1|Name=Gchil8208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00004384_pilon:689694..690290+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCATATCCGCCGTCGTCGCCTACTGTCGTGTCAATCGAGTTAT
TGGAAACCGTAATTCTTTGCCCTGGCCACATCTTTCCAACGACATGCACC
GCTTTTCCAGGCTCACCACCAACCATGCCATCATAATGGGTCGTCAAACA
TTCCTCTCCGACGAGTTGAATGGACAGCCCTTGCCGCACCGACGTACCAT
AGTCTTGTCCACGAGCACCACGTGGGTTCCTCCACCCGGTGTTCTGCACG
CATCCGATTGGCATGAAGCCCTGTTGCTGGCTCACTCTGGCTTCGGTGCC
GCCGGATACACCAACGGCGCCCATACCGTCGCAATTCCCACCGCCCCACG
CCATGTGTTTGTCGTGGGCGGCGAATCTGTCTACAAACTCGCCCTGCGCA
ACGGCTGCCAATGGGTGTTTGCCACTGAGATTGAGGGCCACATGCAAGGC
GACACATTCTTTCCACAATTACCGCAACACCAGTGGTATCGAGTACACCC
CGACGACTGCCCCAAGCACTGGGCTTCTCCAACCCCTGTCCATGAGCACG
GCATCTCTTATTCCTTTGTCACCTACAGAAAACGACTCCCGATATGA
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protein sequence of Gchil8208.t1

>Gchil8208.t1 ID=Gchil8208.t1|Name=Gchil8208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=199bp
MSIISAVVAYCRVNRVIGNRNSLPWPHLSNDMHRFSRLTTNHAIIMGRQT
FLSDELNGQPLPHRRTIVLSTSTTWVPPPGVLHASDWHEALLLAHSGFGA
AGYTNGAHTVAIPTAPRHVFVVGGESVYKLALRNGCQWVFATEIEGHMQG
DTFFPQLPQHQWYRVHPDDCPKHWASPTPVHEHGISYSFVTYRKRLPI*
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mRNA from alignment at tig00004384_pilon:689694..690290+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8208.t1 ID=Gchil8208.t1|Name=Gchil8208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00004384_pilon:689694..690290+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCATCATATCCGCCGTCGTCGCCTACTGTCGTGTCAATCGAGTTAT
TGGAAACCGTAATTCTTTGCCCTGGCCACATCTTTCCAACGACATGCACC
GCTTTTCCAGGCTCACCACCAACCATGCCATCATAATGGGTCGTCAAACA
TTCCTCTCCGACGAGTTGAATGGACAGCCCTTGCCGCACCGACGTACCAT
AGTCTTGTCCACGAGCACCACGTGGGTTCCTCCACCCGGTGTTCTGCACG
CATCCGATTGGCATGAAGCCCTGTTGCTGGCTCACTCTGGCTTCGGTGCC
GCCGGATACACCAACGGCGCCCATACCGTCGCAATTCCCACCGCCCCACG
CCATGTGTTTGTCGTGGGCGGCGAATCTGTCTACAAACTCGCCCTGCGCA
ACGGCTGCCAATGGGTGTTTGCCACTGAGATTGAGGGCCACATGCAAGGC
GACACATTCTTTCCACAATTACCGCAACACCAGTGGTATCGAGTACACCC
CGACGACTGCCCCAAGCACTGGGCTTCTCCAACCCCTGTCCATGAGCACG
GCATCTCTTATTCCTTTGTCACCTACAGAAAACGACTCCCGATATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:689694..690290+

>Gchil8208.t1 ID=Gchil8208.t1|Name=Gchil8208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00004384_pilon:689694..690290+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCATCATATCCGCCGTCGTCGCCTACTGTCGTGTCAATCGAGTTAT
TGGAAACCGTAATTCTTTGCCCTGGCCACATCTTTCCAACGACATGCACC
GCTTTTCCAGGCTCACCACCAACCATGCCATCATAATGGGTCGTCAAACA
TTCCTCTCCGACGAGTTGAATGGACAGCCCTTGCCGCACCGACGTACCAT
AGTCTTGTCCACGAGCACCACGTGGGTTCCTCCACCCGGTGTTCTGCACG
CATCCGATTGGCATGAAGCCCTGTTGCTGGCTCACTCTGGCTTCGGTGCC
GCCGGATACACCAACGGCGCCCATACCGTCGCAATTCCCACCGCCCCACG
CCATGTGTTTGTCGTGGGCGGCGAATCTGTCTACAAACTCGCCCTGCGCA
ACGGCTGCCAATGGGTGTTTGCCACTGAGATTGAGGGCCACATGCAAGGC
GACACATTCTTTCCACAATTACCGCAACACCAGTGGTATCGAGTACACCC
CGACGACTGCCCCAAGCACTGGGCTTCTCCAACCCCTGTCCATGAGCACG
GCATCTCTTATTCCTTTGTCACCTACAGAAAACGACTCCCGATATGA
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