Gchil8263.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8263.t1
Unique NameGchil8263.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length384
Homology
BLAST of Gchil8263.t1 vs. uniprot
Match: A0A2V3ISW0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISW0_9FLOR)

HSP 1 Score: 509 bits (1311), Expect = 2.900e-178
Identity = 238/372 (63.98%), Postives = 303/372 (81.45%), Query Frame = 0
Query:   12 YLYPVTKRSFALATPASDRTLSLEPLESAASSSLTKTLIRPTSQLMREILSSEKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLHIPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLGAHAQVLNELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIEAGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLRLHANSIRVVAQHLGRDSIENTARTLPNGYVLLASDTNAAIENWRKSRVRSTIDFPLSEDVSNDPSGRSWWKSFRHRVQQAPKQESLYIPVPELTSGELKALCATFEQGGLKREQGRAFTDRLTALAGGRADQMRKLFFGR 383
            +LYP+ +RSFA+A+  + R +SLE +++ ++    KTLIR ++ ++RE+L+S+  PSL+ LDGPKGVGKS LLSQ+V FAR+H+H+VLHIPSA++WT G GFFTAK ++ M+ H+DGL  +RFY+RP QTR+LFEDLL AHA++L E+PCHE L TPLTK+CKSLRELVQ GLDLL++ID DW +HP EAGDVLHQL+ +LA  TD  VGI IDD+HA VGLTCM NE   RLHAN IRV+AQH GR+ IE TA+ L  GYV+LA+D++A +E WRKSRVRS +DFPL+E+V NDP+G+ WW  FR RV++A + +SLY+ VPEL  GELKALCATFEQGGLKR+ GRA+TDRL ALAGGRAD+MRK+F  R
Sbjct:    9 HLYPIGRRSFAIASAETQRPISLETIDAQSAEGKAKTLIRSSTHVLREVLTSDNIPSLILLDGPKGVGKSTLLSQSVAFARKHHHVVLHIPSAREWTGGAGFFTAKPVEGMEPHLDGLEAVRFYDRPSQTRKLFEDLLNAHAEILEEMPCHEKLCTPLTKECKSLRELVQLGLDLLVDIDTDWGSHPTEAGDVLHQLILQLAH-TDRPVGIAIDDFHAFVGLTCMTNERHHRLHANCIRVIAQHFGRERIEATAKALRKGYVMLATDSDAPMETWRKSRVRSVVDFPLAEEVRNDPAGKQWWHDFRDRVRKADQSDSLYVQVPELQGGELKALCATFEQGGLKRDHGRAYTDRLIALAGGRADKMRKIFISR 379          
BLAST of Gchil8263.t1 vs. uniprot
Match: R7QE35_CHOCR (Uncharacterized protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QE35_CHOCR)

HSP 1 Score: 320 bits (820), Expect = 8.090e-103
Identity = 167/358 (46.65%), Postives = 229/358 (63.97%), Query Frame = 0
Query:   43 SSLTKTLIRPTSQLMREILSS--------------EKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLHIPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLGAHAQVLNELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIEAGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLRLHANSIRVVAQHLGRDSIENTARTLPNGYVLLASDTNAAIENWRKSRVRSTIDFPLSEDVSNDPSGRSWWKSFRHRVQQAPKQESLYIPVPELTSGELKALCATFEQGGLKR---EQGRAFTDRLTALAGGRADQMRKLFFGR 383
            S   KTL+R  + L+RE L +              E  P L+ LDG KGVGK++L+ Q   FAR    IVL+IP  + WT+G GFF AK++D MD  +DGL+ +R+Y+RP Q  ++F+DLL  H+  L ++ C    ST LT+ C SL +LV+ G  LL +ID++W   P  AG+V HQL+++L    D  V I+ID+Y   VG+TC++N+   R+H+N+IRVV +  GR +IE T++ + NG+V+LA D   A E +RKSRVRS +DFPLS +  +DPSG+ W  SFR RVQ +  + +LYI VP LTS ELKALC+TF QGGL++         T RL ALAGGR D MRK+   R
Sbjct:   96 SDFKKTLVRDATVLIREQLIAPYLPKTDEDAQGEREDAPQLVVLDGAKGVGKTSLVEQTAAFARLKGFIVLYIPYPESWTDGRGFFCAKAVDEMDPVMDGLSAVRYYDRPHQMHQVFKDLLQTHSGDLAQIVCDTQFSTSLTESCVSLLDLVELGDRLLSDIDSNWRQTPTSAGEVFHQLIRQLCACEDKPVAIIIDNYDKFVGMTCLVNDRLQRMHSNAIRVVGEDFGRYAIEKTSQEMRNGFVMLAVDPTHAFEPYRKSRVRSGLDFPLSNETLSDPSGKKWSASFRKRVQDSQTKRNLYIDVPRLTSSELKALCSTFVQGGLRKLIDGDQEEETARLVALAGGRGDLMRKIAVSR 453          
BLAST of Gchil8263.t1 vs. uniprot
Match: A0A8J6C5Q1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5Q1_DIALT)

HSP 1 Score: 69.7 bits (169), Expect = 2.480e-9
Identity = 63/232 (27.16%), Postives = 95/232 (40.95%), Query Frame = 0
Query:   41 ASSSLTKTLIRPTSQLMREIL-------SSEKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLHIPSAQDWTNGDGFFT------------AKSLDNMDSHIDGLAVIR-----FYERPFQTRRLFEDLLGAHAQVLNELPCH----EDLSTPLTKQCKSLRELVQFGLDL-LINIDADWINHPIEAGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLR 243
            A+++L   ++RP++   R  +       ++ +  S + L G +G GKSA LS  V  AR    +VLH+PSA  + NG   F             A   D+ D    GL          ++ P  T  L      AH   L ++       + LS  L  Q  +L +LVQ G        D +  +H + A      LL ELA +TD  V I +DD +     T   + H  +
Sbjct:  105 AATNLPALMVRPSALAARRAIDALAADAAALRSASALVLTGARGAGKSATLSYLVHAARSSGWLVLHLPSAHAYLNGQRRFAPLAASRVEISLVAAPADSADGAAAGLGASATELDALFDVPAATAALLRGFARAHETALAKIDTRTSQTQALSRALNSQLGTLADLVQLGTATDAAGADTELCSHALVA------LLAELAHVTDAPVMIAVDDANIFDRATAFRDPHTAK 330          
BLAST of Gchil8263.t1 vs. uniprot
Match: W6KWT3_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6KWT3_9TRYP)

HSP 1 Score: 63.5 bits (153), Expect = 2.530e-7
Identity = 67/259 (25.87%), Postives = 109/259 (42.08%), Query Frame = 0
Query:   58 REILS--SEKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLHIPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLGAHAQVL---------NELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIEAGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLRLHANSIRVVAQHLGRDSIENTARTLPNGYVLLASDTNAAIENWRKSRVRSTIDFPLSEDVSN 305
            R ++S  S  +P  + LDGP G GKSAL+ QAV FAR  N + L+IP+A+ WT+G+  + +  L              F++ P   R   +    ++  +L         ++LP  +  ++P     K+L +L ++G   +     D           +  LL EL+   + T+ IV+D ++         N H    H + +R +           T+ T  N  V +       I + R S VR    F LS D  N
Sbjct:  132 RSVISTLSNGRPGFI-LDGPTGCGKSALVCQAVHFARSRNILTLYIPNAKTWTHGEWCWPSVILPG------------FFDAPDAAREFLQYFAISNRNILENWSLKCTPSDLPIDQGETSP-----KTLLQLCEWGYQAVAPASID------RQSVCIKFLLDELSAEKEKTILIVVDGWNLFSH-----NTHFRYPHPDFLRTL-----------TSLTDKNTDVDMYPQELPRIPSSRLSFVRGLNKFILSSDEPN 350          
BLAST of Gchil8263.t1 vs. uniprot
Match: A0A0L1KZZ3_9EUGL (Uncharacterized protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KZZ3_9EUGL)

HSP 1 Score: 59.7 bits (143), Expect = 4.550e-6
Identity = 45/154 (29.22%), Postives = 73/154 (47.40%), Query Frame = 0
Query:   73 DGPKGVGKSALLSQAVKFAREHNHIVLHIPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLGAHAQVLNELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIEAGDV-LHQLLKELARITDHTVGIVID 225
            DGP GVGKSAL+ QAV +AR+   +VL++P A  W++G+  + +  L              F++ P   R++ +    A+A+ L+++P      TP     +     V+   DL +          IE   + +  L+ EL  ITD  V  V+D
Sbjct:  189 DGPTGVGKSALVCQAVHYARQREILVLYVPDASKWSHGEYAWPSVLLPG------------FFDVPDAARQMLQYFSKANAETLSKMPLRV---TPTNLPVERHENTVRTLYDLCLWGYKCHAPLSIERQSIAIKYLMDELREITDIPVLYVVD 327          
The following BLAST results are available for this feature:
BLAST of Gchil8263.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3ISW0_9FLOR2.900e-17863.98Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QE35_CHOCR8.090e-10346.65Uncharacterized protein n=3 Tax=Chondrus crispus T... [more]
A0A8J6C5Q1_DIALT2.480e-927.16Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
W6KWT3_9TRYP2.530e-725.87Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
A0A0L1KZZ3_9EUGL4.550e-629.22Uncharacterized protein n=1 Tax=Perkinsela sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019368Ribosomal protein S23/S29, mitochondrialPFAMPF10236DAP3coord: 52..378
e-value: 1.1E-20
score: 74.1
IPR019368Ribosomal protein S23/S29, mitochondrialPANTHERPTHR12810MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29coord: 49..379
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 59..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:963048..964199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8263.t1Gchil8263.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 963048..964199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8263.t1 ID=Gchil8263.t1|Name=Gchil8263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=384bp
MIRGATWNRSNYLYPVTKRSFALATPASDRTLSLEPLESAASSSLTKTLI
RPTSQLMREILSSEKKPSLMFLDGPKGVGKSALLSQAVKFAREHNHIVLH
IPSAQDWTNGDGFFTAKSLDNMDSHIDGLAVIRFYERPFQTRRLFEDLLG
AHAQVLNELPCHEDLSTPLTKQCKSLRELVQFGLDLLINIDADWINHPIE
AGDVLHQLLKELARITDHTVGIVIDDYHALVGLTCMINEHKLRLHANSIR
VVAQHLGRDSIENTARTLPNGYVLLASDTNAAIENWRKSRVRSTIDFPLS
EDVSNDPSGRSWWKSFRHRVQQAPKQESLYIPVPELTSGELKALCATFEQ
GGLKREQGRAFTDRLTALAGGRADQMRKLFFGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019368Ribosomal_S23/S29_mit
IPR027417P-loop_NTPase