Gchil8196.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8196.t1
Unique NameGchil8196.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length135
Homology
BLAST of Gchil8196.t1 vs. uniprot
Match: A0A2V3J0T4_9FLOR (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T4_9FLOR)

HSP 1 Score: 218 bits (556), Expect = 2.600e-71
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 0
Query:    1 MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPVMAAGRGRGFPRAPPPRGGR 134
            MSVGIPIKLLHEASPHIVTIEMR GDVYRGTL+SVEDNMNVQLKRVT TR DGKVSTLEH+FIRGSKIRFF+LPDILA+APMFKRVEALK+GRPMEARGLGRGRG G V+ R P   AGRGRGFPR  PPR GR
Sbjct:    1 MSVGIPIKLLHEASPHIVTIEMRMGDVYRGTLTSVEDNMNVQLKRVTLTRRDGKVSTLEHVFIRGSKIRFFILPDILANAPMFKRVEALKEGRPMEARGLGRGRGLGAVSGR-PNPPAGRGRGFPRGAPPRAGR 133          
BLAST of Gchil8196.t1 vs. uniprot
Match: R7QQT6_CHOCR (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQT6_CHOCR)

HSP 1 Score: 157 bits (397), Expect = 3.030e-47
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0
Query:    1 MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVA 110
            MSVGIPIKLLHEASPH+VT+E+  GDVYRGTLSSVEDNMNVQL+RVT T  DGKVS LE++FIRGSKIR+F+LPDILASAPMFKR           ARGLGRGRG  G A
Sbjct:    1 MSVGIPIKLLHEASPHVVTVELHVGDVYRGTLSSVEDNMNVQLRRVTLTARDGKVSNLENVFIRGSKIRYFILPDILASAPMFKR-----------ARGLGRGRGMPGAA 99          
BLAST of Gchil8196.t1 vs. uniprot
Match: A0A7S0T8S9_9RHOD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T8S9_9RHOD)

HSP 1 Score: 154 bits (389), Expect = 7.970e-46
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 0
Query:    1 MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVA 110
            MS+GIPIKLLHEA  H+VT+E R GDVYRGTLSS EDNMNVQL++V  TR DGKV  L+++FIRGSKIRF +LPD+LA+APMFKR+EALK+GR   A  +G GRG   VA
Sbjct:   16 MSIGIPIKLLHEAEAHVVTVETRDGDVYRGTLSSAEDNMNVQLRKVHLTRRDGKVIPLDYVFIRGSKIRFLILPDMLANAPMFKRLEALKEGRSSSAAAVGAGRGRASVA 125          
BLAST of Gchil8196.t1 vs. uniprot
Match: B9H5H6_POPTR (Small nuclear ribonucleoprotein Sm D3 n=13 Tax=Mesangiospermae TaxID=1437183 RepID=B9H5H6_POPTR)

HSP 1 Score: 136 bits (342), Expect = 9.500e-39
Identity = 74/131 (56.49%), Postives = 96/131 (73.28%), Query Frame = 0
Query:    2 SVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPVMAAGRGRGFPRAPPPRG 132
            S+GIP+KLLHEAS HIVT+E+++G++YRG +   EDN N QL+ +T+T  DGKVS LEH+FIRGSK+RF V+PD+L +APMFKR++A   G+     G+GRGR    VA R+   AAGRG     APP RG
Sbjct:    4 SLGIPVKLLHEASGHIVTVELKSGELYRGGMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASL-GVGRGRS---VAMRSKAQAAGRG-----APPGRG 125          
BLAST of Gchil8196.t1 vs. uniprot
Match: A0A5J4YP68_PORPP (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YP68_PORPP)

HSP 1 Score: 134 bits (336), Expect = 6.460e-38
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 0
Query:    1 MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKD 91
            MS+G+PIKLLHEA  H+VT+E R+G+VYRGT+ + EDNMNVQL++V  TR DGKV  L+ +FIRGSK+RF +LPDILA AP+FKR+EALK+
Sbjct:    1 MSIGVPIKLLHEAEAHVVTVETRSGEVYRGTVLAAEDNMNVQLRKVHMTRRDGKVVPLDQVFIRGSKVRFIILPDILAHAPIFKRLEALKN 91          
BLAST of Gchil8196.t1 vs. uniprot
Match: SMD3B_ARATH (Small nuclear ribonucleoprotein SmD3b n=25 Tax=rosids TaxID=71275 RepID=SMD3B_ARATH)

HSP 1 Score: 134 bits (336), Expect = 7.520e-38
Identity = 72/129 (55.81%), Postives = 93/129 (72.09%), Query Frame = 0
Query:    2 SVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPVMAAGRGRGFPRAPPP 130
            S+GIP+KLLHEAS HIVT+E+++G++YRG++   EDN N QL+ +T+T  DGKVS LEH+FIRGSK+RF V+PDIL  APMFKR++A   G+   + G+GRGRGA       P    GRG G   A PP
Sbjct:    4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKS-SSLGVGRGRGA---MRGKPAAGPGRGTGGRGAVPP 128          
BLAST of Gchil8196.t1 vs. uniprot
Match: B9GQ12_POPTR (Small nuclear ribonucleoprotein Sm D3 n=30 Tax=Magnoliopsida TaxID=3398 RepID=B9GQ12_POPTR)

HSP 1 Score: 134 bits (336), Expect = 7.750e-38
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 0
Query:    2 SVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPVMAAGRG 121
            S+GIP+KLLHEAS HIVT+E+++G++YRG++   EDN N QL+ +T+T  DGKVS LEH+FIRGSK+RF V+PD+L +APMFKR++A   G+     G+GRGR    VA R+   A GRG
Sbjct:    4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASL-GVGRGRS---VAMRSKAQATGRG 119          
BLAST of Gchil8196.t1 vs. uniprot
Match: A0A5B6VDH6_9ROSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6VDH6_9ROSI)

HSP 1 Score: 134 bits (337), Expect = 9.380e-38
Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 0
Query:    2 SVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPV----MAAGRG 121
            S+GIP+KLLHEAS HIVT+E+++G++YRG++   EDN N QL+ +TFT  DGKVS LEH+FIRGSK+RF V+PD+L +APMFKR++A   G+   + G+GRGR    VA RA V     AAGRG
Sbjct:    4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKS-SSLGVGRGRA---VAMRAKVSSSAQAAGRG 123          
BLAST of Gchil8196.t1 vs. uniprot
Match: A0A5J5B4C7_9ASTE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5B4C7_9ASTE)

HSP 1 Score: 133 bits (334), Expect = 3.010e-37
Identity = 68/114 (59.65%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    2 SVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPV 115
            S+GIP+KLLHEAS HIVT+E+++G++YRG++   EDN N QL+ +TFT  DGKVS LEH+FIRGSK+RF V+PD+L +APMFKR++A   G+   A G+GRGR    VA RA V
Sbjct:    4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKG-SALGVGRGRA---VAMRARV 113          
BLAST of Gchil8196.t1 vs. uniprot
Match: A0A0K9RF91_SPIOL (Small nuclear ribonucleoprotein Sm D3 n=7 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RF91_SPIOL)

HSP 1 Score: 131 bits (330), Expect = 6.130e-37
Identity = 67/129 (51.94%), Postives = 92/129 (71.32%), Query Frame = 0
Query:    2 SVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTRVDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGLGRGRGAGGVASRAPVMAAGRGRGFPRAPPP 130
            S+GIP+KL+HEA+ H+V++E+++G++YRGT+   EDN N QL  +TFT  DGKVS LEH+FIRGS++RF ++PD+L +APMFKR++A   G+     G+GRGR    VA RA     GRG G     PP
Sbjct:    4 SLGIPVKLMHEATGHVVSVELKSGELYRGTMIECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKRLDARIKGKSTSL-GVGRGRA---VAMRAKAQTGGRGTGGRGVVPP 128          
The following BLAST results are available for this feature:
BLAST of Gchil8196.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0T4_9FLOR2.600e-7185.82Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Grac... [more]
R7QQT6_CHOCR3.030e-4774.55Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Chon... [more]
A0A7S0T8S9_9RHOD7.970e-4669.09Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Eryt... [more]
B9H5H6_POPTR9.500e-3956.49Small nuclear ribonucleoprotein Sm D3 n=13 Tax=Mes... [more]
A0A5J4YP68_PORPP6.460e-3867.03Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Porp... [more]
SMD3B_ARATH7.520e-3855.81Small nuclear ribonucleoprotein SmD3b n=25 Tax=ros... [more]
B9GQ12_POPTR7.750e-3856.67Small nuclear ribonucleoprotein Sm D3 n=30 Tax=Mag... [more]
A0A5B6VDH6_9ROSI9.380e-3858.06Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Goss... [more]
A0A5J5B4C7_9ASTE3.010e-3759.65Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nyss... [more]
A0A0K9RF91_SPIOL6.130e-3751.94Small nuclear ribonucleoprotein Sm D3 n=7 Tax=Chen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 8..73
e-value: 3.5E-16
score: 69.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 9..72
e-value: 5.5E-17
score: 61.2
NoneNo IPR availableGENE3D2.30.30.100coord: 1..84
e-value: 2.0E-29
score: 102.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..134
NoneNo IPR availablePANTHERPTHR23338:SF36SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 2..123
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..123
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 6..75
e-value: 2.74126E-42
score: 132.26
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:667836..668328 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1Gchil8196.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 667836..668328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8196.t1 ID=Gchil8196.t1|Name=Gchil8196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=135bp
MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTR
VDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGL
GRGRGAGGVASRAPVMAAGRGRGFPRAPPPRGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034099SmD3
IPR010920LSM_dom_sf