Gchil559.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil559.t1
Unique NameGchil559.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length722
Homology
BLAST of Gchil559.t1 vs. uniprot
Match: A0A2V3IZM6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZM6_9FLOR)

HSP 1 Score: 922 bits (2384), Expect = 0.000e+0
Identity = 462/722 (63.99%), Postives = 573/722 (79.36%), Query Frame = 0
Query:    1 MLRNVRFRRLSSLSEYQIIYLFRAGDFDAAIRHFVKRPPEARSDNLCETVIRACAQVPDSVAASAVFKGMSKPTQAAAAHVVSAFCRERNPYAAFRFLQRLPPIGLAIDRRFISAVSRAAPNDRTLQDNIRALRAVRIKQPLASASPFFLQEDSICKEKRPAPP-TRRYAIQIAEMEHTLRAAVPNINAVERQWILAQNEEPTRSDIAVLSAAITALGACGADGAVRSVHVLMNWIGSNLCEEHSGKPKYKYIANQSAMALLLTSTTKAIAAASSIVPDVCLSVYDTLAALNMSLFQSSLPLTGAYFKLLQHASLSLDETRQRIDRARRCHVQLDEQAFSMALGAILRCDARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPLMVTTLLSDMREARIVPTAVTYGLIFSACVIPGDYRSTRRKHALPVTRWQQELKWMEKHMSEAGVNHTRYSRLSLARAFAHLGMKSRALEEFRAYLTGLKSSIDGHVASRMEVEDSFDQMIYNFANCRECMPDGPKTAIHIYEEMKKLQFLPSGHILDSLLAAYVRMGEPKGAIECAKSFVDHGSMTLSHTGIVHLLEAVAELQDSDAWWSVRDLCVDNRTFLTLPELRPSVQAFIISFARRQQREICNDMMSIANIQVSDLDYIFKKKEFLRFRTLLSRRLQRRQDGIGLKGLIKTAVPIDNRRTDQTRTNSTPRRSRTFYGNSLMPVL 721
            MLR    RR  SLSE QI++L R+GD+ +A RHF KRPP ARS++L ET IRACAQVPDSVAA A+FKGM  PTQ AAAHV+SA CRER   AAFRFL  LP +GL+ID+RFISAV R AP+D  L  ++RALRAVR +QPLAS++PFF+ ED    E    P  TRRYA Q+A+MEH LRAA+PN+  V+++W LAQ++EP RSD+AVLSAAI+   ACG DGA +++ VL++WI +NL +E +G+ K  Y AN S MALLLT++TKAIAAAS  VPDVCLS YD L A+ + LF SSLP TGAYFKLLQHA LSL+ET+QRI+RA+R H+QLDEQAFSMALGAILRCD  L+ KLAAGKAWMDVMRSACIPLT+HTYNLFAGQLRYCN+P MVTTLLSDM +  +VPTAVTYGLIFSACVIPGDYRS  RKHALPV  WQQEL+ MEK M ++ V HTR SRLSLARA+AHLG+KSRAL EF  YL   + +    V SRMEVED+++QMIYNFA+CREC PDGP++A+H++E+M+K  F PSG ILDS+L A+VRMG+ + A+ECAKSF   GSMTLSH+G+ HLL+A+AEL D++AWWSVR LCVDN    T+PE++ SVQ F++SFAR+QQR++C+DMMSIA I++SDL+YIF ++EFLRFR  +SRR+ + Q+G G     + A+  +   ++ T++ + PR SRT + NSL+P +
Sbjct:    1 MLRQNSIRRFCSLSEPQIVHLLRSGDYHSAFRHFAKRPPHARSNDLYETAIRACAQVPDSVAAKALFKGMPDPTQTAAAHVISALCREREAQAAFRFLHALPSLGLSIDKRFISAVFRVAPSDHVLHSSLRALRAVRTRQPLASSAPFFIHEDENLAESPSKPHLTRRYAKQVADMEHALRAAIPNLKRVDKKWRLAQSKEPMRSDVAVLSAAISTFIACGRDGAEKAITVLVSWIRANLYDEEAGRAKQTYTANPSTMALLLTTSTKAIAAASPYVPDVCLSAYDALTAMKLPLFDSSLPYTGAYFKLLQHAGLSLEETQQRIERAKRRHIQLDEQAFSMALGAILRCDEHLSLKLAAGKAWMDVMRSACIPLTIHTYNLFAGQLRYCNNPDMVTTLLSDMTQTGLVPTAVTYGLIFSACVIPGDYRSGSRKHALPVNHWQQELEMMEKRMHKSSVGHTRNSRLSLARAYAHLGIKSRALAEFDEYLRSSQKAEAETVVSRMEVEDAYNQMIYNFAHCRECRPDGPQSAVHLFEQMEKNGFAPSGLILDSMLVAFVRMGDTQRAVECAKSFAVRGSMTLSHSGLTHLLQALAELHDAEAWWSVRSLCVDNAHLFTVPEVKQSVQQFVMSFARKQQRDVCDDMMSIAGIEISDLEYIFSRREFLRFRRQISRRVHQNQEG-GSNAYSRNAISAEAHPSEMTKSKAAPRCSRTIHVNSLVPAV 721          
BLAST of Gchil559.t1 vs. uniprot
Match: R7Q4N3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4N3_CHOCR)

HSP 1 Score: 389 bits (998), Expect = 4.310e-125
Identity = 203/397 (51.13%), Postives = 271/397 (68.26%), Query Frame = 0
Query:  281 LSVYDTLAALNMSLFQSSLPLTGAYFKLLQHASLSLDETRQRIDRARRCHVQLDEQAFSMALGAILRCDARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPLMVTTLLSDMREARIVPTAVTYGLIFSACVIPGDYRSTRRKHALPVTRWQQELKWMEKHMSEAGVNHTRYSRLSLARAFAHLGMKSRALEEFRAYLTGLKSSIDGHVASRMEVEDSFDQMIYNFANCRECMPDGPKTAIHIYEEMKKLQFLPSGHILDSLLAAYVRMGEPKGAIECAKSFV---DHGSMTLSHTGIVHLLEAVAELQDSDAWWSVRDLCVDNRTFLTLPELRPSVQAFIISFARRQQREICNDMMSIANIQVSDLDYIFKKKEFLRFRTLLSRRLQ 674
            LS +D L  + +  F +SLP+ G+YFK+LQHA LSL ETR RID  +  H+QLDEQ FSMALGAILRCD R+ DKLAAGK W+  MR A IPLTV TYNLFAGQLRYCNDP MV++LLSDM  A +VPT VTYGL+FSACVIPG Y S  R+ AL VT W+  L+ M +HM+ +GV HT  SRLSLARA+AHLG+   A+EEF  +L+          AS+ EVED++ QM++NFA+CRE   DGP+  + +YE MK+ +     H +D +L   VR GE + A+E A+  V    H  +T+S  G+ HLL A  E+ D+  W   R L +++   L +P+L   V+  +ISFARRQ  ++C D+M +ANI++ DL+Y+ + +EF RFR   S++++
Sbjct:    3 LSAFDALWRMELPGFSTSLPIAGSYFKVLQHAGLSLSETRDRIDSLKEHHIQLDEQGFSMALGAILRCDERVLDKLAAGKEWVQKMRQAGIPLTVQTYNLFAGQLRYCNDPEMVSSLLSDMTTAGVVPTPVTYGLVFSACVIPGAYTSPSRRRALSVTMWESVLQAMSEHMAVSGVVHTANSRLSLARAYAHLGLTGPAMEEFEIFLSQRGDGDFKSAASQREVEDAYFQMMFNFAHCREGSSDGPEMVMTLYERMKEERVAVPRHAIDCVLVGCVRKGEGERALEYARDAVAADPHLRLTVS--GLKHLLMAHVEVCDAMYWERTRKLVLNSSEILGMPQLAHIVEKVVISFARRQSMDVCKDIMLMANIEMKDLEYVVRGREFTRFRDRGSQQVE 397          
The following BLAST results are available for this feature:
BLAST of Gchil559.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZM6_9FLOR0.000e+063.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q4N3_CHOCR4.310e-12551.13Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 316..336
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 363..570
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 450..648
e-value: 1.7E-6
score: 29.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 301..445
e-value: 3.6E-6
score: 28.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:148548..150713 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil559.t1Gchil559.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004380_pilon 148548..150713 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil559.t1 ID=Gchil559.t1|Name=Gchil559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=722bp
MLRNVRFRRLSSLSEYQIIYLFRAGDFDAAIRHFVKRPPEARSDNLCETV
IRACAQVPDSVAASAVFKGMSKPTQAAAAHVVSAFCRERNPYAAFRFLQR
LPPIGLAIDRRFISAVSRAAPNDRTLQDNIRALRAVRIKQPLASASPFFL
QEDSICKEKRPAPPTRRYAIQIAEMEHTLRAAVPNINAVERQWILAQNEE
PTRSDIAVLSAAITALGACGADGAVRSVHVLMNWIGSNLCEEHSGKPKYK
YIANQSAMALLLTSTTKAIAAASSIVPDVCLSVYDTLAALNMSLFQSSLP
LTGAYFKLLQHASLSLDETRQRIDRARRCHVQLDEQAFSMALGAILRCDA
RLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPLMVTTLLSD
MREARIVPTAVTYGLIFSACVIPGDYRSTRRKHALPVTRWQQELKWMEKH
MSEAGVNHTRYSRLSLARAFAHLGMKSRALEEFRAYLTGLKSSIDGHVAS
RMEVEDSFDQMIYNFANCRECMPDGPKTAIHIYEEMKKLQFLPSGHILDS
LLAAYVRMGEPKGAIECAKSFVDHGSMTLSHTGIVHLLEAVAELQDSDAW
WSVRDLCVDNRTFLTLPELRPSVQAFIISFARRQQREICNDMMSIANIQV
SDLDYIFKKKEFLRFRTLLSRRLQRRQDGIGLKGLIKTAVPIDNRRTDQT
RTNSTPRRSRTFYGNSLMPVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf