Gchil8263.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8263.t1
Unique Name	Gchil8263.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:963048..964199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AES69543
PFAMs	DAP3
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K17408
Evalue	2.9e-08
EggNOG OGs	KOG3928@1\|root,KOG3928@2759\|Eukaryota,37IPH@33090\|Viridiplantae,3GE0J@35493\|Streptophyta,4JG7T@91835\|fabids
Description	28S ribosomal protein S29
COG category	J
BRITE	br01610,ko00000,ko03011,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8263	Gchil8263	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 963048..964199 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8263.t1.start1	Gchil8263.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 963048..963050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8263.t1.CDS1	Gchil8263.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 963048..964199 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8263.t1.exon1	Gchil8263.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 963048..964199 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8263.t1.stop1	Gchil8263.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 964197..964199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8263.t1	Gchil8263.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 963048..964199 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:963048..964199+
coding sequence from alignment at tig00004384_pilon:963048..964199+

mRNA sequence

>Gchil8263.t1 ID=Gchil8263.t1|Name=Gchil8263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp
MIRGATWNRSNYLYPVTKRSFALATPASDRTLSLEPLESAASSSLTKTLI
RPTSQLMREILSSEKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLH
IPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLG
AHAQVLNELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIE
AGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLRLHANSIR
VVAQHLGRDSIENTARTLPNGYVLLASDTNAAIENWRKSRVRSTIDFPLS
EDVSNDPSGRSWWKSFRHRVQQAPKQESLYIPVPELTSGELKALCATFEQ
GGLKREQGRAFTDRLTALAGGRADQMRKLFFGR*

spliced messenger RNA

>Gchil8263.t1 ID=Gchil8263.t1|Name=Gchil8263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00004384_pilon:963048..964199+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAGAGGAGCAACGTGGAATCGATCAAATTATCTCTATCCAGTCAC
AAAACGTTCTTTTGCATTGGCAACCCCAGCATCTGACCGCACTTTATCTT
TGGAGCCTCTTGAATCCGCAGCGAGTTCTTCTCTTACGAAGACATTGATT
CGTCCCACTTCTCAGTTGATGCGCGAGATTTTGTCCTCAGAAAAAAAGCC
GTCTCTGATGTTTCTGGATGGACCCAAGGGAGTGGGTAAGTCAGCGCTTT
TATCACAAGCCGTCAAATTTGCTCGCGAGCACAACCATATCGTGCTTCAT
ATTCCTTCCGCACAAGATTGGACTAATGGAGACGGGTTTTTCACGGCAAA
ATCATTGGATAACATGGACTCTCACATAGACGGTCTGGCAGTCATTCGAT
TTTACGAAAGACCTTTCCAAACTCGAAGATTATTCGAAGACTTGCTCGGT
GCACACGCTCAAGTGCTGAACGAATTGCCTTGCCATGAAGATCTTTCCAC
TCCGCTAACGAAGCAATGCAAATCATTGCGAGAGCTCGTTCAATTCGGAC
TGGATTTGCTAATCAATATCGATGCAGATTGGATAAATCACCCAATAGAG
GCTGGCGACGTCTTACATCAGCTTCTGAAAGAGCTGGCCCGAATTACCGA
TCACACAGTGGGCATAGTCATTGATGATTACCATGCTCTCGTGGGTCTTA
CATGCATGATTAATGAGCACAAGCTTCGCCTTCACGCGAATAGCATTCGT
GTCGTCGCTCAACATTTGGGTCGCGATAGTATTGAAAACACAGCGAGAAC
TCTTCCAAACGGTTATGTCCTATTGGCTTCTGACACAAACGCTGCCATAG
AGAACTGGCGCAAATCGCGAGTCCGGTCGACGATCGATTTTCCACTTAGC
GAGGACGTTAGCAATGACCCCAGCGGAAGATCCTGGTGGAAGTCATTTAG
ACATCGTGTTCAGCAAGCGCCGAAACAAGAGTCTTTGTACATTCCAGTTC
CGGAACTAACAAGTGGCGAATTGAAGGCTCTGTGCGCAACATTCGAGCAA
GGAGGTTTAAAACGAGAGCAGGGCAGAGCGTTCACTGATAGGCTCACAGC
CCTTGCTGGAGGCCGAGCTGATCAAATGCGTAAACTTTTCTTTGGCCGCT
GA

protein sequence of Gchil8263.t1

>Gchil8263.t1 ID=Gchil8263.t1|Name=Gchil8263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=384bp
MIRGATWNRSNYLYPVTKRSFALATPASDRTLSLEPLESAASSSLTKTLI
RPTSQLMREILSSEKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLH
IPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLG
AHAQVLNELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIE
AGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLRLHANSIR
VVAQHLGRDSIENTARTLPNGYVLLASDTNAAIENWRKSRVRSTIDFPLS
EDVSNDPSGRSWWKSFRHRVQQAPKQESLYIPVPELTSGELKALCATFEQ
GGLKREQGRAFTDRLTALAGGRADQMRKLFFGR*

mRNA from alignment at tig00004384_pilon:963048..964199+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8263.t1 ID=Gchil8263.t1|Name=Gchil8263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00004384_pilon:963048..964199+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAAGAGGAGCAACGTGGAATCGATCAAATTATCTCTATCCAGTCAC
AAAACGTTCTTTTGCATTGGCAACCCCAGCATCTGACCGCACTTTATCTT
TGGAGCCTCTTGAATCCGCAGCGAGTTCTTCTCTTACGAAGACATTGATT
CGTCCCACTTCTCAGTTGATGCGCGAGATTTTGTCCTCAGAAAAAAAGCC
GTCTCTGATGTTTCTGGATGGACCCAAGGGAGTGGGTAAGTCAGCGCTTT
TATCACAAGCCGTCAAATTTGCTCGCGAGCACAACCATATCGTGCTTCAT
ATTCCTTCCGCACAAGATTGGACTAATGGAGACGGGTTTTTCACGGCAAA
ATCATTGGATAACATGGACTCTCACATAGACGGTCTGGCAGTCATTCGAT
TTTACGAAAGACCTTTCCAAACTCGAAGATTATTCGAAGACTTGCTCGGT
GCACACGCTCAAGTGCTGAACGAATTGCCTTGCCATGAAGATCTTTCCAC
TCCGCTAACGAAGCAATGCAAATCATTGCGAGAGCTCGTTCAATTCGGAC
TGGATTTGCTAATCAATATCGATGCAGATTGGATAAATCACCCAATAGAG
GCTGGCGACGTCTTACATCAGCTTCTGAAAGAGCTGGCCCGAATTACCGA
TCACACAGTGGGCATAGTCATTGATGATTACCATGCTCTCGTGGGTCTTA
CATGCATGATTAATGAGCACAAGCTTCGCCTTCACGCGAATAGCATTCGT
GTCGTCGCTCAACATTTGGGTCGCGATAGTATTGAAAACACAGCGAGAAC
TCTTCCAAACGGTTATGTCCTATTGGCTTCTGACACAAACGCTGCCATAG
AGAACTGGCGCAAATCGCGAGTCCGGTCGACGATCGATTTTCCACTTAGC
GAGGACGTTAGCAATGACCCCAGCGGAAGATCCTGGTGGAAGTCATTTAG
ACATCGTGTTCAGCAAGCGCCGAAACAAGAGTCTTTGTACATTCCAGTTC
CGGAACTAACAAGTGGCGAATTGAAGGCTCTGTGCGCAACATTCGAGCAA
GGAGGTTTAAAACGAGAGCAGGGCAGAGCGTTCACTGATAGGCTCACAGC
CCTTGCTGGAGGCCGAGCTGATCAAATGCGTAAACTTTTCTTTGGCCGCT
GA

Coding sequence (CDS) from alignment at tig00004384_pilon:963048..964199+

>Gchil8263.t1 ID=Gchil8263.t1|Name=Gchil8263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00004384_pilon:963048..964199+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAAGAGGAGCAACGTGGAATCGATCAAATTATCTCTATCCAGTCAC
AAAACGTTCTTTTGCATTGGCAACCCCAGCATCTGACCGCACTTTATCTT
TGGAGCCTCTTGAATCCGCAGCGAGTTCTTCTCTTACGAAGACATTGATT
CGTCCCACTTCTCAGTTGATGCGCGAGATTTTGTCCTCAGAAAAAAAGCC
GTCTCTGATGTTTCTGGATGGACCCAAGGGAGTGGGTAAGTCAGCGCTTT
TATCACAAGCCGTCAAATTTGCTCGCGAGCACAACCATATCGTGCTTCAT
ATTCCTTCCGCACAAGATTGGACTAATGGAGACGGGTTTTTCACGGCAAA
ATCATTGGATAACATGGACTCTCACATAGACGGTCTGGCAGTCATTCGAT
TTTACGAAAGACCTTTCCAAACTCGAAGATTATTCGAAGACTTGCTCGGT
GCACACGCTCAAGTGCTGAACGAATTGCCTTGCCATGAAGATCTTTCCAC
TCCGCTAACGAAGCAATGCAAATCATTGCGAGAGCTCGTTCAATTCGGAC
TGGATTTGCTAATCAATATCGATGCAGATTGGATAAATCACCCAATAGAG
GCTGGCGACGTCTTACATCAGCTTCTGAAAGAGCTGGCCCGAATTACCGA
TCACACAGTGGGCATAGTCATTGATGATTACCATGCTCTCGTGGGTCTTA
CATGCATGATTAATGAGCACAAGCTTCGCCTTCACGCGAATAGCATTCGT
GTCGTCGCTCAACATTTGGGTCGCGATAGTATTGAAAACACAGCGAGAAC
TCTTCCAAACGGTTATGTCCTATTGGCTTCTGACACAAACGCTGCCATAG
AGAACTGGCGCAAATCGCGAGTCCGGTCGACGATCGATTTTCCACTTAGC
GAGGACGTTAGCAATGACCCCAGCGGAAGATCCTGGTGGAAGTCATTTAG
ACATCGTGTTCAGCAAGCGCCGAAACAAGAGTCTTTGTACATTCCAGTTC
CGGAACTAACAAGTGGCGAATTGAAGGCTCTGTGCGCAACATTCGAGCAA
GGAGGTTTAAAACGAGAGCAGGGCAGAGCGTTCACTGATAGGCTCACAGC
CCTTGCTGGAGGCCGAGCTGATCAAATGCGTAAACTTTTCTTTGGCCGCT
GA