Gchil3870.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3870.t1
Unique NameGchil3870.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1126213..1126721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7029.ACYPI002493-PA
Preferred nameGOLT1B
PFAMsGot1
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.77e-46
EggNOG OGsCOG0284@1|root,KOG1743@2759|Eukaryota,3A47E@33154|Opisthokonta,3BPD7@33208|Metazoa,3D67H@33213|Bilateria,41Z7N@6656|Arthropoda,3SMFP@50557|Insecta,3EA93@33342|Paraneoptera
DescriptionGot1/Sft2-like family
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3870Gchil3870Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1126213..1126721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3870.t1Gchil3870.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1126213..1126721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3870.t1.stop1Gchil3870.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1126213..1126215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3870.t1.CDS1Gchil3870.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1126213..1126257 -
Gchil3870.t1.CDS2Gchil3870.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1126335..1126721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3870.t1.exon1Gchil3870.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1126213..1126257 -
Gchil3870.t1.exon2Gchil3870.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1126335..1126721 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3870.t1.intron1Gchil3870.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1126258..1126334 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3870.t1.start1Gchil3870.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1126719..1126721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3870.t1 ID=Gchil3870.t1|Name=Gchil3870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=144bp
MSSPFAITDVRKIGIGLTAFGLAFSVLGVALLFDKGLLAMGNVLYLAGVM
MIIGPTRSVRFFFQKRKAKASVFFFCGMAFVLFGLPVFGMGIELFGFVNL
FGDFFPVVIAFLRRAPVTGKLLGLPLVRNVADRLAGSTTKLPV*
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spliced messenger RNA

>Gchil3870.t1 ID=Gchil3870.t1|Name=Gchil3870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=432bp|location=Sequence derived from alignment at tig00000010_pilon:1126213..1126721- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTCCTTTCGCAATAACGGACGTGCGAAAGATCGGAATCGGTCT
GACCGCGTTCGGCCTTGCGTTTTCCGTTCTTGGTGTGGCGCTTCTCTTCG
ACAAGGGCCTCCTAGCCATGGGAAATGTCCTCTACCTCGCCGGTGTGATG
ATGATAATTGGTCCCACTCGTTCTGTGCGCTTCTTCTTTCAGAAGCGCAA
AGCAAAAGCTTCTGTGTTTTTCTTCTGTGGTATGGCTTTCGTGCTTTTTG
GTCTGCCAGTGTTCGGCATGGGCATCGAACTGTTTGGGTTCGTCAACTTG
TTTGGCGACTTTTTTCCAGTCGTTATTGCATTCCTGAGACGAGCCCCAGT
GACTGGCAAGCTCCTGGGATTGCCATTGGTGCGAAACGTTGCAGACAGAT
TAGCTGGTTCTACAACCAAGCTACCAGTATAA
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protein sequence of Gchil3870.t1

>Gchil3870.t1 ID=Gchil3870.t1|Name=Gchil3870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=144bp
MSSPFAITDVRKIGIGLTAFGLAFSVLGVALLFDKGLLAMGNVLYLAGVM
MIIGPTRSVRFFFQKRKAKASVFFFCGMAFVLFGLPVFGMGIELFGFVNL
FGDFFPVVIAFLRRAPVTGKLLGLPLVRNVADRLAGSTTKLPV*
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mRNA from alignment at tig00000010_pilon:1126213..1126721-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3870.t1 ID=Gchil3870.t1|Name=Gchil3870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp|location=Sequence derived from alignment at tig00000010_pilon:1126213..1126721- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTCCTTTCGCAATAACGGACGTGCGAAAGATCGGAATCGGTCT
GACCGCGTTCGGCCTTGCGTTTTCCGTTCTTGGTGTGGCGCTTCTCTTCG
ACAAGGGCCTCCTAGCCATGGGAAATGTCCTCTACCTCGCCGGTGTGATG
ATGATAATTGGTCCCACTCGTTCTGTGCGCTTCTTCTTTCAGAAGCGCAA
AGCAAAAGCTTCTGTGTTTTTCTTCTGTGGTATGGCTTTCGTGCTTTTTG
GTCTGCCAGTGTTCGGCATGGGCATCGAACTGTTTGGGTTCGTCAACTTG
TTTGGCGACTTTTTTCCAGTCGTTATTGCATTCCTGAGACGAGCCCCAGT
GACTGGCAAGCTCCTGGGATTGCCATTGGTGCGAAACGTGCGTTTTGCTT
CTCTTTCAATGAATGTTTACCCATTACTGACATGAACTTTTCTTCTTGTA
TTATTCACATACAGGTTGCAGACAGATTAGCTGGTTCTACAACCAAGCTA
CCAGTATAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1126213..1126721-

>Gchil3870.t1 ID=Gchil3870.t1|Name=Gchil3870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=432bp|location=Sequence derived from alignment at tig00000010_pilon:1126213..1126721- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTCCTTTCGCAATAACGGACGTGCGAAAGATCGGAATCGGTCT
GACCGCGTTCGGCCTTGCGTTTTCCGTTCTTGGTGTGGCGCTTCTCTTCG
ACAAGGGCCTCCTAGCCATGGGAAATGTCCTCTACCTCGCCGGTGTGATG
ATGATAATTGGTCCCACTCGTTCTGTGCGCTTCTTCTTTCAGAAGCGCAA
AGCAAAAGCTTCTGTGTTTTTCTTCTGTGGTATGGCTTTCGTGCTTTTTG
GTCTGCCAGTGTTCGGCATGGGCATCGAACTGTTTGGGTTCGTCAACTTG
TTTGGCGACTTTTTTCCAGTCGTTATTGCATTCCTGAGACGAGCCCCAGT
GACTGGCAAGCTCCTGGGATTGCCATTGGTGCGAAACGTTGCAGACAGAT
TAGCTGGTTCTACAACCAAGCTACCAGTATAA
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