Gchil3809.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3809.t1
Unique NameGchil3809.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length803
Homology
BLAST of Gchil3809.t1 vs. uniprot
Match: A0A2V3J5Z9_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5Z9_9FLOR)

HSP 1 Score: 790 bits (2041), Expect = 3.170e-276
Identity = 415/779 (53.27%), Postives = 558/779 (71.63%), Query Frame = 0
Query:    1 MRTYVGRTALRGATQLLSGGAPRGAVLVGRTAIASKSLCSTTPLHSDGARRPEDLQISANEKLPLSVEAATDAQPQGEPVVEIISKD-VSSTSVLVELEEDVENGREGTVESTGIELKEPLEESEVGGTQPSDGSHRDPKGFSSSLNNLLQKGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRISCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSYNYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQRAFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKYVSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFRGGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGIMREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESVEGSEKSXXXXXXXLEASATVAEITGADSTDATDAMSKEDDPLHHDEVEAAGQDLSTPKLETEVTESYRNNPKNIEYDDVSKEYIRTRLRPSTVGIEELNCVISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGGMRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVLPSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ-QQRDEWKGEAVTSAGE-TNSDMPDNDV 776
            MR+ VGR ALRGATQLLSGGA R  V+  R+AIASK+LC+   + SD  RR +D+Q+SA+EKLP SV A      Q EPV+EIIS++ V++ S L   +       + +     ++ ++ + ++ V            PK F+  L +LL+ G  RTALWQ++NA+K   RS ++   I +M+P+LGRSGW+P++L+TLR++ ER+Y LG+G+YNCGLHA+SRS D  S+ +I++AMW L KDS PNAT+YNYLIGAYMYRG VD AF+VLNEMK  LI+PTFATYH+LI GCLRRRDSQRA+STLLAVE+QRFDVSAMT+AQV+V+++NNDDFDNVR LL K+E+ALP+Y +EVHR+AE R +YR+    RT+KEER  MRG+PKLEIGAISAVLHCAFRGG+PD+A+ AW ++E+TYPDFEPP+S WYC+IGAF+G GDF  A+D++G MREKG++ +L+DL+MAL R +A DI Q+D QYYRLVDRLEGK   +    E SE         L A + V   TG ++  + + ++ E D     EVE + +D +    E +       + + +  D    E +R + RP+TVG+EELNC+I+ACSTA DLERAFQTYDEV SRF LEKN DTFNALLEGC+Q++HI+GG+ +L+EM +  F + G TLHLA RL++RGG+ +  L  +  A  NGD VLPSTYQM++RH+LR   ++RA R++ELG+  G  E+ LTGRL ++  + L  ++RD    E   +A E +N +  D++V
Sbjct:    1 MRSSVGRFALRGATQLLSGGASRSTVVATRSAIASKALCTAPTIQSDATRRQDDIQLSASEKLP-SVAA------QQEPVIEIISEENVAAASPLSNEQPGEAVQPDPSASQHAVKEQQQIVDAPV-----------TPKEFADRLGSLLRSGNPRTALWQYSNAMKMPGRSMINDIVIKIMLPILGRSGWAPSALDTLRLAIEREYNLGTGMYNCGLHAISRSADVMSVTDIISAMWKLEKDSHPNATTYNYLIGAYMYRGSVDGAFDVLNEMKKHLIYPTFATYHALIVGCLRRRDSQRAYSTLLAVERQRFDVSAMTIAQVMVASANNDDFDNVRHLLNKFETALPRYATEVHRMAEVRDVYRLNVQERTTKEEREVMRGSPKLEIGAISAVLHCAFRGGVPDIAMRAWALMEETYPDFEPPASFWYCMIGAFTGSGDFGAAMDVLGAMREKGVHSTLKDLEMALIRSLAGDISQIDEQYYRLVDRLEGKPPPKHSENENSEAGAREQEEDLAAESAV---TGIEAAGSENIVTGERDTQPPSEVEVSAEDAT----EEDGDGKEATSSEVLGRDAHHLEMMRDKWRPTTVGLEELNCIIAACSTALDLERAFQTYDEVGSRFGLEKNEDTFNALLEGCIQSKHIQGGLAILEEMATNNFRMGGHTLHLACRLLVRGGQPDRVLERISTALDNGDTVLPSTYQMMVRHFLRGSDVKRARRVVELGRMGGYEEKTLTGRLEYEMVNLLHGRKRDARHQETAPAASELSNEEGRDSEV 754          
BLAST of Gchil3809.t1 vs. uniprot
Match: R7QHK3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHK3_CHOCR)

HSP 1 Score: 609 bits (1570), Expect = 2.780e-206
Identity = 323/633 (51.03%), Postives = 439/633 (69.35%), Query Frame = 0
Query:  136 RDPKGFSSSLNNLLQKGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRISCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSYNYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQRAFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKYVSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFRGGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGIMREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESVEGSEKSXXXXXXX-------LEASATVA----EITGADSTDATDAMSKEDDPLHHDEVEAAGQDLSTPKLETEVTESYRNNPKNIEYDDV-------SKEYIRTRLRPSTVGIEELNCVISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGGMRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVLPSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ 750
            + P      + +LL + A R+AL+ +  + KT     +D + + +M+PVLGR+ WS TS +T+ ++ ER Y LG GL NCGLHA++R+G T+ + E L  MW +P +S+PNATSYNYLIGA++Y G VD AF VLN+MK  LI+PTFATYH+LITGCLRRRD +RAF TL+AVEKQRFD+SAMTVAQVLV+++ NDD+D+V  LL K+E +LP+Y +E+HRIAE R +Y++    RTSK +R+A+RG PK EIGAIS VLHCAFRGG  D+A  AW +LE+ YP+FE P   +YCLIGA++G GDFS AID+VG MREKG+ PS+RDL+MAL RP+A ++  +D Q+YRL DR EGK  +   S   + ++XXXXXXX       L+ ++TV     + T  D T+ T+   +++DP+   E    G +++ P  E+         P     D +       S   I  +  PSTVGIEE+NC+I ACS + DL+RAFQT+DEVE+RF LE+NIDT+NALLEGCVQTR + GGMRVLQE+ES G +++G TLHLA RLM+R G+SE  L ++ +A   GD +L  TYQM+LRH +R + +  A ++ + G+EAG   + LTGR    +  +LQ
Sbjct:   31 KTPPEMLKQMKDLLARNATRSALYHYGASFKTDGVPSLDAEVMRVMLPVLGRNSWSATSADTIDLAIERGYSLGVGLMNCGLHAMARAGMTREIEEALARMWNMPPESRPNATSYNYLIGAHIYAGNVDSAFEVLNDMKKHLIYPTFATYHALITGCLRRRDPRRAFQTLMAVEKQRFDISAMTVAQVLVASAGNDDYDHVDQLLIKFEESLPRYGNELHRIAEFRGLYQMKDAGRTSKSDRSALRGEPKPEIGAISEVLHCAFRGGRVDIASRAWILLEEHYPEFEIPLPFYYCLIGAYAGAGDFSQAIDIVGAMREKGMKPSMRDLEMALVRPLAYNVSIIDEQFYRLCDRKEGKETDSHSSKPAAAEAXXXXXXXVDEESAALDDTSTVTLDEQDRTATDGTEFTEDSGQQEDPVTSQE----GSEVAMPSPES---------PSVSLADAILSTSGLQSATSISAQFSPSTVGIEEINCIIGACSASLDLDRAFQTFDEVETRFGLERNIDTYNALLEGCVQTRRLSGGMRVLQEIESVGLSVAGHTLHLATRLMLRAGQSEDVLKLLTKAHSQGDSILLQTYQMVLRHLVRGNFMNEAVQLQQQGEEAGFEFQTLTGRFDLGTVRRLQ 650          
BLAST of Gchil3809.t1 vs. uniprot
Match: A0A7S0ZFT9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFT9_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 3.530e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:  593 VGIEELNCVISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGGMRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEA 692
            VGI+ELNC+I+ACS   D++RAF+T+DE++  F L+ N DTFNA+L GC+  RH      +  EME +      +T  L V +++R  +      +++E+
Sbjct:  307 VGIDELNCIIAACSNIPDMDRAFETFDELKKTFGLKPNADTFNAILLGCMIMRHYEAVGPLYMEMEQEQVEKDSETYRLLVLILLRSNQMNRVFRLLDES 406          
BLAST of Gchil3809.t1 vs. uniprot
Match: A0A388MD79_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MD79_CHABU)

HSP 1 Score: 75.5 bits (184), Expect = 2.810e-10
Identity = 35/134 (26.12%), Postives = 68/134 (50.75%), Query Frame = 0
Query:  593 VGIEELNCVISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGGMRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVLPSTYQMLLRHYLRSDAIERAHRMMEL 726
            V +  +NC+I+ CS   D++RAFQT++E+   F +  N+ T+NAL++GC +T+ I   +++ + +E+ G     Q+    +   +  G +  ++  +E     G      T   +LR   R+   +   R+  L
Sbjct:  624 VSLAAINCIIAGCSNVHDMDRAFQTFEEISRTFGMAPNVHTYNALIDGCAKTKQIAMAIQMFKRIEANGLAFDEQSFQFLIDAYVIDGNAPGSVEALESMMAAGFTPSRPTLVRVLRRCQRTGYAQGGDRVKRL 757          
BLAST of Gchil3809.t1 vs. uniprot
Match: A0A7S1TNF1_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNF1_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 9.580e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  577 DDVSKEYIRTRLRPSTVGIEELNCVISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRH 646
            D V  +  + +     VGI+ELNCVI+AC+   D ER F+T+ E+++ F ++ N DT+NALL  C+ T H
Sbjct:  211 DHVYFDLAQKKASGGVVGIDELNCVITACAQLADAERTFETFQELKNTFDVKPNTDTYNALLLSCLNTEH 280          
BLAST of Gchil3809.t1 vs. uniprot
Match: A0A7S2RU43_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RU43_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.060e-7
Identity = 34/121 (28.10%), Postives = 61/121 (50.41%), Query Frame = 0
Query:  593 VGIEELNCVISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRG--GMRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVLPSTYQMLLRHY 711
            VG+  LN +I AC+  Q L+RAF T+ E++  F L+ ++D++NALL  C   R+ +G   + + ++M+        ++ H  +  + R G  E     +E     G  V P    + + H+
Sbjct:    8 VGVASLNAIILACAELQHLDRAFATFQEIKDTFDLDHDVDSYNALLSACALPRNPQGQAALSIFEDMQGS-LTPDERSYHYLLLALARSGMDEELQTALERLDYEGS-VAPRRALIEIGHF 126          
The following BLAST results are available for this feature:
BLAST of Gchil3809.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J5Z9_9FLOR3.170e-27653.27Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7QHK3_CHOCR2.780e-20651.03Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZFT9_9RHOD3.530e-1439.00Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A388MD79_CHABU2.810e-1026.12Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S1TNF1_9RHOD9.580e-942.86Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S2RU43_9STRA3.060e-728.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 486..513
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 748..774
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 781..796
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 748..802
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 130..459
coord: 421..731
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 573..775
e-value: 1.9E-20
score: 75.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 141..390
e-value: 5.0E-23
score: 84.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 428..456
e-value: 0.39
score: 11.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 245..293
e-value: 2.4E-11
score: 43.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 249..275
e-value: 1.5E-4
score: 19.7
coord: 633..663
e-value: 5.1E-5
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..280
score: 10.588674
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 630..664
score: 10.117337
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 8.780059
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 596..723
e-value: 2.0E-6
score: 27.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:515541..517949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3809.t1Gchil3809.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000010_pilon 515541..517949 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3809.t1 ID=Gchil3809.t1|Name=Gchil3809.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=803bp
MRTYVGRTALRGATQLLSGGAPRGAVLVGRTAIASKSLCSTTPLHSDGAR
RPEDLQISANEKLPLSVEAATDAQPQGEPVVEIISKDVSSTSVLVELEED
VENGREGTVESTGIELKEPLEESEVGGTQPSDGSHRDPKGFSSSLNNLLQ
KGAVRTALWQFANALKTSDRSKVDKDAISLMIPVLGRSGWSPTSLETLRI
SCERQYELGSGLYNCGLHAVSRSGDTKSMREILTAMWTLPKDSQPNATSY
NYLIGAYMYRGQVDEAFNVLNEMKDLLIHPTFATYHSLITGCLRRRDSQR
AFSTLLAVEKQRFDVSAMTVAQVLVSASNNDDFDNVRVLLGKYESALPKY
VSEVHRIAESRHMYRIGKHTRTSKEERAAMRGTPKLEIGAISAVLHCAFR
GGLPDVALHAWQILEKTYPDFEPPSSLWYCLIGAFSGGGDFSTAIDLVGI
MREKGINPSLRDLDMALTRPMASDIEQVDTQYYRLVDRLEGKVHNEEESV
EGSEKSLEEEEERLEASATVAEITGADSTDATDAMSKEDDPLHHDEVEAA
GQDLSTPKLETEVTESYRNNPKNIEYDDVSKEYIRTRLRPSTVGIEELNC
VISACSTAQDLERAFQTYDEVESRFQLEKNIDTFNALLEGCVQTRHIRGG
MRVLQEMESQGFNLSGQTLHLAVRLMIRGGRSESTLHMVEEARQNGDYVL
PSTYQMLLRHYLRSDAIERAHRMMELGKEAGLSERALTGRLPFQSFDQLQ
QQRDEWKGEAVTSAGETNSDMPDNDVAIDSERPENASNSQAINENAEEVA
KQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long