Gchil6843.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6843.t1
Unique NameGchil6843.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length505
Homology
BLAST of Gchil6843.t1 vs. uniprot
Match: A0A2V3IH16_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH16_9FLOR)

HSP 1 Score: 261 bits (667), Expect = 7.610e-81
Identity = 145/202 (71.78%), Postives = 167/202 (82.67%), Query Frame = 0
Query:  261 MQAAHVPDEYFIRIVEELEARATDYKAEIDEIAAFLKAQGIVLSTGASGFGNGAGASLLDNLSQRYVDIGLSGGNAPSIPRG-TIEDIIRRQYEYFMVVASHIASVHENLRSVREQFLQVLKERDPDAPNPFQQADMREKVEKDRQRVVFEKRAADGALHFVTEMNSLTPSSSAPGAVVKGSG---FGASSSMAISLTQSSL 458
            MQAAHVPDEYF R+VEELEARAT+YKAEIDE+A FLKAQGIVLS+GASGFGNG  ASLLDNLSQRY+DIGLS  +  +IPRG TIEDIIRRQY+YFMVVASHIA+V+ENLR+V+EQ+LQVL+ERD D  NPFQQADMREKVEKDRQR++ EKRAA GAL FV  +N+L  SS+A G+     G    G+SS+     TQ SL
Sbjct:    1 MQAAHVPDEYFTRVVEELEARATEYKAEIDEVAEFLKAQGIVLSSGASGFGNGMSASLLDNLSQRYMDIGLSASDMGNIPRGRTIEDIIRRQYDYFMVVASHIANVNENLRAVKEQYLQVLRERDSDVLNPFQQADMREKVEKDRQRLLAEKRAAVGALSFVNSVNALPQSSAATGSAFGNLGTIGIGSSSAAGTLTTQPSL 202          
BLAST of Gchil6843.t1 vs. uniprot
Match: R7QKY7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKY7_CHOCR)

HSP 1 Score: 260 bits (664), Expect = 1.760e-76
Identity = 170/331 (51.36%), Postives = 214/331 (64.65%), Query Frame = 0
Query:  125 QQAPQGVAHQQQQQIEITLRTRISELPQNFQNDLFAVERHLREQRNKVSLLSSKRGDVDARLLQTKTDGADISRLLVKLKAELEALEANATSLKAAVRLGRASAQPVVTALENLSRRGYSG----YLDQNGLPYMDTGARMQ--AAHVPDEYFIRIVEELEARATDYKAEIDEIAAFLKAQGIVLSTG------------ASGFGNGAGASLLDNLSQRYVDIGLSGGNAPSIPRG-TIEDIIRRQYEYFMVVASHIASVHENLRSVREQFLQVLKERDPDAPNPFQQADMREKVEKDRQRVVFEKRAADGALHFVTEMN-SLTPSSSAPG 435
            QQ PQ     Q Q  EI LRTR+ +LPQNFQ DLFAVERHLREQR K + L S   + D+ + QTKT   +I+R L KL+A LEAL AN+ +LKAAVR+ R S +PVV ALENLS+  +      + D     Y  +  +M+    HVP++YF R ++ELE+RA +YK EIDEIA FL+A+G+VLS              A+G  NG   SLLD++SQR   IGL   +     RG TIEDIIRRQYEYFMVVASHI  VHENL ++REQFLQ+L+ RDPDA NPF+ AD REK E+ R++    K A +G   F   MN S  P+++A G
Sbjct:  173 QQQPQ---QSQSQTSEINLRTRVWQLPQNFQTDLFAVERHLREQRIKGTQLLSTGSNFDSDIAQTKTRSTNITRRLAKLRAVLEALRANSETLKAAVRIERGSTEPVVLALENLSKNSFRSEAVLFDDAFSFNYHGSSVQMRDRVTHVPEDYFSRTLDELESRAHEYKREIDEIAEFLRAKGLVLSRSGGKSAIAPSSHSATGTANG---SLLDSISQRQFGIGLGANDMSMESRGKTIEDIIRRQYEYFMVVASHIGGVHENLWALREQFLQLLRVRDPDALNPFELADRREKAEEQRRQSAENKAAENG---FGFSMNESANPAAAAAG 494          
BLAST of Gchil6843.t1 vs. uniprot
Match: A0A5J4Z7G7_PORPP (Nucleoporin p58/p45 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7G7_PORPP)

HSP 1 Score: 102 bits (254), Expect = 2.280e-19
Identity = 85/278 (30.58%), Postives = 139/278 (50.00%), Query Frame = 0
Query:  145 TRISELPQNFQNDLFAVERHLREQRNKVSLLSSKRG---DVDARLLQTKTDGADISRLLVKLKAELEALEANATSLKAAVRLGRASAQPVVTALEN--LSRRGYSGYLD---QNGLPYMDTGARMQAAHVPDEYFIRIVEELEARATDYKAEIDEIAAFLKAQGIVLSTGASGFGNGAGASLLDNLSQRYVDI-GLSGGNAPSIPRGT--------IEDIIRRQYEYFMVVASHIASVHENLRSVREQFLQVLKERDPDAPNPFQQADMREKVEKDRQ 405
            T+I++LP + Q+ L+ +E+H+REQ+ K S +    G   DV  R     T  A +  +L K +A + AL+ +       VR    SA+    ALEN  L+++  S Y     + G  Y   G   Q   +P ++ + +V  LE RA +YK E+DEI  FL+   + L                  L   Y ++   +GG A  +  G         +E +IRR YEYF++VAS   ++H+ +  ++ +++Q L+E +PDAP+PF++A  R    K R+
Sbjct:  251 TKIADLPPHAQSLLYGLEKHMREQKKKASRMPQHEGLFRDVGERCDHVATACASVKNVLDKERAAVGALKYD-------VRAQLKSAENAAIALENDRLNKQHASMYGTTTLRGGSLYQIRGGFEQ--RLPSDFILSMVAGLEKRALEYKKEVDEIDKFLRTAHLDLDA---------------PLETTYNEVLSRAGGRAAPVRSGPAHVSKAKKLEQVIRRMYEYFLLVASQYGNLHDAVDGLKAEYMQWLQETNPDAPDPFEEARRRAVAAKARE 504          
The following BLAST results are available for this feature:
BLAST of Gchil6843.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IH16_9FLOR7.610e-8171.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKY7_CHOCR1.760e-7651.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z7G7_PORPP2.280e-1930.58Nucleoporin p58/p45 n=1 Tax=Porphyridium purpureum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..220
NoneNo IPR availableCOILSCoilCoilcoord: 275..295
NoneNo IPR availableGENE3D6.10.140.1350coord: 263..387
e-value: 6.0E-15
score: 57.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..504
NoneNo IPR availablePANTHERPTHR13437:SF2NUCLEOPORIN P58/P45coord: 96..489
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..504
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
IPR024882Nucleoporin p58/p45PANTHERPTHR13437NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1coord: 96..489

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:372222..373736 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6843.t1Gchil6843.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 372222..373736 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6843.t1 ID=Gchil6843.t1|Name=Gchil6843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=505bp
MFGAAQSAPSLFASTQAQTTSPFGAANSSSLFGGGSAQQSSSSFLFGGAP
PQSSASNLFGGGAPASSSSLFGGSANSSSMFGANTSSSLFGTQASSSSLF
GGSATSSGLFGQPSGKSLFGSAAAQQAPQGVAHQQQQQIEITLRTRISEL
PQNFQNDLFAVERHLREQRNKVSLLSSKRGDVDARLLQTKTDGADISRLL
VKLKAELEALEANATSLKAAVRLGRASAQPVVTALENLSRRGYSGYLDQN
GLPYMDTGARMQAAHVPDEYFIRIVEELEARATDYKAEIDEIAAFLKAQG
IVLSTGASGFGNGAGASLLDNLSQRYVDIGLSGGNAPSIPRGTIEDIIRR
QYEYFMVVASHIASVHENLRSVREQFLQVLKERDPDAPNPFQQADMREKV
EKDRQRVVFEKRAADGALHFVTEMNSLTPSSSAPGAVVKGSGFGASSSMA
ISLTQSSLLQSNPSTGSSSGGLFGGGFSFGGTHSAPASTADGGDLGRAAR
RKRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024882Nucleoporin_p58/p45