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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 3712.Bo5g042810.1 |
| PFAMs | PPR,PPR_2,PPR_3 |
| Max annot lvl | 35493|Streptophyta |
| GOs | GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363 |
| Evalue | 1.36e-06 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota,37IFV@33090|Viridiplantae,3GD6H@35493|Streptophyta,3HPD3@3699|Brassicales |
| Description | Pentatricopeptide repeat-containing protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=803bp MRTYVGRTALRGATQLLSGGAPRGAVLVGRTAIASKSLCSTTPLHSDGAR RPEDLQISANEKLPLSVEAATDAQPQGEPVVEIISKDVSSTSVLVELEED VENGREGTVESTGIELKEPLEESEVGGTQPSDGSHRDPKGFSSSLNNLLQ KGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRI SCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSY NYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQR AFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKY VSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFR GGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGI MREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESV EGSEKSLEEEEERLEASATVAEITGADSTDATDAMSKEDDPLHHDEVEAA GQDLSTPKLETEVTESYRNNPKNIEYDDVSKEYIRTRLRPSTVGIEELNC VISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGG MRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVL PSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ QQRDEWKGEAVTSAGETNSDMPDNDVAIDSERPENASNSQAINENAEEVA KQ* back to topspliced messenger RNA >Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2409bp|location=Sequence derived from alignment at tig00000010_pilon:515541..517949+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTACCTACGTCGGCAGAACAGCTCTTCGTGGCGCTACACAGCTTCT TTCTGGCGGCGCCCCTCGCGGCGCAGTTTTGGTTGGTCGCACTGCCATTG CATCAAAATCACTATGTTCCACCACCCCGCTTCACAGCGATGGAGCTCGA AGACCAGAAGACTTGCAAATATCTGCGAACGAGAAGCTGCCGCTTTCTGT GGAGGCTGCTACGGACGCTCAACCCCAAGGTGAGCCTGTTGTCGAGATTA TCTCGAAGGATGTATCTTCTACTTCTGTTCTGGTCGAACTTGAAGAAGAT GTTGAAAATGGAAGAGAAGGGACGGTTGAATCTACTGGTATAGAACTAAA AGAACCGCTAGAAGAATCAGAGGTTGGGGGGACTCAACCCTCTGACGGAT CACATCGTGATCCAAAAGGCTTTTCTTCGTCCCTCAATAATTTGCTACAG AAAGGCGCAGTTCGCACAGCTTTATGGCAGTTTGCGAATGCCTTGAAGAC CTCAGATCGCTCAAAGGTCGACAAAGATGCAATAAGTCTAATGATCCCTG TTCTCGGGAGAAGTGGCTGGTCCCCTACATCTCTCGAAACGCTTAGAATC TCCTGTGAAAGGCAGTATGAGCTAGGAAGTGGACTGTACAATTGTGGTTT ACACGCAGTGTCACGATCAGGTGATACAAAGTCAATGAGAGAGATCCTAA CTGCAATGTGGACTCTTCCTAAAGATTCTCAACCGAATGCAACTTCGTAC AACTATTTGATTGGTGCGTATATGTACCGCGGACAGGTCGACGAGGCCTT CAATGTACTTAACGAAATGAAGGACCTTCTCATACACCCCACTTTTGCAA CGTACCATTCATTAATTACTGGTTGTCTTCGACGCCGCGATTCTCAAAGA GCGTTTTCAACTCTGCTGGCTGTCGAAAAGCAGCGTTTTGATGTGAGTGC AATGACGGTCGCCCAAGTGCTTGTCAGCGCGTCAAACAATGATGACTTTG ACAACGTCAGAGTTCTCTTGGGCAAATACGAATCGGCTCTTCCGAAATAC GTTTCAGAAGTCCACCGCATCGCGGAGTCACGCCACATGTACCGCATCGG TAAACACACTCGAACCTCCAAAGAAGAAAGAGCTGCCATGAGAGGCACAC CCAAATTGGAAATCGGTGCAATATCTGCCGTTCTCCATTGTGCGTTCAGA GGAGGGCTTCCTGATGTTGCATTGCATGCATGGCAGATTTTGGAAAAAAC GTATCCAGACTTTGAACCACCTTCCTCGCTTTGGTACTGTTTGATCGGTG CATTTTCTGGTGGTGGCGACTTCTCGACCGCTATAGATTTGGTTGGAATA ATGCGAGAGAAGGGTATCAATCCTTCCTTGCGGGATTTGGACATGGCGTT GACTCGTCCGATGGCATCAGATATAGAACAAGTTGATACTCAGTACTATA GATTGGTTGACAGACTTGAGGGTAAAGTGCACAATGAAGAGGAATCTGTG GAAGGGAGTGAGAAGAGTCTCGAAGAAGAGGAAGAAAGGCTCGAGGCTAG TGCGACTGTCGCCGAAATAACTGGCGCTGATAGCACCGACGCCACTGACG CGATGAGCAAGGAGGACGATCCCCTTCATCATGACGAAGTAGAAGCCGCA GGTCAAGATCTGAGCACGCCGAAGCTAGAAACAGAAGTTACAGAATCTTA CAGAAACAATCCCAAGAACATAGAGTATGATGACGTCTCTAAGGAATACA TTAGGACAAGATTGAGACCGAGTACTGTTGGTATTGAGGAACTCAACTGT GTGATTTCCGCTTGTTCAACGGCCCAAGATCTTGAGAGAGCGTTTCAAAC GTACGACGAGGTGGAATCTCGATTTCAATTGGAAAAGAACATTGATACCT TCAACGCGTTGCTAGAAGGCTGTGTTCAAACAAGGCATATCCGTGGTGGC ATGAGAGTTTTGCAGGAGATGGAAAGCCAGGGATTCAATTTGAGTGGCCA AACGCTGCACTTGGCGGTACGTTTGATGATCCGAGGGGGACGAAGTGAGT CAACATTGCACATGGTTGAAGAAGCTCGGCAGAATGGGGATTACGTGCTA CCGTCTACGTACCAGATGTTGCTGAGACACTACCTAAGAAGTGACGCGAT TGAGCGAGCTCACAGAATGATGGAACTGGGGAAGGAAGCGGGTCTCTCTG AAAGGGCTTTGACTGGACGACTTCCTTTCCAGTCATTTGATCAACTGCAA CAGCAGAGAGACGAATGGAAAGGTGAAGCAGTTACGAGCGCTGGTGAGAC GAACAGCGATATGCCAGACAATGATGTGGCGATTGATAGTGAACGTCCTG AAAATGCTAGTAATAGTCAGGCGATTAATGAAAACGCGGAAGAAGTTGCA AAGCAGTAA back to topprotein sequence of Gchil3809.t1 >Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=803bp
MRTYVGRTALRGATQLLSGGAPRGAVLVGRTAIASKSLCSTTPLHSDGAR RPEDLQISANEKLPLSVEAATDAQPQGEPVVEIISKDVSSTSVLVELEED VENGREGTVESTGIELKEPLEESEVGGTQPSDGSHRDPKGFSSSLNNLLQ KGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRI SCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSY NYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQR AFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKY VSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFR GGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGI MREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESV EGSEKSLEEEEERLEASATVAEITGADSTDATDAMSKEDDPLHHDEVEAA GQDLSTPKLETEVTESYRNNPKNIEYDDVSKEYIRTRLRPSTVGIEELNC VISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGG MRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVL PSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ QQRDEWKGEAVTSAGETNSDMPDNDVAIDSERPENASNSQAINENAEEVA KQ* back to topmRNA from alignment at tig00000010_pilon:515541..517949+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2409bp|location=Sequence derived from alignment at tig00000010_pilon:515541..517949+ (Gracilaria chilensis NLEC103_M9 male) ATGCGTACCTACGTCGGCAGAACAGCTCTTCGTGGCGCTACACAGCTTCT
TTCTGGCGGCGCCCCTCGCGGCGCAGTTTTGGTTGGTCGCACTGCCATTG
CATCAAAATCACTATGTTCCACCACCCCGCTTCACAGCGATGGAGCTCGA
AGACCAGAAGACTTGCAAATATCTGCGAACGAGAAGCTGCCGCTTTCTGT
GGAGGCTGCTACGGACGCTCAACCCCAAGGTGAGCCTGTTGTCGAGATTA
TCTCGAAGGATGTATCTTCTACTTCTGTTCTGGTCGAACTTGAAGAAGAT
GTTGAAAATGGAAGAGAAGGGACGGTTGAATCTACTGGTATAGAACTAAA
AGAACCGCTAGAAGAATCAGAGGTTGGGGGGACTCAACCCTCTGACGGAT
CACATCGTGATCCAAAAGGCTTTTCTTCGTCCCTCAATAATTTGCTACAG
AAAGGCGCAGTTCGCACAGCTTTATGGCAGTTTGCGAATGCCTTGAAGAC
CTCAGATCGCTCAAAGGTCGACAAAGATGCAATAAGTCTAATGATCCCTG
TTCTCGGGAGAAGTGGCTGGTCCCCTACATCTCTCGAAACGCTTAGAATC
TCCTGTGAAAGGCAGTATGAGCTAGGAAGTGGACTGTACAATTGTGGTTT
ACACGCAGTGTCACGATCAGGTGATACAAAGTCAATGAGAGAGATCCTAA
CTGCAATGTGGACTCTTCCTAAAGATTCTCAACCGAATGCAACTTCGTAC
AACTATTTGATTGGTGCGTATATGTACCGCGGACAGGTCGACGAGGCCTT
CAATGTACTTAACGAAATGAAGGACCTTCTCATACACCCCACTTTTGCAA
CGTACCATTCATTAATTACTGGTTGTCTTCGACGCCGCGATTCTCAAAGA
GCGTTTTCAACTCTGCTGGCTGTCGAAAAGCAGCGTTTTGATGTGAGTGC
AATGACGGTCGCCCAAGTGCTTGTCAGCGCGTCAAACAATGATGACTTTG
ACAACGTCAGAGTTCTCTTGGGCAAATACGAATCGGCTCTTCCGAAATAC
GTTTCAGAAGTCCACCGCATCGCGGAGTCACGCCACATGTACCGCATCGG
TAAACACACTCGAACCTCCAAAGAAGAAAGAGCTGCCATGAGAGGCACAC
CCAAATTGGAAATCGGTGCAATATCTGCCGTTCTCCATTGTGCGTTCAGA
GGAGGGCTTCCTGATGTTGCATTGCATGCATGGCAGATTTTGGAAAAAAC
GTATCCAGACTTTGAACCACCTTCCTCGCTTTGGTACTGTTTGATCGGTG
CATTTTCTGGTGGTGGCGACTTCTCGACCGCTATAGATTTGGTTGGAATA
ATGCGAGAGAAGGGTATCAATCCTTCCTTGCGGGATTTGGACATGGCGTT
GACTCGTCCGATGGCATCAGATATAGAACAAGTTGATACTCAGTACTATA
GATTGGTTGACAGACTTGAGGGTAAAGTGCACAATGAAGAGGAATCTGTG
GAAGGGAGTGAGAAGAGTCTCGAAGAAGAGGAAGAAAGGCTCGAGGCTAG
TGCGACTGTCGCCGAAATAACTGGCGCTGATAGCACCGACGCCACTGACG
CGATGAGCAAGGAGGACGATCCCCTTCATCATGACGAAGTAGAAGCCGCA
GGTCAAGATCTGAGCACGCCGAAGCTAGAAACAGAAGTTACAGAATCTTA
CAGAAACAATCCCAAGAACATAGAGTATGATGACGTCTCTAAGGAATACA
TTAGGACAAGATTGAGACCGAGTACTGTTGGTATTGAGGAACTCAACTGT
GTGATTTCCGCTTGTTCAACGGCCCAAGATCTTGAGAGAGCGTTTCAAAC
GTACGACGAGGTGGAATCTCGATTTCAATTGGAAAAGAACATTGATACCT
TCAACGCGTTGCTAGAAGGCTGTGTTCAAACAAGGCATATCCGTGGTGGC
ATGAGAGTTTTGCAGGAGATGGAAAGCCAGGGATTCAATTTGAGTGGCCA
AACGCTGCACTTGGCGGTACGTTTGATGATCCGAGGGGGACGAAGTGAGT
CAACATTGCACATGGTTGAAGAAGCTCGGCAGAATGGGGATTACGTGCTA
CCGTCTACGTACCAGATGTTGCTGAGACACTACCTAAGAAGTGACGCGAT
TGAGCGAGCTCACAGAATGATGGAACTGGGGAAGGAAGCGGGTCTCTCTG
AAAGGGCTTTGACTGGACGACTTCCTTTCCAGTCATTTGATCAACTGCAA
CAGCAGAGAGACGAATGGAAAGGTGAAGCAGTTACGAGCGCTGGTGAGAC
GAACAGCGATATGCCAGACAATGATGTGGCGATTGATAGTGAACGTCCTG
AAAATGCTAGTAATAGTCAGGCGATTAATGAAAACGCGGAAGAAGTTGCA
AAGCAGTAA back to topCoding sequence (CDS) from alignment at tig00000010_pilon:515541..517949+ >Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2409bp|location=Sequence derived from alignment at tig00000010_pilon:515541..517949+ (Gracilaria chilensis NLEC103_M9 male) ATGCGTACCTACGTCGGCAGAACAGCTCTTCGTGGCGCTACACAGCTTCT TTCTGGCGGCGCCCCTCGCGGCGCAGTTTTGGTTGGTCGCACTGCCATTG CATCAAAATCACTATGTTCCACCACCCCGCTTCACAGCGATGGAGCTCGA AGACCAGAAGACTTGCAAATATCTGCGAACGAGAAGCTGCCGCTTTCTGT GGAGGCTGCTACGGACGCTCAACCCCAAGGTGAGCCTGTTGTCGAGATTA TCTCGAAGGATGTATCTTCTACTTCTGTTCTGGTCGAACTTGAAGAAGAT GTTGAAAATGGAAGAGAAGGGACGGTTGAATCTACTGGTATAGAACTAAA AGAACCGCTAGAAGAATCAGAGGTTGGGGGGACTCAACCCTCTGACGGAT CACATCGTGATCCAAAAGGCTTTTCTTCGTCCCTCAATAATTTGCTACAG AAAGGCGCAGTTCGCACAGCTTTATGGCAGTTTGCGAATGCCTTGAAGAC CTCAGATCGCTCAAAGGTCGACAAAGATGCAATAAGTCTAATGATCCCTG TTCTCGGGAGAAGTGGCTGGTCCCCTACATCTCTCGAAACGCTTAGAATC TCCTGTGAAAGGCAGTATGAGCTAGGAAGTGGACTGTACAATTGTGGTTT ACACGCAGTGTCACGATCAGGTGATACAAAGTCAATGAGAGAGATCCTAA CTGCAATGTGGACTCTTCCTAAAGATTCTCAACCGAATGCAACTTCGTAC AACTATTTGATTGGTGCGTATATGTACCGCGGACAGGTCGACGAGGCCTT CAATGTACTTAACGAAATGAAGGACCTTCTCATACACCCCACTTTTGCAA CGTACCATTCATTAATTACTGGTTGTCTTCGACGCCGCGATTCTCAAAGA GCGTTTTCAACTCTGCTGGCTGTCGAAAAGCAGCGTTTTGATGTGAGTGC AATGACGGTCGCCCAAGTGCTTGTCAGCGCGTCAAACAATGATGACTTTG ACAACGTCAGAGTTCTCTTGGGCAAATACGAATCGGCTCTTCCGAAATAC GTTTCAGAAGTCCACCGCATCGCGGAGTCACGCCACATGTACCGCATCGG TAAACACACTCGAACCTCCAAAGAAGAAAGAGCTGCCATGAGAGGCACAC CCAAATTGGAAATCGGTGCAATATCTGCCGTTCTCCATTGTGCGTTCAGA GGAGGGCTTCCTGATGTTGCATTGCATGCATGGCAGATTTTGGAAAAAAC GTATCCAGACTTTGAACCACCTTCCTCGCTTTGGTACTGTTTGATCGGTG CATTTTCTGGTGGTGGCGACTTCTCGACCGCTATAGATTTGGTTGGAATA ATGCGAGAGAAGGGTATCAATCCTTCCTTGCGGGATTTGGACATGGCGTT GACTCGTCCGATGGCATCAGATATAGAACAAGTTGATACTCAGTACTATA GATTGGTTGACAGACTTGAGGGTAAAGTGCACAATGAAGAGGAATCTGTG GAAGGGAGTGAGAAGAGTCTCGAAGAAGAGGAAGAAAGGCTCGAGGCTAG TGCGACTGTCGCCGAAATAACTGGCGCTGATAGCACCGACGCCACTGACG CGATGAGCAAGGAGGACGATCCCCTTCATCATGACGAAGTAGAAGCCGCA GGTCAAGATCTGAGCACGCCGAAGCTAGAAACAGAAGTTACAGAATCTTA CAGAAACAATCCCAAGAACATAGAGTATGATGACGTCTCTAAGGAATACA TTAGGACAAGATTGAGACCGAGTACTGTTGGTATTGAGGAACTCAACTGT GTGATTTCCGCTTGTTCAACGGCCCAAGATCTTGAGAGAGCGTTTCAAAC GTACGACGAGGTGGAATCTCGATTTCAATTGGAAAAGAACATTGATACCT TCAACGCGTTGCTAGAAGGCTGTGTTCAAACAAGGCATATCCGTGGTGGC ATGAGAGTTTTGCAGGAGATGGAAAGCCAGGGATTCAATTTGAGTGGCCA AACGCTGCACTTGGCGGTACGTTTGATGATCCGAGGGGGACGAAGTGAGT CAACATTGCACATGGTTGAAGAAGCTCGGCAGAATGGGGATTACGTGCTA CCGTCTACGTACCAGATGTTGCTGAGACACTACCTAAGAAGTGACGCGAT TGAGCGAGCTCACAGAATGATGGAACTGGGGAAGGAAGCGGGTCTCTCTG AAAGGGCTTTGACTGGACGACTTCCTTTCCAGTCATTTGATCAACTGCAA CAGCAGAGAGACGAATGGAAAGGTGAAGCAGTTACGAGCGCTGGTGAGAC GAACAGCGATATGCCAGACAATGATGTGGCGATTGATAGTGAACGTCCTG AAAATGCTAGTAATAGTCAGGCGATTAATGAAAACGCGGAAGAAGTTGCA AAGCAGTAA back to top
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