Gchil6825.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6825.t1
Unique NameGchil6825.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:87976..88506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps24345
PFAMsCupin_8
Max annot lvl2836|Bacillariophyta
Evalue2.11e-20
EggNOG OGsCOG1226@1|root,KOG1428@1|root,KOG1428@2759|Eukaryota,KOG2508@2759|Eukaryota,2XD56@2836|Bacillariophyta
DescriptionCupin-like domain
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6825Gchil6825Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 87976..88506 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6825.t1.stop1Gchil6825.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 87976..87978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6825.t1.CDS1Gchil6825.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 87976..88506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6825.t1.exon1Gchil6825.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 87976..88506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6825.t1.start1Gchil6825.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 88504..88506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6825.t1Gchil6825.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 87976..88506 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6825.t1 ID=Gchil6825.t1|Name=Gchil6825.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=177bp
MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELN
YMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSK
VAECCVRVVVDGSTVDEGEMLLDTARAGPGEVPLPNLRDFHHVVAAFADR
MDGADGAPVLPHRRRRQRAIRRWLLG*
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spliced messenger RNA

>Gchil6825.t1 ID=Gchil6825.t1|Name=Gchil6825.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00004376_pilon:87976..88506- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAAGTTGTTGACCTGCGCCAATTCGTGCGAGATCCATCTCAAGT
GATTGTACAATTCTCCGCTCGTTTCATGGCACGCACTGACTGTCCGTCAG
AATTCCGCCTTGAAGCAGCCATGTACAGCGAACAGGCACAGGAATTGAAC
TATATGAGCACGGGCGAACCTCTTGAAGCGCCGGCTGATTACTGGGACGA
AGCGAGGCTTCTATCAAATCCAGTCGAAAATGCCTGTTTTGCGCTGTTGG
CTATCTCCGGGAAAGACCGCCGCTTCTGGAATGGGTTATACGGCTCAAAA
GTGGCCGAGTGCTGCGTGCGGGTGGTAGTGGACGGCTCGACCGTCGATGA
GGGTGAGATGCTTCTGGACACGGCGCGCGCTGGTCCGGGCGAAGTGCCGC
TTCCGAACCTCCGGGACTTCCACCATGTCGTGGCCGCCTTCGCAGACAGG
ATGGACGGGGCAGACGGTGCTCCTGTCCTTCCGCATCGTCGTCGTCGTCA
AAGAGCAATTAGACGCTGGCTTTTGGGATGA
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protein sequence of Gchil6825.t1

>Gchil6825.t1 ID=Gchil6825.t1|Name=Gchil6825.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=177bp
MVQVVDLRQFVRDPSQVIVQFSARFMARTDCPSEFRLEAAMYSEQAQELN
YMSTGEPLEAPADYWDEARLLSNPVENACFALLAISGKDRRFWNGLYGSK
VAECCVRVVVDGSTVDEGEMLLDTARAGPGEVPLPNLRDFHHVVAAFADR
MDGADGAPVLPHRRRRQRAIRRWLLG*
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mRNA from alignment at tig00004376_pilon:87976..88506-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6825.t1 ID=Gchil6825.t1|Name=Gchil6825.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00004376_pilon:87976..88506- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCAAGTTGTTGACCTGCGCCAATTCGTGCGAGATCCATCTCAAGT
GATTGTACAATTCTCCGCTCGTTTCATGGCACGCACTGACTGTCCGTCAG
AATTCCGCCTTGAAGCAGCCATGTACAGCGAACAGGCACAGGAATTGAAC
TATATGAGCACGGGCGAACCTCTTGAAGCGCCGGCTGATTACTGGGACGA
AGCGAGGCTTCTATCAAATCCAGTCGAAAATGCCTGTTTTGCGCTGTTGG
CTATCTCCGGGAAAGACCGCCGCTTCTGGAATGGGTTATACGGCTCAAAA
GTGGCCGAGTGCTGCGTGCGGGTGGTAGTGGACGGCTCGACCGTCGATGA
GGGTGAGATGCTTCTGGACACGGCGCGCGCTGGTCCGGGCGAAGTGCCGC
TTCCGAACCTCCGGGACTTCCACCATGTCGTGGCCGCCTTCGCAGACAGG
ATGGACGGGGCAGACGGTGCTCCTGTCCTTCCGCATCGTCGTCGTCGTCA
AAGAGCAATTAGACGCTGGCTTTTGGGATGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:87976..88506-

>Gchil6825.t1 ID=Gchil6825.t1|Name=Gchil6825.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00004376_pilon:87976..88506- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCAAGTTGTTGACCTGCGCCAATTCGTGCGAGATCCATCTCAAGT
GATTGTACAATTCTCCGCTCGTTTCATGGCACGCACTGACTGTCCGTCAG
AATTCCGCCTTGAAGCAGCCATGTACAGCGAACAGGCACAGGAATTGAAC
TATATGAGCACGGGCGAACCTCTTGAAGCGCCGGCTGATTACTGGGACGA
AGCGAGGCTTCTATCAAATCCAGTCGAAAATGCCTGTTTTGCGCTGTTGG
CTATCTCCGGGAAAGACCGCCGCTTCTGGAATGGGTTATACGGCTCAAAA
GTGGCCGAGTGCTGCGTGCGGGTGGTAGTGGACGGCTCGACCGTCGATGA
GGGTGAGATGCTTCTGGACACGGCGCGCGCTGGTCCGGGCGAAGTGCCGC
TTCCGAACCTCCGGGACTTCCACCATGTCGTGGCCGCCTTCGCAGACAGG
ATGGACGGGGCAGACGGTGCTCCTGTCCTTCCGCATCGTCGTCGTCGTCA
AAGAGCAATTAGACGCTGGCTTTTGGGATGA
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