Gchil8196.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8196.t1
Unique NameGchil8196.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:667836..668328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705776.1
Preferred nameSMD3
PFAMsLSM
Max annot lvl2759|Eukaryota
KEGG koko:K07442,ko:K11088,ko:K18738
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0034715,GO:0034719,GO:0040007,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048519,GO:0048523,GO:0048589,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990141,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue1.49e-43
EggNOG OGsCOG1958@1|root,KOG3172@2759|Eukaryota
EC2.1.1.219,2.1.1.220
DescriptionU7 snRNA binding
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8196Gchil8196Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 667836..668328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1Gchil8196.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 667836..668328 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1.stop1Gchil8196.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 667836..667838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1.CDS1Gchil8196.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 667836..667885 -
Gchil8196.t1.CDS2Gchil8196.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 667974..668328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1.exon1Gchil8196.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 667836..667885 -
Gchil8196.t1.exon2Gchil8196.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 667974..668328 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1.intron1Gchil8196.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 667886..667973 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8196.t1.start1Gchil8196.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 668326..668328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8196.t1 ID=Gchil8196.t1|Name=Gchil8196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=135bp
MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTR
VDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGL
GRGRGAGGVASRAPVMAAGRGRGFPRAPPPRGGR*
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spliced messenger RNA

>Gchil8196.t1 ID=Gchil8196.t1|Name=Gchil8196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004384_pilon:667836..668328- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCGGGATCCCCATAAAGCTTCTTCACGAGGCCTCACCGCACAT
TGTCACAATCGAGATGCGAACTGGAGATGTGTACCGCGGCACCCTATCAT
CCGTTGAGGATAACATGAACGTGCAGTTAAAACGAGTAACATTCACCAGA
GTAGATGGAAAAGTTTCTACTTTAGAACACATTTTTATACGAGGAAGTAA
GATAAGATTCTTCGTTTTGCCGGATATTTTAGCGAGTGCTCCCATGTTTA
AACGAGTCGAGGCTTTGAAGGACGGACGTCCTATGGAGGCTAGAGGTCTG
GGCAGGGGGCGTGGTGCTGGTGGTGTGGCGTCCAGGGCTCCTGTCATGGC
TGCTGGTCGGGGTCGTGGCTTTCCCCGAGCACCGCCACCAAGAGGCGGTC
GTTAA
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protein sequence of Gchil8196.t1

>Gchil8196.t1 ID=Gchil8196.t1|Name=Gchil8196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=135bp
MSVGIPIKLLHEASPHIVTIEMRTGDVYRGTLSSVEDNMNVQLKRVTFTR
VDGKVSTLEHIFIRGSKIRFFVLPDILASAPMFKRVEALKDGRPMEARGL
GRGRGAGGVASRAPVMAAGRGRGFPRAPPPRGGR*
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mRNA from alignment at tig00004384_pilon:667836..668328-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8196.t1 ID=Gchil8196.t1|Name=Gchil8196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=493bp|location=Sequence derived from alignment at tig00004384_pilon:667836..668328- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGTCGGGATCCCCATAAAGCTTCTTCACGAGGCCTCACCGCACAT
TGTCACAATCGAGATGCGAACTGGAGATGTGTACCGCGGCACCCTATCAT
CCGTTGAGGATAACATGAACGTGCAGTTAAAACGAGTAACATTCACCAGA
GTAGATGGAAAAGTTTCTACTTTAGAACACATTTTTATACGAGGAAGTAA
GATAAGATTCTTCGTTTTGCCGGATATTTTAGCGAGTGCTCCCATGTTTA
AACGAGTCGAGGCTTTGAAGGACGGACGTCCTATGGAGGCTAGAGGTCTG
GGCAGGGGGCGTGGTGCTGGTGGTGTGGCGTCCAGGGCTCCTGTCATGGC
TGCTGGTAAGCTATACTTTTTTTTATCTCTATCTTCCTCAGTGAGATGAG
CCACCTTCTTACACACCCAATTTTGTCTTGTTGTTTCTTCTAGGTCGGGG
TCGTGGCTTTCCCCGAGCACCGCCACCAAGAGGCGGTCGTTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:667836..668328-

>Gchil8196.t1 ID=Gchil8196.t1|Name=Gchil8196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00004384_pilon:667836..668328- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGTCGGGATCCCCATAAAGCTTCTTCACGAGGCCTCACCGCACAT
TGTCACAATCGAGATGCGAACTGGAGATGTGTACCGCGGCACCCTATCAT
CCGTTGAGGATAACATGAACGTGCAGTTAAAACGAGTAACATTCACCAGA
GTAGATGGAAAAGTTTCTACTTTAGAACACATTTTTATACGAGGAAGTAA
GATAAGATTCTTCGTTTTGCCGGATATTTTAGCGAGTGCTCCCATGTTTA
AACGAGTCGAGGCTTTGAAGGACGGACGTCCTATGGAGGCTAGAGGTCTG
GGCAGGGGGCGTGGTGCTGGTGGTGTGGCGTCCAGGGCTCCTGTCATGGC
TGCTGGTCGGGGTCGTGGCTTTCCCCGAGCACCGCCACCAAGAGGCGGTC
GTTAA
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