Gchil4285.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4285.t1
Unique NameGchil4285.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1878122..1878955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G7E1
PFAMsPALP,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Evalue8.01e-23
EggNOG OGsKOG0145@1|root,KOG0145@2759|Eukaryota
EC4.3.1.17,4.3.1.19
DescriptionRNA binding
COG categoryDU
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4285Gchil4285Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1878122..1878955 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4285.t1.start1Gchil4285.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1878122..1878124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4285.t1.CDS1Gchil4285.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1878122..1878955 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4285.t1.exon1Gchil4285.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1878122..1878955 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4285.t1.stop1Gchil4285.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1878953..1878955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4285.t1Gchil4285.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1878122..1878955 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4285.t1 ID=Gchil4285.t1|Name=Gchil4285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=278bp
MMAFLSGPLSIPLNSPGRHARSMCRCRPPIPRPARVVFSALIDEKKALSE
PGSDSQAEPTSLQPIEQERVRKPSFSERPRPYRPSRVSPTGGARNYEDRP
RFEADPDATYYTKCSRCSAAYEIDPTVLSSGRKVACSVCGNEWFQKPERL
YTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSV
FIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDE
VDQLVNALDNTSLKGRNIAVKPGKNNS*
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spliced messenger RNA

>Gchil4285.t1 ID=Gchil4285.t1|Name=Gchil4285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00004373_pilon:1878122..1878955+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTTTTCTGAGCGGTCCTCTGTCGATTCCTCTCAATTCGCCCGG
TCGTCATGCGCGTTCCATGTGCAGGTGTCGCCCCCCGATTCCGCGGCCGG
CACGTGTCGTGTTCTCCGCTTTAATTGATGAGAAGAAAGCGCTTAGTGAA
CCCGGCAGTGACAGCCAAGCCGAACCAACCAGTCTGCAACCAATTGAACA
AGAAAGGGTGAGAAAGCCCTCATTCTCGGAGCGCCCTCGCCCCTACCGGC
CGTCGCGAGTGTCCCCAACAGGCGGGGCTCGCAACTATGAAGATCGCCCT
CGATTCGAGGCCGACCCTGATGCTACATACTACACCAAATGTTCAAGGTG
CAGCGCGGCATATGAAATAGACCCCACAGTGCTGAGCAGCGGAAGAAAGG
TTGCGTGTAGTGTTTGCGGTAATGAATGGTTTCAAAAGCCGGAACGTTTG
TACACCTTGCGTACAAGTGAAGAGTTCACAGACTACCCCATGGACAGGAA
GGACGAGCTTTTGCAACAGAGTCAACGTGGACAGAATCAGCGTGGTCGTC
ATCCGGGAAGACGTCGCGATCGCCAGTATGCGCAGAAGTCCTTCTCCGTA
TTCATTGGTAATTTACCATTCTCAGTGTCTACTGAGGAGCTGAAGGAGTT
TATTTCGAACGTTGTGACTCCGAAACGCGTTGCTGTGGTTGTGGACGCCG
ACGGTAGATCCAAAGGATATGCGTTTGCCGATGTGAATTCAGGGGATGAA
GTCGACCAGCTTGTTAATGCTCTTGACAACACATCCTTGAAGGGTAGAAA
TATTGCCGTCAAACCAGGAAAGAACAACTCCTAG
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protein sequence of Gchil4285.t1

>Gchil4285.t1 ID=Gchil4285.t1|Name=Gchil4285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=278bp
MMAFLSGPLSIPLNSPGRHARSMCRCRPPIPRPARVVFSALIDEKKALSE
PGSDSQAEPTSLQPIEQERVRKPSFSERPRPYRPSRVSPTGGARNYEDRP
RFEADPDATYYTKCSRCSAAYEIDPTVLSSGRKVACSVCGNEWFQKPERL
YTLRTSEEFTDYPMDRKDELLQQSQRGQNQRGRHPGRRRDRQYAQKSFSV
FIGNLPFSVSTEELKEFISNVVTPKRVAVVVDADGRSKGYAFADVNSGDE
VDQLVNALDNTSLKGRNIAVKPGKNNS*
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mRNA from alignment at tig00004373_pilon:1878122..1878955+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4285.t1 ID=Gchil4285.t1|Name=Gchil4285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00004373_pilon:1878122..1878955+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCTTTTCTGAGCGGTCCTCTGTCGATTCCTCTCAATTCGCCCGG
TCGTCATGCGCGTTCCATGTGCAGGTGTCGCCCCCCGATTCCGCGGCCGG
CACGTGTCGTGTTCTCCGCTTTAATTGATGAGAAGAAAGCGCTTAGTGAA
CCCGGCAGTGACAGCCAAGCCGAACCAACCAGTCTGCAACCAATTGAACA
AGAAAGGGTGAGAAAGCCCTCATTCTCGGAGCGCCCTCGCCCCTACCGGC
CGTCGCGAGTGTCCCCAACAGGCGGGGCTCGCAACTATGAAGATCGCCCT
CGATTCGAGGCCGACCCTGATGCTACATACTACACCAAATGTTCAAGGTG
CAGCGCGGCATATGAAATAGACCCCACAGTGCTGAGCAGCGGAAGAAAGG
TTGCGTGTAGTGTTTGCGGTAATGAATGGTTTCAAAAGCCGGAACGTTTG
TACACCTTGCGTACAAGTGAAGAGTTCACAGACTACCCCATGGACAGGAA
GGACGAGCTTTTGCAACAGAGTCAACGTGGACAGAATCAGCGTGGTCGTC
ATCCGGGAAGACGTCGCGATCGCCAGTATGCGCAGAAGTCCTTCTCCGTA
TTCATTGGTAATTTACCATTCTCAGTGTCTACTGAGGAGCTGAAGGAGTT
TATTTCGAACGTTGTGACTCCGAAACGCGTTGCTGTGGTTGTGGACGCCG
ACGGTAGATCCAAAGGATATGCGTTTGCCGATGTGAATTCAGGGGATGAA
GTCGACCAGCTTGTTAATGCTCTTGACAACACATCCTTGAAGGGTAGAAA
TATTGCCGTCAAACCAGGAAAGAACAACTCCTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1878122..1878955+

>Gchil4285.t1 ID=Gchil4285.t1|Name=Gchil4285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00004373_pilon:1878122..1878955+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCTTTTCTGAGCGGTCCTCTGTCGATTCCTCTCAATTCGCCCGG
TCGTCATGCGCGTTCCATGTGCAGGTGTCGCCCCCCGATTCCGCGGCCGG
CACGTGTCGTGTTCTCCGCTTTAATTGATGAGAAGAAAGCGCTTAGTGAA
CCCGGCAGTGACAGCCAAGCCGAACCAACCAGTCTGCAACCAATTGAACA
AGAAAGGGTGAGAAAGCCCTCATTCTCGGAGCGCCCTCGCCCCTACCGGC
CGTCGCGAGTGTCCCCAACAGGCGGGGCTCGCAACTATGAAGATCGCCCT
CGATTCGAGGCCGACCCTGATGCTACATACTACACCAAATGTTCAAGGTG
CAGCGCGGCATATGAAATAGACCCCACAGTGCTGAGCAGCGGAAGAAAGG
TTGCGTGTAGTGTTTGCGGTAATGAATGGTTTCAAAAGCCGGAACGTTTG
TACACCTTGCGTACAAGTGAAGAGTTCACAGACTACCCCATGGACAGGAA
GGACGAGCTTTTGCAACAGAGTCAACGTGGACAGAATCAGCGTGGTCGTC
ATCCGGGAAGACGTCGCGATCGCCAGTATGCGCAGAAGTCCTTCTCCGTA
TTCATTGGTAATTTACCATTCTCAGTGTCTACTGAGGAGCTGAAGGAGTT
TATTTCGAACGTTGTGACTCCGAAACGCGTTGCTGTGGTTGTGGACGCCG
ACGGTAGATCCAAAGGATATGCGTTTGCCGATGTGAATTCAGGGGATGAA
GTCGACCAGCTTGTTAATGCTCTTGACAACACATCCTTGAAGGGTAGAAA
TATTGCCGTCAAACCAGGAAAGAACAACTCCTAG
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