Gchil6861.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6861.t1
Unique NameGchil6861.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:441197..442102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1347393.HG726020_gene1506
Preferred namersmE
PFAMsMethyltrans_RNA
Max annot lvl976|Bacteroidetes
KEGG koko:K09761
Evalue6.05e-22
EggNOG OGsCOG1385@1|root,COG1385@2|Bacteria,4NE2S@976|Bacteroidetes,2FKZG@200643|Bacteroidia,4AMW9@815|Bacteroidaceae
EC2.1.1.193
DescriptionSpecifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6861Gchil6861Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 441197..442102 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6861.t1.start1Gchil6861.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 441197..441199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6861.t1.CDS1Gchil6861.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 441197..442102 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6861.t1.exon1Gchil6861.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 441197..442102 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6861.t1.stop1Gchil6861.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 442100..442102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6861.t1Gchil6861.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 441197..442102 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6861.t1 ID=Gchil6861.t1|Name=Gchil6861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=302bp
MELKTPTNLARGCAWNSLCTGTGTGVRRIFFNAAPISKCEPNRDHVLLGA
FAMDCSPEPRLYPSGKAKAETRVFVDSLLQQGAVIQLPYEEQKHLRARRF
RNGDQLVLFNSAGQTAAAIYQNERVVILELRSSKHTDHSFSNLVAIPKKP
SRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQS
MRTSTPEVSLIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRC
ALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL
F*
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spliced messenger RNA

>Gchil6861.t1 ID=Gchil6861.t1|Name=Gchil6861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004376_pilon:441197..442102+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTGAAAACGCCTACCAACCTGGCGAGGGGATGCGCTTGGAATTC
TCTGTGTACTGGGACTGGGACTGGGGTAAGAAGAATTTTTTTCAATGCAG
CTCCAATTTCGAAGTGCGAGCCGAACCGAGACCATGTTTTGCTCGGGGCA
TTTGCCATGGATTGCTCCCCTGAACCAAGATTGTATCCAAGCGGTAAAGC
AAAAGCAGAAACACGAGTGTTCGTGGATTCTTTGCTGCAACAGGGAGCAG
TGATACAACTTCCGTACGAAGAACAGAAACATCTGCGCGCTCGTCGGTTC
AGAAATGGTGATCAGCTTGTTCTGTTTAACTCGGCGGGGCAAACTGCCGC
CGCTATTTATCAGAATGAAAGAGTTGTTATCCTCGAACTTCGCAGCTCAA
AACATACAGACCACAGCTTTTCGAACCTAGTCGCCATTCCGAAAAAGCCA
TCAAGAGCAGATTGGCTTGTAGAAAAGCTAACTGAACTTGGTGCAGATTC
TATCAATTTCATGGTCACAAAACGAACGATCGTGACAGATCCCTCCCCGC
GCAAGCTGCAGAGATGGAAACGTATAGCTATTTCAGCCTCAAAGCAGTCA
ATGCGAACATCAACCCCTGAAGTCTCTCTAATCGATTTTGAAGCCGCTCT
CAAAGTAACTGCTCAGCATCCGCTCGCATTGCTACTTTGTCCAAAAGGCG
AGCATATTCTATCAAGCTCTATTCAAGACATTGTCAAAAGAAAAAGATGC
GCGCTATTGCTTGTTGGGCCGGAAGGTGGATTTGAAACAAGAGAGACTAA
CGACCTAAAGGATGCTGGGGCAATCGGCGTGTCTCTCGGCGGAAATCGGC
TCAGAACTGAGACAGCTGCGATTGCTTCAGCTTCCATTTTATGTCAATTA
TTCTAA
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protein sequence of Gchil6861.t1

>Gchil6861.t1 ID=Gchil6861.t1|Name=Gchil6861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=302bp
MELKTPTNLARGCAWNSLCTGTGTGVRRIFFNAAPISKCEPNRDHVLLGA
FAMDCSPEPRLYPSGKAKAETRVFVDSLLQQGAVIQLPYEEQKHLRARRF
RNGDQLVLFNSAGQTAAAIYQNERVVILELRSSKHTDHSFSNLVAIPKKP
SRADWLVEKLTELGADSINFMVTKRTIVTDPSPRKLQRWKRIAISASKQS
MRTSTPEVSLIDFEAALKVTAQHPLALLLCPKGEHILSSSIQDIVKRKRC
ALLLVGPEGGFETRETNDLKDAGAIGVSLGGNRLRTETAAIASASILCQL
F*
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mRNA from alignment at tig00004376_pilon:441197..442102+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6861.t1 ID=Gchil6861.t1|Name=Gchil6861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004376_pilon:441197..442102+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTGAAAACGCCTACCAACCTGGCGAGGGGATGCGCTTGGAATTC
TCTGTGTACTGGGACTGGGACTGGGGTAAGAAGAATTTTTTTCAATGCAG
CTCCAATTTCGAAGTGCGAGCCGAACCGAGACCATGTTTTGCTCGGGGCA
TTTGCCATGGATTGCTCCCCTGAACCAAGATTGTATCCAAGCGGTAAAGC
AAAAGCAGAAACACGAGTGTTCGTGGATTCTTTGCTGCAACAGGGAGCAG
TGATACAACTTCCGTACGAAGAACAGAAACATCTGCGCGCTCGTCGGTTC
AGAAATGGTGATCAGCTTGTTCTGTTTAACTCGGCGGGGCAAACTGCCGC
CGCTATTTATCAGAATGAAAGAGTTGTTATCCTCGAACTTCGCAGCTCAA
AACATACAGACCACAGCTTTTCGAACCTAGTCGCCATTCCGAAAAAGCCA
TCAAGAGCAGATTGGCTTGTAGAAAAGCTAACTGAACTTGGTGCAGATTC
TATCAATTTCATGGTCACAAAACGAACGATCGTGACAGATCCCTCCCCGC
GCAAGCTGCAGAGATGGAAACGTATAGCTATTTCAGCCTCAAAGCAGTCA
ATGCGAACATCAACCCCTGAAGTCTCTCTAATCGATTTTGAAGCCGCTCT
CAAAGTAACTGCTCAGCATCCGCTCGCATTGCTACTTTGTCCAAAAGGCG
AGCATATTCTATCAAGCTCTATTCAAGACATTGTCAAAAGAAAAAGATGC
GCGCTATTGCTTGTTGGGCCGGAAGGTGGATTTGAAACAAGAGAGACTAA
CGACCTAAAGGATGCTGGGGCAATCGGCGTGTCTCTCGGCGGAAATCGGC
TCAGAACTGAGACAGCTGCGATTGCTTCAGCTTCCATTTTATGTCAATTA
TTCTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:441197..442102+

>Gchil6861.t1 ID=Gchil6861.t1|Name=Gchil6861.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00004376_pilon:441197..442102+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTGAAAACGCCTACCAACCTGGCGAGGGGATGCGCTTGGAATTC
TCTGTGTACTGGGACTGGGACTGGGGTAAGAAGAATTTTTTTCAATGCAG
CTCCAATTTCGAAGTGCGAGCCGAACCGAGACCATGTTTTGCTCGGGGCA
TTTGCCATGGATTGCTCCCCTGAACCAAGATTGTATCCAAGCGGTAAAGC
AAAAGCAGAAACACGAGTGTTCGTGGATTCTTTGCTGCAACAGGGAGCAG
TGATACAACTTCCGTACGAAGAACAGAAACATCTGCGCGCTCGTCGGTTC
AGAAATGGTGATCAGCTTGTTCTGTTTAACTCGGCGGGGCAAACTGCCGC
CGCTATTTATCAGAATGAAAGAGTTGTTATCCTCGAACTTCGCAGCTCAA
AACATACAGACCACAGCTTTTCGAACCTAGTCGCCATTCCGAAAAAGCCA
TCAAGAGCAGATTGGCTTGTAGAAAAGCTAACTGAACTTGGTGCAGATTC
TATCAATTTCATGGTCACAAAACGAACGATCGTGACAGATCCCTCCCCGC
GCAAGCTGCAGAGATGGAAACGTATAGCTATTTCAGCCTCAAAGCAGTCA
ATGCGAACATCAACCCCTGAAGTCTCTCTAATCGATTTTGAAGCCGCTCT
CAAAGTAACTGCTCAGCATCCGCTCGCATTGCTACTTTGTCCAAAAGGCG
AGCATATTCTATCAAGCTCTATTCAAGACATTGTCAAAAGAAAAAGATGC
GCGCTATTGCTTGTTGGGCCGGAAGGTGGATTTGAAACAAGAGAGACTAA
CGACCTAAAGGATGCTGGGGCAATCGGCGTGTCTCTCGGCGGAAATCGGC
TCAGAACTGAGACAGCTGCGATTGCTTCAGCTTCCATTTTATGTCAATTA
TTCTAA
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