Gchil6843.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6843.t1
Unique NameGchil6843.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:372222..373736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6843Gchil6843Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 372222..373736 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6843.t1.stop1Gchil6843.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 372222..372224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6843.t1.CDS1Gchil6843.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 372222..373736 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6843.t1.exon1Gchil6843.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 372222..373736 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6843.t1.start1Gchil6843.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 373734..373736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6843.t1Gchil6843.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 372222..373736 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6843.t1 ID=Gchil6843.t1|Name=Gchil6843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=505bp
MFGAAQSAPSLFASTQAQTTSPFGAANSSSLFGGGSAQQSSSSFLFGGAP
PQSSASNLFGGGAPASSSSLFGGSANSSSMFGANTSSSLFGTQASSSSLF
GGSATSSGLFGQPSGKSLFGSAAAQQAPQGVAHQQQQQIEITLRTRISEL
PQNFQNDLFAVERHLREQRNKVSLLSSKRGDVDARLLQTKTDGADISRLL
VKLKAELEALEANATSLKAAVRLGRASAQPVVTALENLSRRGYSGYLDQN
GLPYMDTGARMQAAHVPDEYFIRIVEELEARATDYKAEIDEIAAFLKAQG
IVLSTGASGFGNGAGASLLDNLSQRYVDIGLSGGNAPSIPRGTIEDIIRR
QYEYFMVVASHIASVHENLRSVREQFLQVLKERDPDAPNPFQQADMREKV
EKDRQRVVFEKRAADGALHFVTEMNSLTPSSSAPGAVVKGSGFGASSSMA
ISLTQSSLLQSNPSTGSSSGGLFGGGFSFGGTHSAPASTADGGDLGRAAR
RKRE*
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spliced messenger RNA

>Gchil6843.t1 ID=Gchil6843.t1|Name=Gchil6843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00004376_pilon:372222..373736- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGAGCAGCCCAGTCCGCTCCGTCTTTGTTTGCTAGCACTCAGGC
GCAGACCACCTCTCCGTTTGGTGCCGCCAATTCTTCATCTCTCTTTGGCG
GGGGATCTGCACAACAGTCCTCTTCTTCATTTTTGTTTGGTGGGGCTCCT
CCGCAGTCTAGCGCGAGTAATTTGTTTGGGGGTGGTGCCCCAGCAAGCTC
CTCCTCATTGTTTGGGGGAAGCGCTAATTCCTCCTCTATGTTTGGTGCGA
ACACCAGCTCCTCGTTGTTCGGAACGCAGGCAAGTTCTTCATCTCTGTTC
GGCGGGTCCGCGACTTCGTCCGGGCTTTTCGGGCAGCCTTCCGGTAAATC
CCTGTTTGGGAGTGCGGCCGCTCAACAAGCGCCACAAGGTGTCGCTCATC
AACAGCAACAACAAATCGAAATCACTCTTCGCACACGCATTTCCGAGCTG
CCGCAAAACTTTCAGAACGATTTGTTTGCGGTAGAGCGTCATCTACGTGA
GCAGCGGAATAAAGTCTCTCTACTATCGTCAAAACGGGGAGATGTTGATG
CCAGGCTTCTTCAAACGAAAACAGATGGAGCCGACATATCCAGGCTATTG
GTCAAGCTCAAGGCCGAACTGGAAGCTCTGGAGGCGAATGCAACCTCGCT
TAAAGCGGCTGTTCGACTAGGGCGTGCTTCTGCCCAACCTGTGGTGACGG
CGTTGGAAAACCTTTCGCGAAGGGGATACTCTGGGTATCTGGATCAAAAC
GGGCTTCCATACATGGACACAGGAGCCAGAATGCAGGCAGCGCATGTTCC
AGACGAATACTTTATACGCATTGTGGAGGAACTGGAGGCGAGAGCAACAG
ATTACAAAGCAGAGATTGATGAGATCGCTGCATTCTTGAAAGCACAAGGC
ATAGTGCTCAGCACTGGAGCAAGCGGCTTTGGGAATGGCGCTGGCGCAAG
TTTACTTGATAATTTGTCGCAAAGGTACGTTGATATCGGGCTTTCTGGTG
GCAATGCACCAAGTATTCCGAGAGGCACTATTGAGGACATCATCCGCCGT
CAGTATGAATACTTTATGGTCGTTGCCAGTCACATTGCCAGTGTTCATGA
GAACTTGCGTTCGGTACGAGAGCAATTCTTGCAAGTGTTAAAGGAGCGCG
ACCCAGACGCACCAAACCCGTTCCAACAAGCAGACATGCGCGAAAAGGTT
GAAAAGGATAGGCAACGTGTTGTGTTTGAGAAACGAGCGGCAGATGGTGC
GCTGCATTTTGTCACTGAGATGAATTCTTTGACACCATCTAGCTCTGCAC
CTGGAGCTGTTGTTAAGGGTTCGGGTTTTGGTGCCTCTAGTTCAATGGCG
ATATCGTTAACGCAGTCGTCGCTTTTGCAATCAAACCCAAGTACAGGCAG
TTCGTCGGGAGGGCTTTTTGGTGGCGGGTTTAGCTTCGGGGGCACACATA
GCGCGCCAGCGTCGACGGCAGATGGAGGTGATCTGGGTCGGGCCGCAAGA
CGTAAAAGAGAATAA
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protein sequence of Gchil6843.t1

>Gchil6843.t1 ID=Gchil6843.t1|Name=Gchil6843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=505bp
MFGAAQSAPSLFASTQAQTTSPFGAANSSSLFGGGSAQQSSSSFLFGGAP
PQSSASNLFGGGAPASSSSLFGGSANSSSMFGANTSSSLFGTQASSSSLF
GGSATSSGLFGQPSGKSLFGSAAAQQAPQGVAHQQQQQIEITLRTRISEL
PQNFQNDLFAVERHLREQRNKVSLLSSKRGDVDARLLQTKTDGADISRLL
VKLKAELEALEANATSLKAAVRLGRASAQPVVTALENLSRRGYSGYLDQN
GLPYMDTGARMQAAHVPDEYFIRIVEELEARATDYKAEIDEIAAFLKAQG
IVLSTGASGFGNGAGASLLDNLSQRYVDIGLSGGNAPSIPRGTIEDIIRR
QYEYFMVVASHIASVHENLRSVREQFLQVLKERDPDAPNPFQQADMREKV
EKDRQRVVFEKRAADGALHFVTEMNSLTPSSSAPGAVVKGSGFGASSSMA
ISLTQSSLLQSNPSTGSSSGGLFGGGFSFGGTHSAPASTADGGDLGRAAR
RKRE*
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mRNA from alignment at tig00004376_pilon:372222..373736-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6843.t1 ID=Gchil6843.t1|Name=Gchil6843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00004376_pilon:372222..373736- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGGAGCAGCCCAGTCCGCTCCGTCTTTGTTTGCTAGCACTCAGGC
GCAGACCACCTCTCCGTTTGGTGCCGCCAATTCTTCATCTCTCTTTGGCG
GGGGATCTGCACAACAGTCCTCTTCTTCATTTTTGTTTGGTGGGGCTCCT
CCGCAGTCTAGCGCGAGTAATTTGTTTGGGGGTGGTGCCCCAGCAAGCTC
CTCCTCATTGTTTGGGGGAAGCGCTAATTCCTCCTCTATGTTTGGTGCGA
ACACCAGCTCCTCGTTGTTCGGAACGCAGGCAAGTTCTTCATCTCTGTTC
GGCGGGTCCGCGACTTCGTCCGGGCTTTTCGGGCAGCCTTCCGGTAAATC
CCTGTTTGGGAGTGCGGCCGCTCAACAAGCGCCACAAGGTGTCGCTCATC
AACAGCAACAACAAATCGAAATCACTCTTCGCACACGCATTTCCGAGCTG
CCGCAAAACTTTCAGAACGATTTGTTTGCGGTAGAGCGTCATCTACGTGA
GCAGCGGAATAAAGTCTCTCTACTATCGTCAAAACGGGGAGATGTTGATG
CCAGGCTTCTTCAAACGAAAACAGATGGAGCCGACATATCCAGGCTATTG
GTCAAGCTCAAGGCCGAACTGGAAGCTCTGGAGGCGAATGCAACCTCGCT
TAAAGCGGCTGTTCGACTAGGGCGTGCTTCTGCCCAACCTGTGGTGACGG
CGTTGGAAAACCTTTCGCGAAGGGGATACTCTGGGTATCTGGATCAAAAC
GGGCTTCCATACATGGACACAGGAGCCAGAATGCAGGCAGCGCATGTTCC
AGACGAATACTTTATACGCATTGTGGAGGAACTGGAGGCGAGAGCAACAG
ATTACAAAGCAGAGATTGATGAGATCGCTGCATTCTTGAAAGCACAAGGC
ATAGTGCTCAGCACTGGAGCAAGCGGCTTTGGGAATGGCGCTGGCGCAAG
TTTACTTGATAATTTGTCGCAAAGGTACGTTGATATCGGGCTTTCTGGTG
GCAATGCACCAAGTATTCCGAGAGGCACTATTGAGGACATCATCCGCCGT
CAGTATGAATACTTTATGGTCGTTGCCAGTCACATTGCCAGTGTTCATGA
GAACTTGCGTTCGGTACGAGAGCAATTCTTGCAAGTGTTAAAGGAGCGCG
ACCCAGACGCACCAAACCCGTTCCAACAAGCAGACATGCGCGAAAAGGTT
GAAAAGGATAGGCAACGTGTTGTGTTTGAGAAACGAGCGGCAGATGGTGC
GCTGCATTTTGTCACTGAGATGAATTCTTTGACACCATCTAGCTCTGCAC
CTGGAGCTGTTGTTAAGGGTTCGGGTTTTGGTGCCTCTAGTTCAATGGCG
ATATCGTTAACGCAGTCGTCGCTTTTGCAATCAAACCCAAGTACAGGCAG
TTCGTCGGGAGGGCTTTTTGGTGGCGGGTTTAGCTTCGGGGGCACACATA
GCGCGCCAGCGTCGACGGCAGATGGAGGTGATCTGGGTCGGGCCGCAAGA
CGTAAAAGAGAATAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:372222..373736-

>Gchil6843.t1 ID=Gchil6843.t1|Name=Gchil6843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00004376_pilon:372222..373736- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGGAGCAGCCCAGTCCGCTCCGTCTTTGTTTGCTAGCACTCAGGC
GCAGACCACCTCTCCGTTTGGTGCCGCCAATTCTTCATCTCTCTTTGGCG
GGGGATCTGCACAACAGTCCTCTTCTTCATTTTTGTTTGGTGGGGCTCCT
CCGCAGTCTAGCGCGAGTAATTTGTTTGGGGGTGGTGCCCCAGCAAGCTC
CTCCTCATTGTTTGGGGGAAGCGCTAATTCCTCCTCTATGTTTGGTGCGA
ACACCAGCTCCTCGTTGTTCGGAACGCAGGCAAGTTCTTCATCTCTGTTC
GGCGGGTCCGCGACTTCGTCCGGGCTTTTCGGGCAGCCTTCCGGTAAATC
CCTGTTTGGGAGTGCGGCCGCTCAACAAGCGCCACAAGGTGTCGCTCATC
AACAGCAACAACAAATCGAAATCACTCTTCGCACACGCATTTCCGAGCTG
CCGCAAAACTTTCAGAACGATTTGTTTGCGGTAGAGCGTCATCTACGTGA
GCAGCGGAATAAAGTCTCTCTACTATCGTCAAAACGGGGAGATGTTGATG
CCAGGCTTCTTCAAACGAAAACAGATGGAGCCGACATATCCAGGCTATTG
GTCAAGCTCAAGGCCGAACTGGAAGCTCTGGAGGCGAATGCAACCTCGCT
TAAAGCGGCTGTTCGACTAGGGCGTGCTTCTGCCCAACCTGTGGTGACGG
CGTTGGAAAACCTTTCGCGAAGGGGATACTCTGGGTATCTGGATCAAAAC
GGGCTTCCATACATGGACACAGGAGCCAGAATGCAGGCAGCGCATGTTCC
AGACGAATACTTTATACGCATTGTGGAGGAACTGGAGGCGAGAGCAACAG
ATTACAAAGCAGAGATTGATGAGATCGCTGCATTCTTGAAAGCACAAGGC
ATAGTGCTCAGCACTGGAGCAAGCGGCTTTGGGAATGGCGCTGGCGCAAG
TTTACTTGATAATTTGTCGCAAAGGTACGTTGATATCGGGCTTTCTGGTG
GCAATGCACCAAGTATTCCGAGAGGCACTATTGAGGACATCATCCGCCGT
CAGTATGAATACTTTATGGTCGTTGCCAGTCACATTGCCAGTGTTCATGA
GAACTTGCGTTCGGTACGAGAGCAATTCTTGCAAGTGTTAAAGGAGCGCG
ACCCAGACGCACCAAACCCGTTCCAACAAGCAGACATGCGCGAAAAGGTT
GAAAAGGATAGGCAACGTGTTGTGTTTGAGAAACGAGCGGCAGATGGTGC
GCTGCATTTTGTCACTGAGATGAATTCTTTGACACCATCTAGCTCTGCAC
CTGGAGCTGTTGTTAAGGGTTCGGGTTTTGGTGCCTCTAGTTCAATGGCG
ATATCGTTAACGCAGTCGTCGCTTTTGCAATCAAACCCAAGTACAGGCAG
TTCGTCGGGAGGGCTTTTTGGTGGCGGGTTTAGCTTCGGGGGCACACATA
GCGCGCCAGCGTCGACGGCAGATGGAGGTGATCTGGGTCGGGCCGCAAGA
CGTAAAAGAGAATAA
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