Gchil6825.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6825.t1
Unique NameGchil6825.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length177
Homology
BLAST of Gchil6825.t1 vs. uniprot
Match: A0A2V3J4Q4_9FLOR (E3 ubiquitin-protein ligase highwire n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4Q4_9FLOR)

HSP 1 Score: 134 bits (338), Expect = 3.490e-34
Identity = 67/137 (48.91%), Postives = 88/137 (64.23%), Query Frame = 0
Query:    1 MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELNYMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSKVAECCVRVVVDGSTVDEGEMLLDTARAGPGEVPLPNL 137
            M QV+DLR F R PS  ++Q S R MARTDCPS  RL+ A+Y +   EL +  T E L+ P D+WDE  +   P E+ACF ++ + GKD RFW GLYG+K+A+  VRVV+D S  DE ++LL+ A       PLP L
Sbjct:  317 MAQVIDLRPFARFPSSAVLQVSVRHMARTDCPSVMRLQTAVYDQHFNELKHFCTDE-LQPPPDFWDERSIEVPPTEHACFVVVVVHGKDTRFWQGLYGAKIADVAVRVVLDDSVRDESQVLLEQALPNTTS-PLPRL 451          
BLAST of Gchil6825.t1 vs. uniprot
Match: A0A7S0BCM5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BCM5_9RHOD)

HSP 1 Score: 113 bits (282), Expect = 7.320e-28
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 0
Query:    1 MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELNYMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSKVAECCVRVVVDGSTVDEGEMLLDTA 125
            MVQ V+LR+FV  PS + V+ SA++MARTDCPS F L + +   + + L+  S+G  L APADYWD  R +  P + A FAL+   GKD+RFW G +GSKV+   VRV+ D S  D+ +++   A
Sbjct:   97 MVQGVNLRKFVVHPSDICVEVSAKYMARTDCPSVFELVSCILDSEGRILSSFSSG-VLSAPADYWDGVRHVFEPTDGAHFALVVARGKDQRFWRGNFGSKVSRLSVRVLFDESVTDQRDIIYPEA 220          
BLAST of Gchil6825.t1 vs. uniprot
Match: A0A7S1VCR5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VCR5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.370e-20
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 0
Query:    1 MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELNYMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSKVAECCVRVVVDGSTVDE 117
            M Q VDLR  V + ++  ++ SA+FMARTDCPS F LE  +     + + +  +   L+APAD W+ ARL+      A +A++ I+G+D RFW G YGSKVA+C +RV++  ST DE
Sbjct:   63 MTQRVDLRD-VDERARGAIEVSAKFMARTDCPSVFHLEGLLLDRDGRAILHEKSP-VLDAPADCWETARLVLERRPGAVYAMIVIAGRDSRFWQGNYGSKVADCFIRVLM--STGDE 175          
BLAST of Gchil6825.t1 vs. uniprot
Match: A0A7S4VW60_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VW60_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.400e-20
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 0
Query:    1 MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELNYMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSKVAECCVRVV 109
            M Q + L + V +PS V ++ SA+FM RTDCPS F+++  +  ++ + ++ + T   L APADYW+ + L+  P   A   ++ + GKD RFW G +GSKVA C VR++
Sbjct:  353 MSQTIPLHRIVYNPSSVRLEVSAKFMGRTDCPSVFQMQVVLLDDERRVVHRVETS-ALSAPADYWERSCLIIEPTRGAYEVVIMVFGKDERFWQGNFGSKVAGCSVRIL 460          
BLAST of Gchil6825.t1 vs. uniprot
Match: R7QNX4_CHOCR (FBA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNX4_CHOCR)

HSP 1 Score: 60.5 bits (145), Expect = 9.800e-9
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query:   58 LEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSKVAECCVRVVVDGSTVDEGEMLLDTARAGPGEV 132
            L APA+ W+E R++    E   +  + ++GKD RFW G YG+KV+EC VRV+  G   + GEM       GP EV
Sbjct:    2 LAAPAECWEEFRVVFAAREGVKYVTIVVAGKDDRFWAGDYGAKVSECAVRVL--GGAEERGEM-------GPEEV 67          
The following BLAST results are available for this feature:
BLAST of Gchil6825.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J4Q4_9FLOR3.490e-3448.91E3 ubiquitin-protein ligase highwire n=1 Tax=Graci... [more]
A0A7S0BCM5_9RHOD7.320e-2846.40Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1VCR5_9STRA2.370e-2044.44Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4VW60_9STRA9.400e-2040.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
R7QNX4_CHOCR9.800e-942.67FBA domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.260coord: 1..109
e-value: 8.4E-12
score: 47.2
IPR007397F-box associated (FBA) domainPROSITEPS51114FBAcoord: 1..110
score: 10.006594

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:87976..88506 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6825.t1Gchil6825.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 87976..88506 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6825.t1 ID=Gchil6825.t1|Name=Gchil6825.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=177bp
MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELN
YMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSK
VAECCVRVVVDGSTVDEGEMLLDTARAGPGEVPLPNLRDFHHVVAAFADR
MDGADGAPVLPHRRRRQRAIRRWLLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007397F-box-assoc_dom