Gchil6824.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6824.t1
Unique NameGchil6824.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length420
Homology
BLAST of Gchil6824.t1 vs. uniprot
Match: A0A2V3J3L9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3L9_9FLOR)

HSP 1 Score: 462 bits (1188), Expect = 1.610e-158
Identity = 249/420 (59.29%), Postives = 315/420 (75.00%), Query Frame = 0
Query:    1 MSASSHILGSSISGSIELLTLCSAGAYLVSAGILDRRLTRRLSKATKDMFIPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAFAFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMETPQCYEKSMGYASLFLTIVNIISWMTLYQYLRASPDNVVGTLAAEEDPLLQEEGTTGVVANGDGAAPEEDFDEQDG-FAEAVYRAFNSPIFLSMIAAVVIAITYPISNALLNHNGILRPVFLSIKILGNVVVPVNALVVGAEFYHS---CKEEDKRQNHVYQENEMFGNRVFVVILLWRLVVLPWLARFAYSTLNVSSQVHNPLLGIFGLVEFNNPTANTTVMMMSLVRKRLRRAGPQLSRDVVRTVLFQFLCTPVLLTLNTAAALHLQYS 416
            M++SS IL SS+SGS+ELLTLC+AGA LV   + D  +T +LS+A K++FIP LVF SILHT HSAIETL+TS +SI ALQQIWVP+ LAFLV G+ A FA+PIT++IA+ KQ++V+RA+F CL LGNANV+PLLVMQSLCDTFPPLM TP CY+KSMGYASLFLT++NIISW  LYQ+LR S D+       EE PLL + G    + +        D DE      +A+ R   S IFL+++AA+ IAI YP+ NA L+ +G+LRP  LSI ILGNVVVPVN+L+VGAE Y+S   C++ED+   ++  ++E FG+  F+VIL WRLV  PW+AR  Y  L + S++ +PLLGIFGLVEFNNPTANTTVM++S+V  RL R G QL  DV +TV +QFL TP+ LTLNTAAALHLQY+
Sbjct:    1 MASSSRILQSSLSGSVELLTLCAAGALLVHTQVFDADVTTQLSRAMKNLFIPALVFGSILHTAHSAIETLITSRDSI-ALQQIWVPVALAFLVFGMAAIFAYPITKLIASGKQQAVQRAVFACLVLGNANVMPLLVMQSLCDTFPPLMRTPHCYDKSMGYASLFLTVINIISWTVLYQFLRDSKDS--DHFREEEAPLLSQTGFRSSINH------PMDLDEPRAPIIDAIKRVLCSHIFLAVVAALAIAIVYPLGNAFLDDDGVLRPFLLSINILGNVVVPVNSLIVGAELYNSLYGCRDEDR---YIKYKDEEFGSSTFLVILFWRLVAFPWIARILYVLLGLDSKLGDPLLGIFGLVEFNNPTANTTVMLISVVSTRLPRIGDQLRYDVAKTVFWQFLATPIFLTLNTAAALHLQYA 408          
BLAST of Gchil6824.t1 vs. uniprot
Match: A0A2V3ISQ9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ9_9FLOR)

HSP 1 Score: 382 bits (981), Expect = 4.640e-127
Identity = 216/419 (51.55%), Postives = 286/419 (68.26%), Query Frame = 0
Query:    1 MSASSHILGSSISGSIELLTLCSAGAYLVSAGILDRRLTRRLSKATKDMFIPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAFAFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMETPQCYEKSMGYASLFLTIVNIISWMTLYQYLRASPDNVVGTLAA--EEDPLLQEEGTTGVVANGDGAAPEEDFDEQDGFAEAVYRAFNSPIFLSMIAAVVIAITYPISNALLNHNGILRPVFLSIKILGNVVVPVNALVVGAEFYHSCKEEDKRQNHVYQE-NEMFGNRVFVVILLWRLVVLPWLARFAYSTLNVSSQVHNPLLGIFGLVEFNNPTANTTVMMMSLVRKRLRRAGPQLSRDVVRTVLFQFLCTPVLLTLNTAAALHLQYS 416
            MS ++ ILGSSI GS+ELLTL S GA LV  G+  + +T  LS+A   +FIP LVF SIL TTHSA++++  ++   SALQ+IWVP++LA ++  + A  AFP+TR+IA  KQE+V+RAIF CL LGNAN +PLLVMQSLCDTF PL +  QCY KSMGYASLFLT+VNI+SW  L+QYL  +PD+   +LAA  EE  LLQ       +   D    + D    D   EA+ RA  SP F+++++++  AI   + +A L+  G+LRP  LSI I+G +VVPV+ ++VG+E Y S     + +  V +   E FG + FVVIL  R+V+LP +AR  Y   N S +VHN LLGIFGLVEFN PTAN TV+M+S+  + L R G QL +DV + V +QFL TP+ LTLNTAAAL+LQ+S
Sbjct:    1 MSTAAQILGSSIGGSVELLTLSSVGALLVHIGVFQQAVTSALSRAVYLIFIPALVFGSILETTHSALKSVRETNGDPSALQEIWVPVVLALIIYVITAIIAFPVTRLIARSKQEAVKRAIFACLILGNANTMPLLVMQSLCDTFLPLQQGGQCYPKSMGYASLFLTVVNIVSWTALFQYLMYAPDS---SLAASDEEHALLQPRPAPQHIRPLD--HEDVDVSRPDPVKEAIMRALVSPPFIAVVSSMTCAIIPGLGDAFLHEQGLLRPFLLSINIVGGIVVPVSCMIVGSELYRSLASSSEDEELVKRRPQEQFGTQTFVVILFVRMVLLPLVAREIYRAFNFSERVHNHLLGIFGLVEFNVPTANNTVIMISIAAESLPRIGRQLRQDVSKAVFWQFLATPIFLTLNTAAALNLQFS 414          
BLAST of Gchil6824.t1 vs. uniprot
Match: A0A2V3IXQ6_9FLOR (Protein PIN-LIKES 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXQ6_9FLOR)

HSP 1 Score: 183 bits (465), Expect = 1.140e-50
Identity = 112/374 (29.95%), Postives = 192/374 (51.34%), Query Frame = 0
Query:   42 LSKATKDMFIPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAFAFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMETPQCYEKSMGYASLFLTIVNIISWMTLYQYLRASPDNVVGTLAAEEDPLLQEEGTTGVVANGDGAAPEEDFDEQDGFAEAVYRAFNSPIFLSMIAAVVIAITYPISNALLNHNGILRPVFLSIKILGNVVVPVNALVVGAEFYHSCKEEDKRQNHVYQENEMFGNRVFVVILLWRLVVLPWLARFAYSTLNVSSQVHNPLLGIFGLVEFNNPTANTTVMMMSLVRKRLRRAGPQLSRDVVRTVLFQFLCTPVLLTLNTAAALHLQY 415
            +S     +F+P L+F+++L T        L   E  ++ Q+ W+P+  + +V  +     F ++R +A +K E  +R IF+C+ LGN+N +PLL+M+SLCD+F PL E   C+ K+  Y +L+ T    + +  +Y Y+  + D+       EE PLL E              P +       F   + R+  +P   ++I    +      ++  L  N  LR V  +I+++G+V VP+++++VG + Y S     K  +H     + FGN +  +I L RLV+ P++ R+ Y+   +   +    LG+F L EF   TAN  +++  ++     R G  + RDV + +  Q+L  PVL+TLNTA AL +QY
Sbjct:    1 MSNGVYKIFLPALIFIAMLDT--------LNDSEGKASSQEWWIPLFFSVVVSIITMVVGFLLSRALARNKAEFTKRTIFMCIVLGNSNSMPLLIMKSLCDSFQPLQEKELCFMKATTYGTLYNTFFIFLGFSVIYPYVLDADDDQ----EHEEQPLLGE------------TPPRQRKTLTCDFITVIKRSLLAPPTATVILTSSLRWIPGFADVFLKDNSPLRSVTEAIELVGSVAVPMSSVIVGGDLYESLTSHRKCSDH----RKEFGNGIVAMICLIRLVLFPFVGRWLYTYFGLQDFIALKELGVFMLTEFGVVTANNAMIIAGIITAMYPRRGETMKRDVAKCLFLQYLVAPVLVTLNTALALQIQY 346          
BLAST of Gchil6824.t1 vs. uniprot
Match: A0A1X6NVP0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVP0_PORUM)

HSP 1 Score: 66.6 bits (161), Expect = 1.820e-8
Identity = 38/142 (26.76%), Postives = 71/142 (50.00%), Query Frame = 0
Query:   42 LSKATKDMFIPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAFAFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMETPQCYEKSMGYASLFLTIVNIISWMTLYQYLRAS 183
            +S+    +F+PCL+F+SI+ T ++A ++ +TS   +      W  ++L    +   A   +   R ++       RRA  +    GN+  LP+L+  S+CD + PL+    C  ++ GY SL+L + +   W    +YL  +
Sbjct:    1 MSRMIVSLFLPCLLFISIVETLYAAAQSPVTSTTPVLLAMPAWAIVIL----IECAAVGTWVSRRWLSPTLSRPDRRACVVACVFGNSGQLPILLAGSVCDNYGPLVGDAGCKARATGYCSLYLLVWSSTLWTLGNRYLAGA 138          
The following BLAST results are available for this feature:
BLAST of Gchil6824.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J3L9_9FLOR1.610e-15859.29Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3ISQ9_9FLOR4.640e-12751.55Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3IXQ6_9FLOR1.140e-5029.95Protein PIN-LIKES 5 n=1 Tax=Gracilariopsis chorda ... [more]
A0A1X6NVP0_PORUM1.820e-826.76Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 16..183
e-value: 8.4E-12
score: 44.2
IPR045033Protein PIN-LIKES 1/3/4/5/7PANTHERPTHR31651FAMILY NOT NAMEDcoord: 14..409
NoneNo IPR availablePANTHERPTHR31651:SF31AUXIN EFFLUX CARRIERcoord: 14..409
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 141..159
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 312..332
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 160..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 255..273
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 293..311
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 393..415
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..232
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 72..82
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 233..254
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 352..373
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 108..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 374..392
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..292
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 333..351
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 416..419
NoneNo IPR availableTMHMMTMhelixcoord: 237..259
NoneNo IPR availableTMHMMTMhelixcoord: 269..291
NoneNo IPR availableTMHMMTMhelixcoord: 15..34
NoneNo IPR availableTMHMMTMhelixcoord: 349..371
NoneNo IPR availableTMHMMTMhelixcoord: 116..138
NoneNo IPR availableTMHMMTMhelixcoord: 158..180
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 312..334
NoneNo IPR availableTMHMMTMhelixcoord: 392..414

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:65469..66951 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1Gchil6824.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 65469..66951 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6824.t1 ID=Gchil6824.t1|Name=Gchil6824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MSASSHILGSSISGSIELLTLCSAGAYLVSAGILDRRLTRRLSKATKDMF
IPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAF
AFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMET
PQCYEKSMGYASLFLTIVNIISWMTLYQYLRASPDNVVGTLAAEEDPLLQ
EEGTTGVVANGDGAAPEEDFDEQDGFAEAVYRAFNSPIFLSMIAAVVIAI
TYPISNALLNHNGILRPVFLSIKILGNVVVPVNALVVGAEFYHSCKEEDK
RQNHVYQENEMFGNRVFVVILLWRLVVLPWLARFAYSTLNVSSQVHNPLL
GIFGLVEFNNPTANTTVMMMSLVRKRLRRAGPQLSRDVVRTVLFQFLCTP
VLLTLNTAAALHLQYSGDM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004776Mem_trans
IPR045033PILS1/3/4/5/7