Gchil4285.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4285.t1
Unique NameGchil4285.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length278
Homology
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 301 bits (771), Expect = 1.630e-99
Identity = 160/288 (55.56%), Postives = 200/288 (69.44%), Query Frame = 0
Query:    1 MMAFLSGPLSIPLNSPGRHARSMCRCRPPIPRPARVVFSALIDEKKALSEPGSD-----------SQAEPTSLQPIEQERVRKPSFSERPRPYRPSRVSPTGGARNYEDRPRFEADPDATYYTKCSRCSAAYEIDPTVLSSGRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGKNNS 277
            MMAFLSGP  IP N PGR ARS+C  RPP+PRP RV FSALIDE K LSEP  D            ++EP S  P EQ  V            RPSR + +   R +E  PRF  DP+A YYTKC++CSAAYE+DP VL +GR+VACSVC NEWFQKP+RL+ +R +E+F++YPMDRK ELL+++Q+ + + GR    R  R    K+FSVFIGNLP+SV+ +EL E IS+VV PKR+++V D DG SKG+AFADV S +EVDQ+V +LD T + GR IAV+PGK NS
Sbjct:    1 MMAFLSGPPLIPYNVPGRTARSVCSYRPPVPRPPRVFFSALIDESKPLSEPPRDLLTEPLHRDLPKESEPDSALPPEQRSVA-----------RPSRPTHSRDPRRFESPPRFTPDPNAVYYTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKNS 277          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A7S0G725_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G725_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 9.300e-29
Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 0
Query:  103 EADPDATYYTKCSRCSAAYEIDPTVLS-SGRKVACSVCGNEWFQKPERLYTLRTS-EEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGKNNS 277
            + DP+  YY++CS+C A YE+ P VL   G KV CSVC N+W+Q+ ++L  L  + EE  D+P   +++  + S       GRH G         + ++ F+GNL FS + +EL + + +    +    VV+ DGRSKG+AF D  + +++ + ++ LD   L GR I VK G+N+S
Sbjct:   86 DGDPNVVYYSQCSKCGAVYELRPKVLGLEGSKVQCSVCKNQWYQRRDKLMELDPAVEELEDFPESEREKFKRSSPHRGGYNGRHGG---------QFYTAFVGNLSFSTTRDELYDLVKDRDVVR--CHVVEKDGRSKGFAFVDFRTKEQLTKAMDELDGQELGGRQIIVKEGRNSS 251          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A7S3AAQ8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAQ8_9RHOD)

HSP 1 Score: 114 bits (284), Expect = 1.070e-26
Identity = 64/179 (35.75%), Postives = 103/179 (57.54%), Query Frame = 0
Query:  103 EADPDATYYTKCSRCSAAYEIDPTVLS-SGRKVACSVCGNEWFQKPERLYTLRTS-EEFTDYPMDRKDELLQQS--QRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGKNNS 277
            + DPD  YY++CS+C A YE+ P VL   G KV CSVC N+W+Q+ ++L  L  + +E  D+P   ++   + S  + G N  GR  G         + ++ F+GNL F+ + EEL + + +    +    VV+ DGRSKG+AF D  + +++++ ++ LD   L GR I  K G+N+S
Sbjct:   85 DGDPDVVYYSQCSKCKAVYELRPKVLGLDGSKVQCSVCKNQWYQRRDKLMELDPAVDELEDFPESERERFKRSSPSRGGYNGGGRPSG---------QFYTAFVGNLSFNTTREELYDLVKDRDVVR--CHVVEKDGRSKGFAFIDFRTKEQLNKAMDELDGYELGGRQIIFKEGRNSS 252          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A8J2SPH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPH7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.160e-22
Identity = 53/174 (30.46%), Postives = 88/174 (50.57%), Query Frame = 0
Query:  103 EADPDATYYTKCSRCSAAYEIDPTVLS--SGRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGK 274
            + D D  +   C  C A Y ID  +L   +G KV C VCGN WFQ   R+ TL    E  +Y  ++  E + + +    +    P R+R       + ++F+ NLPF  S +++    + V       VV+D DGRS+GY F ++    + ++L++    + + GR++ V+PGK
Sbjct:   93 DTDEDVQHIITCGSCKAVYAIDKDILGKGAGAKVQCEVCGNVWFQATARVNTLFDGFELKEYDAEKAQEAIDKQKARAKEAADRPPRKRG------AATLFVANLPFRYSDDDVVALFAEVAPITSAQVVMDDDGRSRGYGFVEIEVAADAERLISEFHGSDVGGRDLIVRPGK 260          
BLAST of Gchil4285.t1 vs. uniprot
Match: R1FCJ1_EMIHU (RRM domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCJ1_EMIHU)

HSP 1 Score: 94.4 bits (233), Expect = 1.590e-19
Identity = 55/163 (33.74%), Postives = 81/163 (49.69%), Query Frame = 0
Query:  114 CSRCSAAYEIDPTVLS--SGRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGK 274
            CS C A+Y ++   L   +G++V CS C +EWFQ   RL  L    E  +YP + KD +               G+  +   A+ +F  ++GNLPF V  EEL +          V V+ D DGRS+G+AF ++   +E    V AL+   L+GR I V  G+
Sbjct:   51 CSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEMKDRMA-------------AGKPAE---ARAAFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEGR 197          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A7S0Z3R8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3R8_9CRYP)

HSP 1 Score: 93.6 bits (231), Expect = 5.330e-19
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = 0
Query:  111 YTKCSRCSAAYEIDPTVLSSGRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVD-ADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVK 271
            Y  C  C A+Y IDP  L +GRKV C+VC + WFQ   RL T+++S++   +P++   E           + +  G    R   + + ++F+GN+PFS++ ++LKE  +       V+++ D A GR KGY F D    D      + +D   + GR +AVK
Sbjct:   99 YATCGSCKASYIIDPEELGAGRKVKCAVCEHTWFQSAARLQTVQSSDKVNPFPVEEFKE-----------KQKALGDIVTRHERKGAVTLFVGNMPFSINEDKLKEVFAEYGEVASVSIICDPATGRPKGYGFVDYVEKDCGQMACDNIDGLLVDGRELAVK 249          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A7S1TD30_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD30_9RHOD)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-17
Identity = 59/193 (30.57%), Postives = 95/193 (49.22%), Query Frame = 0
Query:   89 PTGGARNYE---DRPRFEADPDATYYTKCSRCSAAYEIDPTVLSS-GRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQ----SQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPG 273
            P G A + E   D+ + + +   T YT+C RC + + +    L   GRKV C VC + WFQ   RL  L   E   D     +D  +++    S+R  +  G   G           F++F+GNLPFSVS ++L+   S     +RV +    +GRS+G+AF DV S +++   +  +    + GR ++V+ G
Sbjct:   76 PVGEATDEEGDADQGKTQEEVLMTTYTECVRCGSKFAVSDRELGDKGRKVQCGVCKHVWFQHTNRLSELAEGESLRDMTPAEQDIAIERTKTRSRRATSDAGASEGG--------SQFTLFVGNLPFSVSEDDLRVIFSQHCKVQRVHIAT-TEGRSRGFAFVDVASEEDMKLAIEKVSGMDVGGREVSVRQG 259          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A7S0J785_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J785_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 1.260e-16
Identity = 52/161 (32.30%), Postives = 75/161 (46.58%), Query Frame = 0
Query:  114 CSRCSAAYEIDPTVLSSGRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGK 274
            C  C A+YEI  + +  GR+V CS CG+ W+Q   RL +L  + E  DYP   K  L               G   +       F  ++GNLPF  S EEL++          V ++VD DGR +G+ F ++   ++    V AL+   L GR + V  GK
Sbjct:   76 CGTCKASYEIRKSDVGEGRRVKCSNCGHTWYQTAARLSSLPRAMELIDYPAAMKARL-------------EAGLPAE---MVAGFRAYVGNLPFGTSEEELEQLFEPFGNIVGVDILVDEDGRPRGFGFVNLEKEEDGKAAVEALNGHKLNGRPLTVSEGK 220          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A7S3EQA3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EQA3_9RHOD)

HSP 1 Score: 83.6 bits (205), Expect = 2.640e-16
Identity = 50/150 (33.33%), Postives = 84/150 (56.00%), Query Frame = 0
Query:  131 GRKVACSVCGNEWFQKPERLYTLRTS-EEFTDYPMDRKDELLQQS--QRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGKNNS 277
            G KV CSVC N+W+Q+ ++L  L  + +E  D+P   ++   + S  + G N  GR  G         + ++ F+GNL F+ + EEL + + +    +    VV+ DGRSKG+AF D  + +++++ ++ LD   L GR I  K G+N+S
Sbjct:    8 GSKVQCSVCKNQWYQRRDKLMELDPAVDELEDFPESERERFKRSSPSRGGYNGGGRPSG---------QFYTAFVGNLSFNTTREELYDLVKDRDVVR--CHVVEKDGRSKGFAFIDFRTKEQLNKAMDELDGYELGGRQIIFKEGRNSS 146          
BLAST of Gchil4285.t1 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-15
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 0
Query:  111 YTKCSRCSAAYEIDPTVLSS---GRKVACSVCGNEWFQKPERLYTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSVFIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDEVDQLVNALDNTSLKGRNIAVKPGKN 275
            Y +C RCS ++ +    L     GR+V CSVCG+ W+Q  ++L+ +R   E  + P      +            R+    RD ++   S  +++GNL F V+ E+L E  S V     V ++ D  GRSKG+AF  + + +  ++ +  LD   + GRN+ V+   N
Sbjct:   66 YARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGFELVELPQSDVSRIE-----------RNIAADRDPRFTGDS-KLYVGNLDFKVTEEDLFEEFSKVDEVGDVTIITDDSGRSKGFAFVTMLTKEGGEKALEKLDGEEVFGRNLNVREPNN 221          
The following BLAST results are available for this feature:
BLAST of Gchil4285.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J103_9FLOR1.630e-9955.56Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
A0A7S0G725_9RHOD9.300e-2936.16Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3AAQ8_9RHOD1.070e-2635.75Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8J2SPH7_9STRA3.160e-2230.46Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
R1FCJ1_EMIHU1.590e-1933.74RRM domain-containing protein n=2 Tax=Emiliania hu... [more]
A0A7S0Z3R8_9CRYP5.330e-1932.72Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1TD30_9RHOD1.170e-1730.57Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0J785_9EUKA1.260e-1632.30Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3EQA3_9RHOD2.640e-1633.33Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A6V2PYU0_9STRA1.390e-1529.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 199..271
e-value: 7.3E-15
score: 65.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 200..268
e-value: 3.1E-12
score: 46.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 198..275
score: 14.862814
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 145..277
e-value: 8.1E-20
score: 73.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..190
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 198..275
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..277
NoneNo IPR availableCDDcd00590RRM_SFcoord: 200..271
e-value: 6.6067E-17
score: 71.5673
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 172..276

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1878122..1878955 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4285.t1Gchil4285.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 1878122..1878955 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4285.t1 ID=Gchil4285.t1|Name=Gchil4285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=278bp
MMAFLSGPLSIPLNSPGRHARSMCRCRPPIPRPARVVFSALIDEKKALSE
PGSDSQAEPTSLQPIEQERVRKPSFSERPRPYRPSRVSPTGGARNYEDRP
RFEADPDATYYTKCSRCSAAYEIDPTVLSSGRKVACSVCGNEWFQKPERL
YTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSV
FIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDE
VDQLVNALDNTSLKGRNIAVKPGKNNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf