Gchil6861.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6861.t1
Unique NameGchil6861.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length302
Homology
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A2V3IH59_9FLOR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH59_9FLOR)

HSP 1 Score: 269 bits (688), Expect = 5.570e-86
Identity = 143/263 (54.37%), Postives = 181/263 (68.82%), Query Frame = 0
Query:   39 CEPNRDHVLLGAFAMDCSPEPRLYPSGKAKAETRVFVDSLLQQGAVIQLPYEEQKHLRARRFRNGDQLVLFNSAGQTAAAIYQNERVVILELR-SSKHTDHSFSNLVAIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQSMRTSTPEVSLIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL 300
            C   R   + G  A+D S +   YP+GK K++TRVF+D   + G VI LP EE KHLRA RF+NGD+ VLFN AG +A A  QN+  V+LE R  + H    FS L+A+PK  SR+D +VEKLTELGAD I FM TKRTI T PS  KL+RW RIAI+ASKQS+R   PE++ IDF +AL+    HPL  LLC  G+ +LSSS Q  ++R++ AL++VGPEGGFE  E   L +AGAI VSLG NRLR ETAAI S +++ Q+
Sbjct:   37 CGTRRMKAIHGFRAVDSSSDSLAYPTGKRKSDTRVFLDIGFRTGEVISLPQEEFKHLRALRFKNGDEFVLFNGAGDSATAALQNKTAVVLEARYKTTHLKAQFSALIAVPKTGSRSDSIVEKLTELGADCITFMRTKRTIATMPSANKLERWNRIAIAASKQSLRDVPPEIAAIDFSSALETVVLHPLPFLLCSMGDLLLSSSCQTRIRREKQALVIVGPEGGFEMSEARQLTEAGAIPVSLGSNRLRIETAAIVSVALISQI 299          
BLAST of Gchil6861.t1 vs. uniprot
Match: R7QLU6_CHOCR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLU6_CHOCR)

HSP 1 Score: 179 bits (454), Expect = 6.180e-51
Identity = 103/241 (42.74%), Postives = 138/241 (57.26%), Query Frame = 0
Query:   62 YPSGKAKAETRVFVDSLLQQGAVIQLPYEEQKHLRARRFRNGDQLVLFNSAGQTAAAIYQNER-VVILELRSSKHTDHSFSNLVAIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQSMRTSTPEVSLI-DFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL 300
            Y  GKA + TRVF+      GA   LP EE  HLRARR R+G Q+ LF+  G  A A   +E  V +L   S++    S   ++A+PK PSRAD +VEKL ELG   + +  T+R I   P+  +L RW R+A++ASKQSMRT  P V    ++   L++ +Q  L LLL   G  IL     D V+  R   +LVGPEGGF   E   L+  GA+ + LG NRLR ETAA  + ++L Q+
Sbjct:   37 YTRGKATSSTRVFLSGPFHPGAEYTLPPEEAAHLRARRIRHGSQITLFDGTGAFATATLDSESSVTVLTTTSAEARSKSICAIIALPKSPSRADGIVEKLVELGVHRLVWARTERVIAAAPNQARLARWARLAVAASKQSMRTDVPIVQTTSNWGELLELASQSDLVLLLSAAGTPILGQRCTDAVRAARNIAVLVGPEGGFTDTEEEKLEAVGALKIGLGSNRLRVETAAFTAVAVLMQV 277          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A256XXZ7_9ARCH (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Candidatus Woesearchaeota TaxID=1801616 RepID=A0A256XXZ7_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 6.160e-28
Identity = 84/231 (36.36%), Postives = 123/231 (53.25%), Query Frame = 0
Query:   72 RVFVDSLLQQGAVIQLPYEEQKHLRARRFRNGDQLVLFNSAGQT----AAAIYQNERVVILELRSSKHTDHSFSNLVAIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQSMRTSTPEVSL-IDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASIL 297
            R+F D  L++  ++ L  EE +H+   R +  D++ LF+  G        ++ +  +V I+E    K    +     A PK   R+DWL EK TE+G D I  ++ KR+I T P   K++RWKRIA +AS QS R   PE+S  I+ + AL+ T      +++C K       +I  I   K   +LLVGPEGGF   E   LK+   +  SLG N LRTETA +  AS++
Sbjct:    4 RLFFDGKLKE--IVDLDKEESRHVNVLRLKKEDKVELFDGKGNIFKGKIESLGKTVKVKIIENTQEKKEKPTIELWTATPKG-ERSDWLTEKATEVGVDKIVPVIFKRSI-TIPKKNKIERWKRIAKTASAQSKRAFIPEISEPIELKKALQKTKGQ---IIVCTKQ----GKNITQIKTEKEKIILLVGPEGGFSEEELQLLKEKEKL--SLGKNTLRTETAGVIGASVV 221          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A7J7ILD3_9RHOD (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILD3_9RHOD)

HSP 1 Score: 118 bits (295), Expect = 1.880e-27
Identity = 91/274 (33.21%), Postives = 130/274 (47.45%), Query Frame = 0
Query:   72 RVFVDS----LLQQGAVIQLPYEEQKHLRARRFRNGDQLVLFNSAGQTAAAIYQNERVVILELR-----------SSKHTDHSFSNLVAIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPS--PRKLQRWKRIAISASKQSMRTS---------------------TPEVSLIDFEAALKVTAQHPLALLLC-PKGEHILSS---------SIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASIL 297
            R+FV S     ++    ++LP  EQ+H+R+RR ++G  + LF+ +G+ AA         +  LR            S     S S +VA PK   RADW++EKL ELG      +  +R  V  P    R   RW+ ++I+A+KQS+R +                     +P V+L D    + VTA   +  LL  P     L+S         S  +     R  + +VGPEGG  + E + L  AGAIGVSLG  RLRTETAA+A A+ L
Sbjct:   41 RLFVPSSELDAVECAGSLELPPNEQQHVRSRRLKDGTMVELFDGSGRLAAGQLACRGRAVEALRWLPTDTGATEVPSMQQVLSVSCVVATPKSTQRADWMIEKLNELGVSGYRHLACRRVEVDAPQIEKRAAVRWQHVSIAAAKQSLRRTLLDCGLADANATVTRMAHWFPSPVVTLEDLVRQMSVTASEDVVFLLAKPDARRTLASWRRAHSPVLSPSERWTSPRQVVCVVGPEGGLSSDEEDALLQAGAIGVSLGAQRLRTETAAVALAAAL 314          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A661GUJ5_9GAMM (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GUJ5_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 2.670e-25
Identity = 82/242 (33.88%), Postives = 120/242 (49.59%), Query Frame = 0
Query:   72 RVFVDSLLQQGAVIQLPYEEQKHL-RARRFRNGDQLVLFNSAGQTAAAIYQN----ERVVILELRSSKHTDHSFSNLVAIP-KKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQR---WKRIAISASKQSMRTSTPEVS----LIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL 300
            RV++D  LQ GA + L      +L    R R  D L++FN +G    A  Q+    +  +I+   S          ++AI   +  R DW+++K  ELG + I  + T+R  V     R L++   W++IAISA +QS R   P +     L++F  A    A   L L+L P+ E  LSS++ D     +  +LL GPEGGF   E    +  G I V LG   LRTETA +A+ SI+  L
Sbjct:    5 RVYLDQALQSGAELALDKAAAHYLVSVLRLRADDALIVFNGSGGEYTATLQSATNKQATIIVGSHSPGVAPSPVRIVLAIGLSRGERMDWVIQKAVELGVNEIIPLFTERCEVKLKGERALKKRGHWQQIAISACEQSQRNDVPTIKPAQPLMEFLTASAPPANSDLKLILDPRAEQSLSSTLLDKGSSTKTIVLLSGPEGGFSDGEVEQAQQKGVISVGLGPRVLRTETAPLAALSIVQAL 246          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A1G0E280_9GAMM (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Gammaproteobacteria bacterium GWE2_37_16 TaxID=1798261 RepID=A0A1G0E280_9GAMM)

HSP 1 Score: 108 bits (271), Expect = 1.380e-24
Identity = 75/234 (32.05%), Postives = 118/234 (50.43%), Query Frame = 0
Query:   72 RVFVDSLLQQGAVIQLPYEEQKHLRARRFRNGDQLVLFNSAGQTAAAIYQNE-----RVVILELRSSKHTDHSFSNLVAIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPR---KLQRWKRIAISASKQSMRTSTPEVSLIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASIL 297
            R+++++ L+ GA I L  +  +HL   R + GD L+LFN  G+   AI Q +     R+ +++    K       N+V    +  + D++++K TELGA +I  ++T+   V     R   +L  W+ +AISA +QS R   P++       A     Q  L L+L PK    L++  ++   +     LLVGPEGGF   E    ++     + LG   LRTETAA+  ASIL
Sbjct:    5 RIYIETDLKTGAEINLTKDASQHLHVLRLKCGDSLLLFNGNGEEYTAILQQKNKNCARIQLIKCFKPKVESSLKINIVQGLARGEKMDFIIQKATELGAQTITPLITEYCNVNLSDERLEKRLLHWQAVAISAVEQSGRCCIPKIQPAQKMIAWLKQPQEGLTLILNPKATSGLNTLFKNTKNQPNIINLLVGPEGGFSAEEIKLAEEFSWQSIRLGPRILRTETAALVMASIL 238          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A7X3WMA6_9BACT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3WMA6_9BACT)

HSP 1 Score: 106 bits (265), Expect = 8.010e-24
Identity = 78/236 (33.05%), Postives = 121/236 (51.27%), Query Frame = 0
Query:   74 FVDSLLQQGAVIQLPYEEQKHLR-ARRFRNGDQLVLFNSAGQTAAAIYQNERVVILELRSSKHTDHSFSNLV-----AIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQSMRTSTPEVSLI-DFEAALKVTAQHPLALLLCPKGE-HILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQLF 301
            +V S+      +++   E  HLR   R +  D + + +  G   +A      V     + ++ T +     V      IPK   + + +++K TELG   I  M+T+RT+   PS ++L+RW RI ISA+KQ      PE+  + DF+A +   A   L+L+L  K + H +S+  +     +  AL  VGPEGGF   E ND  + G I VS+G N LRTETAAIA+ +I+   +
Sbjct:    5 YVPSIRPNADTVEISDLEHHHLRNVLRLKKNDIIQIIDGKGGVYSAKVNRISVESTTTQITEQTYYPKKTPVLMLFQGIPKN-DKMELILQKTTELGVSQIVPMITERTL-QKPSEKRLKRWNRIVISATKQCKSLWLPELQQVRDFDACINTIATETLSLILWEKEKKHHISNVFKSNANPESLALF-VGPEGGFTENEVNDAVNKGCIPVSIGSNTLRTETAAIAATAIVAYQY 237          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A7V4HBP2_9BACT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V4HBP2_9BACT)

HSP 1 Score: 106 bits (264), Expect = 9.990e-24
Identity = 76/216 (35.19%), Postives = 122/216 (56.48%), Query Frame = 0
Query:   90 EEQKHL-RARRFRNGDQLVLFNSAGQTAAAIYQ--NERVVILELRSSKHTDHSFSNL-----VAIPKKPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQSMRTSTPEV-SLIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRK-RCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASAS 295
            +E KHL    R + GD + + +  G     I +  + +  I E+ + K++ H+  +L     + I K PS+ D+LVEK+TE+G ++I  ++T RTI   PS  K+ RW+++A+SA KQ  R+  P++  LI     L+    + L L+   +G  I  + I+  +K   + A++L+GPEGGFE  E      +G + VS G  RLRTETAAI +A+
Sbjct:   21 QEFKHLTHVMRKKEGDFIRVVDGKGNAYDVILKEISAKKAIGEI-TGKYSHHNEPSLSVTLGIGILKNPSKFDFLVEKVTEIGVNNIIPLITARTI---PSHAKIDRWQKLALSAMKQCGRSYLPQIHELIKLPEFLQFYTDYDLKLVAHQEGNEI--NKIESFLKSSVKSAVMLIGPEGGFEENEIERCIQSGFVKVSFGCRRLRTETAAIVAAT 230          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A2R4XIN6_9BURK (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Orrella marina TaxID=2163011 RepID=A0A2R4XIN6_9BURK)

HSP 1 Score: 106 bits (264), Expect = 1.650e-23
Identity = 74/239 (30.96%), Postives = 122/239 (51.05%), Query Frame = 0
Query:   72 RVFVDSLLQQGAVIQLPYEEQKHLRARRFRNGDQLVLFNSAGQTAAAIYQ--NERVVILELRSSKHTDHSFSN---LVAIPKKPSRADWLVEKLTELGADSINFMVTKRTIV---TDPSPRKLQRWKRIAISASKQSMRTSTPEVSLI-DFEAALKVTAQHP-LALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL 300
            R F D+ L+    I+LP +   H+R RR R G+ +VLF+  G+ A A     ++ +   ++ SS       S    LV       + DW++EK TELG   +  +   R++V   +D + ++    +R+  SAS+Q  R    ++ +    + A++     P LA +L      + S S+ + V+R +   + +GPEGG+   E N+L  AGA+ +SLG   LRTETA +A+ S L  L
Sbjct:    9 RFFCDTRLEHCDTIELPDDVAHHVRVRRLREGEPIVLFDGKGRQAEARISVISKSLCQAKIESSSLVSREISGKITLVQAMASQDKMDWIIEKATELGVTRMIAVQASRSVVKLNSDRASKRAAHGRRLIESASEQCGRNHLMQLLMPHSLKQAIEACKDQPMLACVLSEAALPLTSESLLETVRRHQGCSVFIGPEGGWAPDEQNELIKAGAVAISLGRRVLRTETAGLAAVSALTAL 247          
BLAST of Gchil6861.t1 vs. uniprot
Match: A0A1Q2HN83_9BACT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Sedimentisphaera cyanobacteriorum TaxID=1940790 RepID=A0A1Q2HN83_9BACT)

HSP 1 Score: 104 bits (259), Expect = 5.640e-23
Identity = 75/220 (34.09%), Postives = 108/220 (49.09%), Query Frame = 0
Query:   87 LPYEEQKHLRARRFRNGDQLVLFNSAGQTAAAIYQNERVVILELR---SSKHTDHSFSNLVAIPK--KPSRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQSMRTSTPEVSLID-FEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRCALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL 300
            L   E +HL A R + GDQ+ +F+  G +A AI +     I +L    + K T      +  I    K  R DWL+ K  ELGAD I   + +RT+ T      L+R+++++ISA KQS     P +   D FE  LK  +    ++ L         S ++  +       + +GPEGGF TRE   LKD+GA  +SL    LRTETAA+   S L  +
Sbjct:   15 LDKSEARHLAAFRIKEGDQIQIFDGKGTSALAIVKEITKTIAKLEILNTKKFTPRQNGKITLIVSIAKGQRFDWLISKAAELGADCIMPALFERTVKTASGKNLLERYRKLSISACKQSGNLFLPRIYPPDRFEEHLKQLSD---SVFLSASLSDNARSLVEIDLDISANYAVFIGPEGGFTTREEQILKDSGAENISLTSTTLRTETAAVCCCSYLALM 231          
The following BLAST results are available for this feature:
BLAST of Gchil6861.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH59_9FLOR5.570e-8654.3716S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
R7QLU6_CHOCR6.180e-5142.7416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A256XXZ7_9ARCH6.160e-2836.3616S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
A0A7J7ILD3_9RHOD1.880e-2733.2116S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A661GUJ5_9GAMM2.670e-2533.88Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A1G0E280_9GAMM1.380e-2432.05Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A7X3WMA6_9BACT8.010e-2433.05Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A7V4HBP2_9BACT9.990e-2435.19Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2R4XIN6_9BURK1.650e-2330.96Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A1Q2HN83_9BACT5.640e-2334.09Ribosomal RNA small subunit methyltransferase E n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006700Ribosomal RNA small subunit methyltransferase ETIGRFAMTIGR00046TIGR00046coord: 73..298
e-value: 1.1E-32
score: 111.2
IPR006700Ribosomal RNA small subunit methyltransferase EPFAMPF04452Methyltrans_RNAcoord: 87..297
e-value: 5.9E-44
score: 150.1
IPR006700Ribosomal RNA small subunit methyltransferase EPANTHERPTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Ecoord: 72..297
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 140..301
e-value: 4.9E-42
score: 145.4
NoneNo IPR availableGENE3D2.40.240.20coord: 70..133
e-value: 9.2E-8
score: 33.9
NoneNo IPR availableCDDcd18084RsmE-likecoord: 143..297
e-value: 3.29764E-49
score: 159.249
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 144..299
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 72..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:441197..442102 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6861.t1Gchil6861.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 441197..442102 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6861.t1 ID=Gchil6861.t1|Name=Gchil6861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=302bp
MELKTPTNLARGCAWNSLCTGTGTGVRRIFFNAAPISKCEPNRDHVLLGA
FAMDCSPEPRLYPSGKAKAETRVFVDSLLQQGAVIQLPYEEQKHLRARRF
RNGDQLVLFNSAGQTAAAIYQNERVVILELRSSKHTDHSFSNLVAIPKKP
SRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQS
MRTSTPEVSLIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRC
ALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL
F*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006700rRNA_ssu_MeTrfase-E
IPR029026tRNA_m1G_MTases_N
IPR029028Alpha/beta_knot_MTases
IPR015947PUA-like_sf