Gchil6824.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6824.t1
Unique NameGchil6824.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:65469..66951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705880.1
PFAMsMem_trans
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Evalue1.2e-18
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6824Gchil6824Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 65469..66951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1Gchil6824.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 65469..66951 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1.stop1Gchil6824.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 65469..65471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1.CDS1Gchil6824.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 65469..65837 -
Gchil6824.t1.CDS2Gchil6824.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 65911..66051 -
Gchil6824.t1.CDS3Gchil6824.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 66126..66359 -
Gchil6824.t1.CDS4Gchil6824.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 66436..66951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1.exon1Gchil6824.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 65469..65837 -
Gchil6824.t1.exon2Gchil6824.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 65911..66051 -
Gchil6824.t1.exon3Gchil6824.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 66126..66359 -
Gchil6824.t1.exon4Gchil6824.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 66436..66951 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1.intron1Gchil6824.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 65838..65910 -
Gchil6824.t1.intron2Gchil6824.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 66052..66125 -
Gchil6824.t1.intron3Gchil6824.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 66360..66435 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6824.t1.start1Gchil6824.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 66949..66951 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6824.t1 ID=Gchil6824.t1|Name=Gchil6824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp
MSASSHILGSSISGSIELLTLCSAGAYLVSAGILDRRLTRRLSKATKDMF
IPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAF
AFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMET
PQCYEKSMGYASLFLTIVNIISWMTLYQYLRASPDNVVGTLAAEEDPLLQ
EEGTTGVVANGDGAAPEEDFDEQDGFAEAVYRAFNSPIFLSMIAAVVIAI
TYPISNALLNHNGILRPVFLSIKILGNVVVPVNALVVGAEFYHSCKEEDK
RQNHVYQENEMFGNRVFVVILLWRLVVLPWLARFAYSTLNVSSQVHNPLL
GIFGLVEFNNPTANTTVMMMSLVRKRLRRAGPQLSRDVVRTVLFQFLCTP
VLLTLNTAAALHLQYSGDM*
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spliced messenger RNA

>Gchil6824.t1 ID=Gchil6824.t1|Name=Gchil6824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004376_pilon:65469..66951- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTTCTTCTCATATCCTCGGGTCCAGTATCAGCGGTAGTATTGA
GCTGTTAACGCTATGTTCTGCCGGAGCCTATCTAGTCTCTGCGGGAATTC
TCGATCGCCGATTGACAAGAAGGTTATCCAAGGCAACAAAGGATATGTTC
ATACCTTGTCTGGTTTTCGTTTCCATTTTGCACACTACACATTCTGCCAT
AGAAACCTTACTTACCAGCGACGAGTCGATATCAGCTCTGCAACAAATTT
GGGTACCTATTTTGCTTGCATTTCTTGTGCTGGGCGTTGGTGCAGCGTTT
GCGTTTCCGATAACAAGAGTCATAGCTGCAGATAAGCAAGAATCGGTGCG
AAGGGCAATATTTCTATGCCTTACTCTCGGAAATGCAAATGTCTTGCCTT
TGCTTGTCATGCAATCTCTCTGTGATACATTTCCACCATTGATGGAAACA
CCGCAGTGTTACGAAAAGAGCATGGGGTATGCATCCCTTTTTCTTACCAT
CGTAAACATAATATCGTGGATGACATTATATCAGTACTTGAGAGCCTCTC
CTGACAACGTCGTTGGGACACTCGCTGCGGAAGAAGACCCGTTGCTGCAA
GAAGAAGGCACAACTGGAGTGGTGGCTAATGGAGATGGTGCTGCACCTGA
AGAGGACTTCGATGAGCAAGATGGATTTGCAGAAGCTGTGTATCGCGCGT
TTAATTCCCCAATCTTCCTTTCCATGATCGCCGCCGTAGTGATCGCAATT
ACTTACCCGATTAGCAATGCGTTGCTAAACCATAATGGCATTTTGAGACC
AGTGTTCCTCTCGATCAAGATTCTTGGCAACGTTGTTGTTCCTGTGAATG
CTCTAGTGGTGGGTGCTGAATTCTATCATTCTTGCAAAGAGGAGGACAAA
CGGCAAAACCACGTTTACCAAGAAAATGAAATGTTTGGCAACCGCGTCTT
TGTAGTGATCCTTCTGTGGCGGCTCGTTGTTTTGCCATGGCTGGCTCGAT
TTGCATACAGCACACTGAATGTGTCTTCTCAAGTGCACAACCCTTTGCTC
GGCATATTTGGATTGGTAGAATTTAACAACCCTACTGCGAACACAACTGT
GATGATGATGTCATTAGTGAGAAAGAGATTAAGACGCGCTGGCCCACAAC
TTTCTCGTGATGTGGTTCGGACTGTGCTCTTCCAATTCTTATGCACCCCT
GTTCTCTTGACATTGAATACCGCCGCCGCTCTTCATTTGCAATACTCGGG
CGACATGTGA
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protein sequence of Gchil6824.t1

>Gchil6824.t1 ID=Gchil6824.t1|Name=Gchil6824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MSASSHILGSSISGSIELLTLCSAGAYLVSAGILDRRLTRRLSKATKDMF
IPCLVFVSILHTTHSAIETLLTSDESISALQQIWVPILLAFLVLGVGAAF
AFPITRVIAADKQESVRRAIFLCLTLGNANVLPLLVMQSLCDTFPPLMET
PQCYEKSMGYASLFLTIVNIISWMTLYQYLRASPDNVVGTLAAEEDPLLQ
EEGTTGVVANGDGAAPEEDFDEQDGFAEAVYRAFNSPIFLSMIAAVVIAI
TYPISNALLNHNGILRPVFLSIKILGNVVVPVNALVVGAEFYHSCKEEDK
RQNHVYQENEMFGNRVFVVILLWRLVVLPWLARFAYSTLNVSSQVHNPLL
GIFGLVEFNNPTANTTVMMMSLVRKRLRRAGPQLSRDVVRTVLFQFLCTP
VLLTLNTAAALHLQYSGDM*
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mRNA from alignment at tig00004376_pilon:65469..66951-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6824.t1 ID=Gchil6824.t1|Name=Gchil6824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1483bp|location=Sequence derived from alignment at tig00004376_pilon:65469..66951- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTTCTTCTCATATCCTCGGGTCCAGTATCAGCGGTAGTATTGA
GCTGTTAACGCTATGTTCTGCCGGAGCCTATCTAGTCTCTGCGGGAATTC
TCGATCGCCGATTGACAAGAAGGTTATCCAAGGCAACAAAGGATATGTTC
ATACCTTGTCTGGTTTTCGTTTCCATTTTGCACACTACACATTCTGCCAT
AGAAACCTTACTTACCAGCGACGAGTCGATATCAGCTCTGCAACAAATTT
GGGTACCTATTTTGCTTGCATTTCTTGTGCTGGGCGTTGGTGCAGCGTTT
GCGTTTCCGATAACAAGAGTCATAGCTGCAGATAAGCAAGAATCGGTGCG
AAGGGCAATATTTCTATGCCTTACTCTCGGAAATGCAAATGTCTTGCCTT
TGCTTGTCATGCAATCTCTCTGTGATACATTTCCACCATTGATGGAAACA
CCGCAGTGTTACGAAAAGAGCATGGGGTATGCATCCCTTTTTCTTACCAT
CGTAAACATAATATCGGTAAGTTCGCACGCACCACCATTGTAGTCACACA
CACAGACTGACCATCGTTTTTTTGCACCCTGTATTTGCATAGTGGATGAC
ATTATATCAGTACTTGAGAGCCTCTCCTGACAACGTCGTTGGGACACTCG
CTGCGGAAGAAGACCCGTTGCTGCAAGAAGAAGGCACAACTGGAGTGGTG
GCTAATGGAGATGGTGCTGCACCTGAAGAGGACTTCGATGAGCAAGATGG
ATTTGCAGAAGCTGTGTATCGCGCGTTTAATTCCCCAATCTTCCTTTCCA
TGATCGCCGCCGTAGTGATCGCAATTGTATGTATCAGTTCTATACCGCTT
GCGTAGTAGATATTAACATACTAACTGATTCTTTGTTGCGACCTCGAAAG
ACTTACCCGATTAGCAATGCGTTGCTAAACCATAATGGCATTTTGAGACC
AGTGTTCCTCTCGATCAAGATTCTTGGCAACGTTGTTGTTCCTGTGAATG
CTCTAGTGGTGGGTGCTGAATTCTATCATTCTTGCAAAGAGGTACGTCGT
CGCACCTTTTCCGCATTTTTCCCGTATCTGTCGTTACTCACAATCTAATT
TGATCTTTGTTAAGGAGGACAAACGGCAAAACCACGTTTACCAAGAAAAT
GAAATGTTTGGCAACCGCGTCTTTGTAGTGATCCTTCTGTGGCGGCTCGT
TGTTTTGCCATGGCTGGCTCGATTTGCATACAGCACACTGAATGTGTCTT
CTCAAGTGCACAACCCTTTGCTCGGCATATTTGGATTGGTAGAATTTAAC
AACCCTACTGCGAACACAACTGTGATGATGATGTCATTAGTGAGAAAGAG
ATTAAGACGCGCTGGCCCACAACTTTCTCGTGATGTGGTTCGGACTGTGC
TCTTCCAATTCTTATGCACCCCTGTTCTCTTGACATTGAATACCGCCGCC
GCTCTTCATTTGCAATACTCGGGCGACATGTGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:65469..66951-

>Gchil6824.t1 ID=Gchil6824.t1|Name=Gchil6824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00004376_pilon:65469..66951- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTTCTTCTCATATCCTCGGGTCCAGTATCAGCGGTAGTATTGA
GCTGTTAACGCTATGTTCTGCCGGAGCCTATCTAGTCTCTGCGGGAATTC
TCGATCGCCGATTGACAAGAAGGTTATCCAAGGCAACAAAGGATATGTTC
ATACCTTGTCTGGTTTTCGTTTCCATTTTGCACACTACACATTCTGCCAT
AGAAACCTTACTTACCAGCGACGAGTCGATATCAGCTCTGCAACAAATTT
GGGTACCTATTTTGCTTGCATTTCTTGTGCTGGGCGTTGGTGCAGCGTTT
GCGTTTCCGATAACAAGAGTCATAGCTGCAGATAAGCAAGAATCGGTGCG
AAGGGCAATATTTCTATGCCTTACTCTCGGAAATGCAAATGTCTTGCCTT
TGCTTGTCATGCAATCTCTCTGTGATACATTTCCACCATTGATGGAAACA
CCGCAGTGTTACGAAAAGAGCATGGGGTATGCATCCCTTTTTCTTACCAT
CGTAAACATAATATCGTGGATGACATTATATCAGTACTTGAGAGCCTCTC
CTGACAACGTCGTTGGGACACTCGCTGCGGAAGAAGACCCGTTGCTGCAA
GAAGAAGGCACAACTGGAGTGGTGGCTAATGGAGATGGTGCTGCACCTGA
AGAGGACTTCGATGAGCAAGATGGATTTGCAGAAGCTGTGTATCGCGCGT
TTAATTCCCCAATCTTCCTTTCCATGATCGCCGCCGTAGTGATCGCAATT
ACTTACCCGATTAGCAATGCGTTGCTAAACCATAATGGCATTTTGAGACC
AGTGTTCCTCTCGATCAAGATTCTTGGCAACGTTGTTGTTCCTGTGAATG
CTCTAGTGGTGGGTGCTGAATTCTATCATTCTTGCAAAGAGGAGGACAAA
CGGCAAAACCACGTTTACCAAGAAAATGAAATGTTTGGCAACCGCGTCTT
TGTAGTGATCCTTCTGTGGCGGCTCGTTGTTTTGCCATGGCTGGCTCGAT
TTGCATACAGCACACTGAATGTGTCTTCTCAAGTGCACAACCCTTTGCTC
GGCATATTTGGATTGGTAGAATTTAACAACCCTACTGCGAACACAACTGT
GATGATGATGTCATTAGTGAGAAAGAGATTAAGACGCGCTGGCCCACAAC
TTTCTCGTGATGTGGTTCGGACTGTGCTCTTCCAATTCTTATGCACCCCT
GTTCTCTTGACATTGAATACCGCCGCCGCTCTTCATTTGCAATACTCGGG
CGACATGTGA
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