Gchil559.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil559.t1
Unique NameGchil559.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length722
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:148548..150713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil559Gchil559Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 148548..150713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil559.t1.stop1Gchil559.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 148548..148550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil559.t1.CDS1Gchil559.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 148548..150713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil559.t1.exon1Gchil559.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 148548..150713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil559.t1.start1Gchil559.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 150711..150713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil559.t1Gchil559.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 148548..150713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil559.t1 ID=Gchil559.t1|Name=Gchil559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=722bp
MLRNVRFRRLSSLSEYQIIYLFRAGDFDAAIRHFVKRPPEARSDNLCETV
IRACAQVPDSVAASAVFKGMSKPTQAAAAHVVSAFCRERNPYAAFRFLQR
LPPIGLAIDRRFISAVSRAAPNDRTLQDNIRALRAVRIKQPLASASPFFL
QEDSICKEKRPAPPTRRYAIQIAEMEHTLRAAVPNINAVERQWILAQNEE
PTRSDIAVLSAAITALGACGADGAVRSVHVLMNWIGSNLCEEHSGKPKYK
YIANQSAMALLLTSTTKAIAAASSIVPDVCLSVYDTLAALNMSLFQSSLP
LTGAYFKLLQHASLSLDETRQRIDRARRCHVQLDEQAFSMALGAILRCDA
RLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPLMVTTLLSD
MREARIVPTAVTYGLIFSACVIPGDYRSTRRKHALPVTRWQQELKWMEKH
MSEAGVNHTRYSRLSLARAFAHLGMKSRALEEFRAYLTGLKSSIDGHVAS
RMEVEDSFDQMIYNFANCRECMPDGPKTAIHIYEEMKKLQFLPSGHILDS
LLAAYVRMGEPKGAIECAKSFVDHGSMTLSHTGIVHLLEAVAELQDSDAW
WSVRDLCVDNRTFLTLPELRPSVQAFIISFARRQQREICNDMMSIANIQV
SDLDYIFKKKEFLRFRTLLSRRLQRRQDGIGLKGLIKTAVPIDNRRTDQT
RTNSTPRRSRTFYGNSLMPVL*
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spliced messenger RNA

>Gchil559.t1 ID=Gchil559.t1|Name=Gchil559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00004380_pilon:148548..150713- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGCAATGTTCGTTTCCGTCGTTTGTCATCGCTTTCCGAATACCA
AATAATCTATCTCTTTCGCGCAGGCGACTTCGACGCAGCAATCCGCCACT
TCGTCAAGCGACCCCCCGAAGCCCGCTCTGATAATCTTTGCGAAACTGTG
ATCCGCGCCTGTGCCCAAGTCCCGGATTCTGTCGCGGCCAGTGCCGTGTT
TAAGGGCATGTCGAAACCTACACAAGCAGCTGCCGCACATGTTGTTTCCG
CCTTCTGCAGAGAACGAAATCCGTACGCTGCCTTCCGTTTTCTGCAAAGG
CTTCCGCCCATTGGCCTCGCCATTGATCGCAGATTTATCTCTGCTGTTTC
ACGAGCAGCTCCCAATGACCGCACATTGCAAGACAATATCCGTGCACTGC
GCGCAGTACGTATAAAACAGCCATTGGCATCGGCTTCACCTTTTTTTCTG
CAGGAAGACAGCATATGTAAAGAAAAGCGTCCAGCGCCTCCTACACGCCG
TTATGCAATCCAAATTGCAGAAATGGAACACACGCTGCGTGCGGCAGTCC
CCAACATAAACGCCGTGGAACGTCAATGGATACTTGCTCAGAACGAGGAA
CCAACGCGGTCTGATATCGCTGTGTTGTCGGCAGCTATCACTGCACTCGG
TGCATGTGGCGCTGACGGTGCTGTCAGATCTGTACATGTGCTCATGAATT
GGATAGGATCAAACCTCTGTGAAGAGCATTCAGGCAAGCCTAAGTACAAA
TACATCGCCAATCAATCAGCTATGGCATTGCTGCTCACCTCAACCACCAA
AGCCATTGCGGCCGCTTCATCGATTGTACCAGATGTCTGTCTTTCTGTGT
ACGATACACTGGCAGCTTTGAATATGTCACTCTTTCAGAGCAGTCTACCA
CTGACGGGAGCTTACTTCAAGCTCTTACAGCATGCTAGTCTTTCACTCGA
CGAGACACGACAGCGCATTGATCGAGCCAGGCGGTGCCACGTCCAACTGG
ACGAACAGGCATTTTCTATGGCACTCGGAGCCATTCTACGCTGTGACGCT
CGTTTGAATGACAAGCTTGCTGCGGGGAAGGCGTGGATGGATGTAATGAG
AAGTGCTTGTATTCCTCTCACGGTTCACACGTACAACTTGTTCGCGGGTC
AATTGCGCTACTGCAACGATCCTCTGATGGTGACCACTTTGCTCTCAGAT
ATGAGAGAAGCACGTATTGTTCCCACTGCAGTTACTTATGGGCTAATATT
CAGCGCTTGCGTGATCCCAGGCGATTACAGATCGACCCGGAGAAAACATG
CATTACCCGTGACTCGCTGGCAGCAAGAACTCAAATGGATGGAAAAGCAC
ATGAGTGAAGCAGGCGTAAATCACACTCGCTATTCTCGCCTTTCCCTCGC
GAGAGCTTTCGCTCATTTGGGAATGAAGTCTAGGGCATTGGAAGAATTTA
GAGCATATCTCACGGGCTTGAAATCTTCAATTGATGGCCATGTTGCATCT
CGCATGGAGGTTGAAGATTCCTTTGATCAGATGATATACAACTTTGCCAA
TTGCCGGGAATGCATGCCAGACGGGCCCAAAACAGCAATACACATCTATG
AAGAAATGAAAAAGCTGCAGTTTTTACCGTCCGGTCACATTCTCGACTCC
CTGTTAGCTGCTTATGTAAGAATGGGGGAACCTAAAGGCGCTATAGAATG
TGCAAAGAGTTTTGTCGACCACGGAAGTATGACCCTGTCTCACACCGGAA
TTGTCCACCTACTTGAAGCAGTTGCTGAACTCCAAGACTCAGACGCATGG
TGGAGTGTTCGAGACCTTTGTGTAGACAACAGGACTTTCCTGACTTTACC
TGAACTTCGACCAAGTGTCCAAGCGTTCATCATTAGCTTTGCAAGGCGCC
AACAACGAGAGATTTGTAATGATATGATGTCGATTGCGAATATTCAGGTC
TCGGATCTGGATTACATCTTCAAGAAGAAAGAGTTTCTCCGTTTTAGAAC
CCTGTTGTCCAGGAGATTGCAGCGGCGTCAAGATGGGATCGGACTGAAAG
GATTAATAAAAACAGCCGTTCCGATTGACAACAGGCGGACAGATCAAACA
AGAACTAACTCAACTCCAAGAAGATCGAGGACATTTTACGGAAACTCTCT
GATGCCCGTTTTGTGA
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protein sequence of Gchil559.t1

>Gchil559.t1 ID=Gchil559.t1|Name=Gchil559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=722bp
MLRNVRFRRLSSLSEYQIIYLFRAGDFDAAIRHFVKRPPEARSDNLCETV
IRACAQVPDSVAASAVFKGMSKPTQAAAAHVVSAFCRERNPYAAFRFLQR
LPPIGLAIDRRFISAVSRAAPNDRTLQDNIRALRAVRIKQPLASASPFFL
QEDSICKEKRPAPPTRRYAIQIAEMEHTLRAAVPNINAVERQWILAQNEE
PTRSDIAVLSAAITALGACGADGAVRSVHVLMNWIGSNLCEEHSGKPKYK
YIANQSAMALLLTSTTKAIAAASSIVPDVCLSVYDTLAALNMSLFQSSLP
LTGAYFKLLQHASLSLDETRQRIDRARRCHVQLDEQAFSMALGAILRCDA
RLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPLMVTTLLSD
MREARIVPTAVTYGLIFSACVIPGDYRSTRRKHALPVTRWQQELKWMEKH
MSEAGVNHTRYSRLSLARAFAHLGMKSRALEEFRAYLTGLKSSIDGHVAS
RMEVEDSFDQMIYNFANCRECMPDGPKTAIHIYEEMKKLQFLPSGHILDS
LLAAYVRMGEPKGAIECAKSFVDHGSMTLSHTGIVHLLEAVAELQDSDAW
WSVRDLCVDNRTFLTLPELRPSVQAFIISFARRQQREICNDMMSIANIQV
SDLDYIFKKKEFLRFRTLLSRRLQRRQDGIGLKGLIKTAVPIDNRRTDQT
RTNSTPRRSRTFYGNSLMPVL*
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mRNA from alignment at tig00004380_pilon:148548..150713-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil559.t1 ID=Gchil559.t1|Name=Gchil559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00004380_pilon:148548..150713- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGCAATGTTCGTTTCCGTCGTTTGTCATCGCTTTCCGAATACCA
AATAATCTATCTCTTTCGCGCAGGCGACTTCGACGCAGCAATCCGCCACT
TCGTCAAGCGACCCCCCGAAGCCCGCTCTGATAATCTTTGCGAAACTGTG
ATCCGCGCCTGTGCCCAAGTCCCGGATTCTGTCGCGGCCAGTGCCGTGTT
TAAGGGCATGTCGAAACCTACACAAGCAGCTGCCGCACATGTTGTTTCCG
CCTTCTGCAGAGAACGAAATCCGTACGCTGCCTTCCGTTTTCTGCAAAGG
CTTCCGCCCATTGGCCTCGCCATTGATCGCAGATTTATCTCTGCTGTTTC
ACGAGCAGCTCCCAATGACCGCACATTGCAAGACAATATCCGTGCACTGC
GCGCAGTACGTATAAAACAGCCATTGGCATCGGCTTCACCTTTTTTTCTG
CAGGAAGACAGCATATGTAAAGAAAAGCGTCCAGCGCCTCCTACACGCCG
TTATGCAATCCAAATTGCAGAAATGGAACACACGCTGCGTGCGGCAGTCC
CCAACATAAACGCCGTGGAACGTCAATGGATACTTGCTCAGAACGAGGAA
CCAACGCGGTCTGATATCGCTGTGTTGTCGGCAGCTATCACTGCACTCGG
TGCATGTGGCGCTGACGGTGCTGTCAGATCTGTACATGTGCTCATGAATT
GGATAGGATCAAACCTCTGTGAAGAGCATTCAGGCAAGCCTAAGTACAAA
TACATCGCCAATCAATCAGCTATGGCATTGCTGCTCACCTCAACCACCAA
AGCCATTGCGGCCGCTTCATCGATTGTACCAGATGTCTGTCTTTCTGTGT
ACGATACACTGGCAGCTTTGAATATGTCACTCTTTCAGAGCAGTCTACCA
CTGACGGGAGCTTACTTCAAGCTCTTACAGCATGCTAGTCTTTCACTCGA
CGAGACACGACAGCGCATTGATCGAGCCAGGCGGTGCCACGTCCAACTGG
ACGAACAGGCATTTTCTATGGCACTCGGAGCCATTCTACGCTGTGACGCT
CGTTTGAATGACAAGCTTGCTGCGGGGAAGGCGTGGATGGATGTAATGAG
AAGTGCTTGTATTCCTCTCACGGTTCACACGTACAACTTGTTCGCGGGTC
AATTGCGCTACTGCAACGATCCTCTGATGGTGACCACTTTGCTCTCAGAT
ATGAGAGAAGCACGTATTGTTCCCACTGCAGTTACTTATGGGCTAATATT
CAGCGCTTGCGTGATCCCAGGCGATTACAGATCGACCCGGAGAAAACATG
CATTACCCGTGACTCGCTGGCAGCAAGAACTCAAATGGATGGAAAAGCAC
ATGAGTGAAGCAGGCGTAAATCACACTCGCTATTCTCGCCTTTCCCTCGC
GAGAGCTTTCGCTCATTTGGGAATGAAGTCTAGGGCATTGGAAGAATTTA
GAGCATATCTCACGGGCTTGAAATCTTCAATTGATGGCCATGTTGCATCT
CGCATGGAGGTTGAAGATTCCTTTGATCAGATGATATACAACTTTGCCAA
TTGCCGGGAATGCATGCCAGACGGGCCCAAAACAGCAATACACATCTATG
AAGAAATGAAAAAGCTGCAGTTTTTACCGTCCGGTCACATTCTCGACTCC
CTGTTAGCTGCTTATGTAAGAATGGGGGAACCTAAAGGCGCTATAGAATG
TGCAAAGAGTTTTGTCGACCACGGAAGTATGACCCTGTCTCACACCGGAA
TTGTCCACCTACTTGAAGCAGTTGCTGAACTCCAAGACTCAGACGCATGG
TGGAGTGTTCGAGACCTTTGTGTAGACAACAGGACTTTCCTGACTTTACC
TGAACTTCGACCAAGTGTCCAAGCGTTCATCATTAGCTTTGCAAGGCGCC
AACAACGAGAGATTTGTAATGATATGATGTCGATTGCGAATATTCAGGTC
TCGGATCTGGATTACATCTTCAAGAAGAAAGAGTTTCTCCGTTTTAGAAC
CCTGTTGTCCAGGAGATTGCAGCGGCGTCAAGATGGGATCGGACTGAAAG
GATTAATAAAAACAGCCGTTCCGATTGACAACAGGCGGACAGATCAAACA
AGAACTAACTCAACTCCAAGAAGATCGAGGACATTTTACGGAAACTCTCT
GATGCCCGTTTTGTGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:148548..150713-

>Gchil559.t1 ID=Gchil559.t1|Name=Gchil559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2166bp|location=Sequence derived from alignment at tig00004380_pilon:148548..150713- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGCAATGTTCGTTTCCGTCGTTTGTCATCGCTTTCCGAATACCA
AATAATCTATCTCTTTCGCGCAGGCGACTTCGACGCAGCAATCCGCCACT
TCGTCAAGCGACCCCCCGAAGCCCGCTCTGATAATCTTTGCGAAACTGTG
ATCCGCGCCTGTGCCCAAGTCCCGGATTCTGTCGCGGCCAGTGCCGTGTT
TAAGGGCATGTCGAAACCTACACAAGCAGCTGCCGCACATGTTGTTTCCG
CCTTCTGCAGAGAACGAAATCCGTACGCTGCCTTCCGTTTTCTGCAAAGG
CTTCCGCCCATTGGCCTCGCCATTGATCGCAGATTTATCTCTGCTGTTTC
ACGAGCAGCTCCCAATGACCGCACATTGCAAGACAATATCCGTGCACTGC
GCGCAGTACGTATAAAACAGCCATTGGCATCGGCTTCACCTTTTTTTCTG
CAGGAAGACAGCATATGTAAAGAAAAGCGTCCAGCGCCTCCTACACGCCG
TTATGCAATCCAAATTGCAGAAATGGAACACACGCTGCGTGCGGCAGTCC
CCAACATAAACGCCGTGGAACGTCAATGGATACTTGCTCAGAACGAGGAA
CCAACGCGGTCTGATATCGCTGTGTTGTCGGCAGCTATCACTGCACTCGG
TGCATGTGGCGCTGACGGTGCTGTCAGATCTGTACATGTGCTCATGAATT
GGATAGGATCAAACCTCTGTGAAGAGCATTCAGGCAAGCCTAAGTACAAA
TACATCGCCAATCAATCAGCTATGGCATTGCTGCTCACCTCAACCACCAA
AGCCATTGCGGCCGCTTCATCGATTGTACCAGATGTCTGTCTTTCTGTGT
ACGATACACTGGCAGCTTTGAATATGTCACTCTTTCAGAGCAGTCTACCA
CTGACGGGAGCTTACTTCAAGCTCTTACAGCATGCTAGTCTTTCACTCGA
CGAGACACGACAGCGCATTGATCGAGCCAGGCGGTGCCACGTCCAACTGG
ACGAACAGGCATTTTCTATGGCACTCGGAGCCATTCTACGCTGTGACGCT
CGTTTGAATGACAAGCTTGCTGCGGGGAAGGCGTGGATGGATGTAATGAG
AAGTGCTTGTATTCCTCTCACGGTTCACACGTACAACTTGTTCGCGGGTC
AATTGCGCTACTGCAACGATCCTCTGATGGTGACCACTTTGCTCTCAGAT
ATGAGAGAAGCACGTATTGTTCCCACTGCAGTTACTTATGGGCTAATATT
CAGCGCTTGCGTGATCCCAGGCGATTACAGATCGACCCGGAGAAAACATG
CATTACCCGTGACTCGCTGGCAGCAAGAACTCAAATGGATGGAAAAGCAC
ATGAGTGAAGCAGGCGTAAATCACACTCGCTATTCTCGCCTTTCCCTCGC
GAGAGCTTTCGCTCATTTGGGAATGAAGTCTAGGGCATTGGAAGAATTTA
GAGCATATCTCACGGGCTTGAAATCTTCAATTGATGGCCATGTTGCATCT
CGCATGGAGGTTGAAGATTCCTTTGATCAGATGATATACAACTTTGCCAA
TTGCCGGGAATGCATGCCAGACGGGCCCAAAACAGCAATACACATCTATG
AAGAAATGAAAAAGCTGCAGTTTTTACCGTCCGGTCACATTCTCGACTCC
CTGTTAGCTGCTTATGTAAGAATGGGGGAACCTAAAGGCGCTATAGAATG
TGCAAAGAGTTTTGTCGACCACGGAAGTATGACCCTGTCTCACACCGGAA
TTGTCCACCTACTTGAAGCAGTTGCTGAACTCCAAGACTCAGACGCATGG
TGGAGTGTTCGAGACCTTTGTGTAGACAACAGGACTTTCCTGACTTTACC
TGAACTTCGACCAAGTGTCCAAGCGTTCATCATTAGCTTTGCAAGGCGCC
AACAACGAGAGATTTGTAATGATATGATGTCGATTGCGAATATTCAGGTC
TCGGATCTGGATTACATCTTCAAGAAGAAAGAGTTTCTCCGTTTTAGAAC
CCTGTTGTCCAGGAGATTGCAGCGGCGTCAAGATGGGATCGGACTGAAAG
GATTAATAAAAACAGCCGTTCCGATTGACAACAGGCGGACAGATCAAACA
AGAACTAACTCAACTCCAAGAAGATCGAGGACATTTTACGGAAACTCTCT
GATGCCCGTTTTGTGA
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