Gchil3809.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3809.t1
Unique NameGchil3809.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length803
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:515541..517949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo5g042810.1
PFAMsPPR,PPR_2,PPR_3
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Evalue1.36e-06
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37IFV@33090|Viridiplantae,3GD6H@35493|Streptophyta,3HPD3@3699|Brassicales
DescriptionPentatricopeptide repeat-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3809Gchil3809Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 515541..517949 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3809.t1.start1Gchil3809.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 515541..515543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3809.t1.CDS1Gchil3809.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 515541..517949 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3809.t1.exon1Gchil3809.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 515541..517949 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3809.t1.stop1Gchil3809.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 517947..517949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3809.t1Gchil3809.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 515541..517949 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=803bp
MRTYVGRTALRGATQLLSGGAPRGAVLVGRTAIASKSLCSTTPLHSDGAR
RPEDLQISANEKLPLSVEAATDAQPQGEPVVEIISKDVSSTSVLVELEED
VENGREGTVESTGIELKEPLEESEVGGTQPSDGSHRDPKGFSSSLNNLLQ
KGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRI
SCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSY
NYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQR
AFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKY
VSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFR
GGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGI
MREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESV
EGSEKSLEEEEERLEASATVAEITGADSTDATDAMSKEDDPLHHDEVEAA
GQDLSTPKLETEVTESYRNNPKNIEYDDVSKEYIRTRLRPSTVGIEELNC
VISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGG
MRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVL
PSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ
QQRDEWKGEAVTSAGETNSDMPDNDVAIDSERPENASNSQAINENAEEVA
KQ*
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spliced messenger RNA

>Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2409bp|location=Sequence derived from alignment at tig00000010_pilon:515541..517949+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTACCTACGTCGGCAGAACAGCTCTTCGTGGCGCTACACAGCTTCT
TTCTGGCGGCGCCCCTCGCGGCGCAGTTTTGGTTGGTCGCACTGCCATTG
CATCAAAATCACTATGTTCCACCACCCCGCTTCACAGCGATGGAGCTCGA
AGACCAGAAGACTTGCAAATATCTGCGAACGAGAAGCTGCCGCTTTCTGT
GGAGGCTGCTACGGACGCTCAACCCCAAGGTGAGCCTGTTGTCGAGATTA
TCTCGAAGGATGTATCTTCTACTTCTGTTCTGGTCGAACTTGAAGAAGAT
GTTGAAAATGGAAGAGAAGGGACGGTTGAATCTACTGGTATAGAACTAAA
AGAACCGCTAGAAGAATCAGAGGTTGGGGGGACTCAACCCTCTGACGGAT
CACATCGTGATCCAAAAGGCTTTTCTTCGTCCCTCAATAATTTGCTACAG
AAAGGCGCAGTTCGCACAGCTTTATGGCAGTTTGCGAATGCCTTGAAGAC
CTCAGATCGCTCAAAGGTCGACAAAGATGCAATAAGTCTAATGATCCCTG
TTCTCGGGAGAAGTGGCTGGTCCCCTACATCTCTCGAAACGCTTAGAATC
TCCTGTGAAAGGCAGTATGAGCTAGGAAGTGGACTGTACAATTGTGGTTT
ACACGCAGTGTCACGATCAGGTGATACAAAGTCAATGAGAGAGATCCTAA
CTGCAATGTGGACTCTTCCTAAAGATTCTCAACCGAATGCAACTTCGTAC
AACTATTTGATTGGTGCGTATATGTACCGCGGACAGGTCGACGAGGCCTT
CAATGTACTTAACGAAATGAAGGACCTTCTCATACACCCCACTTTTGCAA
CGTACCATTCATTAATTACTGGTTGTCTTCGACGCCGCGATTCTCAAAGA
GCGTTTTCAACTCTGCTGGCTGTCGAAAAGCAGCGTTTTGATGTGAGTGC
AATGACGGTCGCCCAAGTGCTTGTCAGCGCGTCAAACAATGATGACTTTG
ACAACGTCAGAGTTCTCTTGGGCAAATACGAATCGGCTCTTCCGAAATAC
GTTTCAGAAGTCCACCGCATCGCGGAGTCACGCCACATGTACCGCATCGG
TAAACACACTCGAACCTCCAAAGAAGAAAGAGCTGCCATGAGAGGCACAC
CCAAATTGGAAATCGGTGCAATATCTGCCGTTCTCCATTGTGCGTTCAGA
GGAGGGCTTCCTGATGTTGCATTGCATGCATGGCAGATTTTGGAAAAAAC
GTATCCAGACTTTGAACCACCTTCCTCGCTTTGGTACTGTTTGATCGGTG
CATTTTCTGGTGGTGGCGACTTCTCGACCGCTATAGATTTGGTTGGAATA
ATGCGAGAGAAGGGTATCAATCCTTCCTTGCGGGATTTGGACATGGCGTT
GACTCGTCCGATGGCATCAGATATAGAACAAGTTGATACTCAGTACTATA
GATTGGTTGACAGACTTGAGGGTAAAGTGCACAATGAAGAGGAATCTGTG
GAAGGGAGTGAGAAGAGTCTCGAAGAAGAGGAAGAAAGGCTCGAGGCTAG
TGCGACTGTCGCCGAAATAACTGGCGCTGATAGCACCGACGCCACTGACG
CGATGAGCAAGGAGGACGATCCCCTTCATCATGACGAAGTAGAAGCCGCA
GGTCAAGATCTGAGCACGCCGAAGCTAGAAACAGAAGTTACAGAATCTTA
CAGAAACAATCCCAAGAACATAGAGTATGATGACGTCTCTAAGGAATACA
TTAGGACAAGATTGAGACCGAGTACTGTTGGTATTGAGGAACTCAACTGT
GTGATTTCCGCTTGTTCAACGGCCCAAGATCTTGAGAGAGCGTTTCAAAC
GTACGACGAGGTGGAATCTCGATTTCAATTGGAAAAGAACATTGATACCT
TCAACGCGTTGCTAGAAGGCTGTGTTCAAACAAGGCATATCCGTGGTGGC
ATGAGAGTTTTGCAGGAGATGGAAAGCCAGGGATTCAATTTGAGTGGCCA
AACGCTGCACTTGGCGGTACGTTTGATGATCCGAGGGGGACGAAGTGAGT
CAACATTGCACATGGTTGAAGAAGCTCGGCAGAATGGGGATTACGTGCTA
CCGTCTACGTACCAGATGTTGCTGAGACACTACCTAAGAAGTGACGCGAT
TGAGCGAGCTCACAGAATGATGGAACTGGGGAAGGAAGCGGGTCTCTCTG
AAAGGGCTTTGACTGGACGACTTCCTTTCCAGTCATTTGATCAACTGCAA
CAGCAGAGAGACGAATGGAAAGGTGAAGCAGTTACGAGCGCTGGTGAGAC
GAACAGCGATATGCCAGACAATGATGTGGCGATTGATAGTGAACGTCCTG
AAAATGCTAGTAATAGTCAGGCGATTAATGAAAACGCGGAAGAAGTTGCA
AAGCAGTAA
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protein sequence of Gchil3809.t1

>Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=803bp
MRTYVGRTALRGATQLLSGGAPRGAVLVGRTAIASKSLCSTTPLHSDGAR
RPEDLQISANEKLPLSVEAATDAQPQGEPVVEIISKDVSSTSVLVELEED
VENGREGTVESTGIELKEPLEESEVGGTQPSDGSHRDPKGFSSSLNNLLQ
KGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRI
SCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSY
NYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQR
AFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKY
VSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFR
GGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGI
MREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESV
EGSEKSLEEEEERLEASATVAEITGADSTDATDAMSKEDDPLHHDEVEAA
GQDLSTPKLETEVTESYRNNPKNIEYDDVSKEYIRTRLRPSTVGIEELNC
VISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGG
MRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVL
PSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ
QQRDEWKGEAVTSAGETNSDMPDNDVAIDSERPENASNSQAINENAEEVA
KQ*
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mRNA from alignment at tig00000010_pilon:515541..517949+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2409bp|location=Sequence derived from alignment at tig00000010_pilon:515541..517949+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTACCTACGTCGGCAGAACAGCTCTTCGTGGCGCTACACAGCTTCT TTCTGGCGGCGCCCCTCGCGGCGCAGTTTTGGTTGGTCGCACTGCCATTG CATCAAAATCACTATGTTCCACCACCCCGCTTCACAGCGATGGAGCTCGA AGACCAGAAGACTTGCAAATATCTGCGAACGAGAAGCTGCCGCTTTCTGT GGAGGCTGCTACGGACGCTCAACCCCAAGGTGAGCCTGTTGTCGAGATTA TCTCGAAGGATGTATCTTCTACTTCTGTTCTGGTCGAACTTGAAGAAGAT GTTGAAAATGGAAGAGAAGGGACGGTTGAATCTACTGGTATAGAACTAAA AGAACCGCTAGAAGAATCAGAGGTTGGGGGGACTCAACCCTCTGACGGAT CACATCGTGATCCAAAAGGCTTTTCTTCGTCCCTCAATAATTTGCTACAG AAAGGCGCAGTTCGCACAGCTTTATGGCAGTTTGCGAATGCCTTGAAGAC CTCAGATCGCTCAAAGGTCGACAAAGATGCAATAAGTCTAATGATCCCTG TTCTCGGGAGAAGTGGCTGGTCCCCTACATCTCTCGAAACGCTTAGAATC TCCTGTGAAAGGCAGTATGAGCTAGGAAGTGGACTGTACAATTGTGGTTT ACACGCAGTGTCACGATCAGGTGATACAAAGTCAATGAGAGAGATCCTAA CTGCAATGTGGACTCTTCCTAAAGATTCTCAACCGAATGCAACTTCGTAC AACTATTTGATTGGTGCGTATATGTACCGCGGACAGGTCGACGAGGCCTT CAATGTACTTAACGAAATGAAGGACCTTCTCATACACCCCACTTTTGCAA CGTACCATTCATTAATTACTGGTTGTCTTCGACGCCGCGATTCTCAAAGA GCGTTTTCAACTCTGCTGGCTGTCGAAAAGCAGCGTTTTGATGTGAGTGC AATGACGGTCGCCCAAGTGCTTGTCAGCGCGTCAAACAATGATGACTTTG ACAACGTCAGAGTTCTCTTGGGCAAATACGAATCGGCTCTTCCGAAATAC GTTTCAGAAGTCCACCGCATCGCGGAGTCACGCCACATGTACCGCATCGG TAAACACACTCGAACCTCCAAAGAAGAAAGAGCTGCCATGAGAGGCACAC CCAAATTGGAAATCGGTGCAATATCTGCCGTTCTCCATTGTGCGTTCAGA GGAGGGCTTCCTGATGTTGCATTGCATGCATGGCAGATTTTGGAAAAAAC GTATCCAGACTTTGAACCACCTTCCTCGCTTTGGTACTGTTTGATCGGTG CATTTTCTGGTGGTGGCGACTTCTCGACCGCTATAGATTTGGTTGGAATA ATGCGAGAGAAGGGTATCAATCCTTCCTTGCGGGATTTGGACATGGCGTT GACTCGTCCGATGGCATCAGATATAGAACAAGTTGATACTCAGTACTATA GATTGGTTGACAGACTTGAGGGTAAAGTGCACAATGAAGAGGAATCTGTG GAAGGGAGTGAGAAGAGTCTCGAAGAAGAGGAAGAAAGGCTCGAGGCTAG TGCGACTGTCGCCGAAATAACTGGCGCTGATAGCACCGACGCCACTGACG CGATGAGCAAGGAGGACGATCCCCTTCATCATGACGAAGTAGAAGCCGCA GGTCAAGATCTGAGCACGCCGAAGCTAGAAACAGAAGTTACAGAATCTTA CAGAAACAATCCCAAGAACATAGAGTATGATGACGTCTCTAAGGAATACA TTAGGACAAGATTGAGACCGAGTACTGTTGGTATTGAGGAACTCAACTGT GTGATTTCCGCTTGTTCAACGGCCCAAGATCTTGAGAGAGCGTTTCAAAC GTACGACGAGGTGGAATCTCGATTTCAATTGGAAAAGAACATTGATACCT TCAACGCGTTGCTAGAAGGCTGTGTTCAAACAAGGCATATCCGTGGTGGC ATGAGAGTTTTGCAGGAGATGGAAAGCCAGGGATTCAATTTGAGTGGCCA AACGCTGCACTTGGCGGTACGTTTGATGATCCGAGGGGGACGAAGTGAGT CAACATTGCACATGGTTGAAGAAGCTCGGCAGAATGGGGATTACGTGCTA CCGTCTACGTACCAGATGTTGCTGAGACACTACCTAAGAAGTGACGCGAT TGAGCGAGCTCACAGAATGATGGAACTGGGGAAGGAAGCGGGTCTCTCTG AAAGGGCTTTGACTGGACGACTTCCTTTCCAGTCATTTGATCAACTGCAA CAGCAGAGAGACGAATGGAAAGGTGAAGCAGTTACGAGCGCTGGTGAGAC GAACAGCGATATGCCAGACAATGATGTGGCGATTGATAGTGAACGTCCTG AAAATGCTAGTAATAGTCAGGCGATTAATGAAAACGCGGAAGAAGTTGCA AAGCAGTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:515541..517949+

>Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2409bp|location=Sequence derived from alignment at tig00000010_pilon:515541..517949+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTACCTACGTCGGCAGAACAGCTCTTCGTGGCGCTACACAGCTTCT
TTCTGGCGGCGCCCCTCGCGGCGCAGTTTTGGTTGGTCGCACTGCCATTG
CATCAAAATCACTATGTTCCACCACCCCGCTTCACAGCGATGGAGCTCGA
AGACCAGAAGACTTGCAAATATCTGCGAACGAGAAGCTGCCGCTTTCTGT
GGAGGCTGCTACGGACGCTCAACCCCAAGGTGAGCCTGTTGTCGAGATTA
TCTCGAAGGATGTATCTTCTACTTCTGTTCTGGTCGAACTTGAAGAAGAT
GTTGAAAATGGAAGAGAAGGGACGGTTGAATCTACTGGTATAGAACTAAA
AGAACCGCTAGAAGAATCAGAGGTTGGGGGGACTCAACCCTCTGACGGAT
CACATCGTGATCCAAAAGGCTTTTCTTCGTCCCTCAATAATTTGCTACAG
AAAGGCGCAGTTCGCACAGCTTTATGGCAGTTTGCGAATGCCTTGAAGAC
CTCAGATCGCTCAAAGGTCGACAAAGATGCAATAAGTCTAATGATCCCTG
TTCTCGGGAGAAGTGGCTGGTCCCCTACATCTCTCGAAACGCTTAGAATC
TCCTGTGAAAGGCAGTATGAGCTAGGAAGTGGACTGTACAATTGTGGTTT
ACACGCAGTGTCACGATCAGGTGATACAAAGTCAATGAGAGAGATCCTAA
CTGCAATGTGGACTCTTCCTAAAGATTCTCAACCGAATGCAACTTCGTAC
AACTATTTGATTGGTGCGTATATGTACCGCGGACAGGTCGACGAGGCCTT
CAATGTACTTAACGAAATGAAGGACCTTCTCATACACCCCACTTTTGCAA
CGTACCATTCATTAATTACTGGTTGTCTTCGACGCCGCGATTCTCAAAGA
GCGTTTTCAACTCTGCTGGCTGTCGAAAAGCAGCGTTTTGATGTGAGTGC
AATGACGGTCGCCCAAGTGCTTGTCAGCGCGTCAAACAATGATGACTTTG
ACAACGTCAGAGTTCTCTTGGGCAAATACGAATCGGCTCTTCCGAAATAC
GTTTCAGAAGTCCACCGCATCGCGGAGTCACGCCACATGTACCGCATCGG
TAAACACACTCGAACCTCCAAAGAAGAAAGAGCTGCCATGAGAGGCACAC
CCAAATTGGAAATCGGTGCAATATCTGCCGTTCTCCATTGTGCGTTCAGA
GGAGGGCTTCCTGATGTTGCATTGCATGCATGGCAGATTTTGGAAAAAAC
GTATCCAGACTTTGAACCACCTTCCTCGCTTTGGTACTGTTTGATCGGTG
CATTTTCTGGTGGTGGCGACTTCTCGACCGCTATAGATTTGGTTGGAATA
ATGCGAGAGAAGGGTATCAATCCTTCCTTGCGGGATTTGGACATGGCGTT
GACTCGTCCGATGGCATCAGATATAGAACAAGTTGATACTCAGTACTATA
GATTGGTTGACAGACTTGAGGGTAAAGTGCACAATGAAGAGGAATCTGTG
GAAGGGAGTGAGAAGAGTCTCGAAGAAGAGGAAGAAAGGCTCGAGGCTAG
TGCGACTGTCGCCGAAATAACTGGCGCTGATAGCACCGACGCCACTGACG
CGATGAGCAAGGAGGACGATCCCCTTCATCATGACGAAGTAGAAGCCGCA
GGTCAAGATCTGAGCACGCCGAAGCTAGAAACAGAAGTTACAGAATCTTA
CAGAAACAATCCCAAGAACATAGAGTATGATGACGTCTCTAAGGAATACA
TTAGGACAAGATTGAGACCGAGTACTGTTGGTATTGAGGAACTCAACTGT
GTGATTTCCGCTTGTTCAACGGCCCAAGATCTTGAGAGAGCGTTTCAAAC
GTACGACGAGGTGGAATCTCGATTTCAATTGGAAAAGAACATTGATACCT
TCAACGCGTTGCTAGAAGGCTGTGTTCAAACAAGGCATATCCGTGGTGGC
ATGAGAGTTTTGCAGGAGATGGAAAGCCAGGGATTCAATTTGAGTGGCCA
AACGCTGCACTTGGCGGTACGTTTGATGATCCGAGGGGGACGAAGTGAGT
CAACATTGCACATGGTTGAAGAAGCTCGGCAGAATGGGGATTACGTGCTA
CCGTCTACGTACCAGATGTTGCTGAGACACTACCTAAGAAGTGACGCGAT
TGAGCGAGCTCACAGAATGATGGAACTGGGGAAGGAAGCGGGTCTCTCTG
AAAGGGCTTTGACTGGACGACTTCCTTTCCAGTCATTTGATCAACTGCAA
CAGCAGAGAGACGAATGGAAAGGTGAAGCAGTTACGAGCGCTGGTGAGAC
GAACAGCGATATGCCAGACAATGATGTGGCGATTGATAGTGAACGTCCTG
AAAATGCTAGTAATAGTCAGGCGATTAATGAAAACGCGGAAGAAGTTGCA
AAGCAGTAA
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