Gchil4371.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4371.t1
Unique NameGchil4371.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length423
Homology
BLAST of Gchil4371.t1 vs. uniprot
Match: A0A2V3J1X8_9FLOR (PAPA-1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1X8_9FLOR)

HSP 1 Score: 440 bits (1132), Expect = 5.230e-150
Identity = 306/410 (74.63%), Postives = 340/410 (82.93%), Query Frame = 0
Query:    5 ESYSSDEVNKLPAVPRVRRSSGAKPPVPRPSRSASKSSKGHAKVAEKRPVRQSTRRRVAKRSFREDSANSE-DDGNESYIEVRRTSRRSQKTRKVIDDXXXXXXXXXXXXAILGNENKDELYEKDDNEMSAGMMDDXXXXXXXXXXXXXXXXXXXXXXXXVSKSASVLVSRSKKRRKTIRESSSDSRDVDREDENGXXXXXXXXXXXXXXSVDGEGNELIKRQKDILAQLEAEVGKDDSEDFKSESSDEPKPKRSRRLTSRQRALQGENVKLEYSKLDSPKAKKKDVQEDWDHDEEMEMKRQQKARLRQMVSEKRNKEKRAAMVDKVLRGVTSKRKKFTLATEARAAQIEDRLTQNEMRDGCMRYVSNREGCTLSIPKDAVVPPYLKKSLKAVYPPLCKRDPKTGKREFS 413
            ES+SSDEVNKLPAVPRVRRSSGAKPP PR SRSASKSSK  + +AEKRP+RQS RRR++KRSFREDS NSE +D +ES++ VRRTSRR QKTRKVI+ XXXXXX       I+  E+KD+   K++NE S G+ D+XXXXXXXXXXXXXXXXXXXXXXXX  KSAS+   R+KKRRKTIRESSSD R         XXXXXXXXX     S + EG E+IK Q DILAQLE E   +DSEDFKSESS+E KP +SRRLTSRQRALQGENVKLEYSKL+SPK KKK+VQE+WDHDEEME+KRQQKARLRQMVSEKRN+EKRAAMVDKVLRGVTSKRKKFTLATEARAAQ+E RL QNEMRDGCMRYVSN+ G TLSIPKDA  P YL +SLKAVYPP C+RDPKTGKR  S
Sbjct:    2 ESFSSDEVNKLPAVPRVRRSSGAKPPAPRSSRSASKSSKRESSIAEKRPIRQSARRRISKRSFREDSVNSEYEDNDESHVVVRRTSRRIQKTRKVIEXXXXXXX------XIVHTEDKDDSETKEENESSPGIGDEXXXXXXXXXXXXXXXXXXXXXXXXX-KSASIYSRRAKKRRKTIRESSSDGRG--NSXXXXXXXXXXXXXDLGNESAEAEGVEIIKGQNDILAQLEEEGNDNDSEDFKSESSEEVKPMKSRRLTSRQRALQGENVKLEYSKLESPKTKKKEVQEEWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLAQNEMRDGCMRYVSNKNGITLSIPKDASTPSYLGRSLKAVYPPKCERDPKTGKRLLS 402          
BLAST of Gchil4371.t1 vs. uniprot
Match: R7QG84_CHOCR (PAPA-1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG84_CHOCR)

HSP 1 Score: 200 bits (508), Expect = 1.390e-56
Identity = 116/189 (61.38%), Postives = 145/189 (76.72%), Query Frame = 0
Query:  229 ILAQLEAEVGKDDSED--FKSESSDEPKPKRSRRLTSRQRALQGENVKLEYSKLDSPKAKKKDVQED-WDHDEEMEMKRQQKARLRQMVSEKRNKEKRAAMVDKVLRGVTSKRKKFTLATEARAAQIEDRLTQNEMRDGCMRYVSNREGCTLSIPKDAVVPPYLKKSLKAVYPPLCKRDPKTGKREFSN 414
            ILA+LE     DD  D     +S  E   K++ RLT RQRA+QGENVKLEY+KL+SPKAKK    E+ W +DEE E+K+QQ+ARLRQM+ EKRNKEKRAAMVDKVLRGVTSKRKK T+A+E R A++  RL++NEMR GC+R+VSN  G +LSIP++   P YL++SLKAVYP  C RDP+TGKR F++
Sbjct:  193 ILAELEEAEAMDDGSDPLDSDDSVVEKGTKKTERLTRRQRAMQGENVKLEYTKLESPKAKKAAPPEEAWSNDEEAELKKQQRARLRQMIHEKRNKEKRAAMVDKVLRGVTSKRKKLTMASEERVAKVGTRLSKNEMRKGCIRFVSNPTGTSLSIPEEDDAPAYLQESLKAVYPKPCLRDPRTGKRIFTD 381          
BLAST of Gchil4371.t1 vs. uniprot
Match: A0A1X6PFD6_PORUM (PAPA-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFD6_PORUM)

HSP 1 Score: 85.9 bits (211), Expect = 9.940e-15
Identity = 57/126 (45.24%), Postives = 77/126 (61.11%), Query Frame = 0
Query:  292 EDWDHD---EEMEMKRQQKARLRQMVSEKRNKEKRAAMVDKVLRGVTSKRKKFTLATEARAAQIEDRLTQNEMRDGCMRYVSNREGCTLSIPKDAVVPPYLKKSLKAVYPPL-CKRDPKTGKREFS 413
            ED D D   EE  ++++Q ARLR++  EK+ +EKR A +++VLRGVT+KRKK   A+EA  A   D L  N  R G +R++SNR G +LS      +PP +   L    PP  C  DPKTGKR F+
Sbjct:  248 EDGDGDADAEEAVLRKEQVARLRRITHEKKRQEKRVATIERVLRGVTTKRKKAVAASEAVVADARDSLAVNRPRPGAVRHISNRGGESLSFVAGDALPPLVAVGLPRRAPPRPCTWDPKTGKRVFA 373          
The following BLAST results are available for this feature:
BLAST of Gchil4371.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J1X8_9FLOR5.230e-15074.63PAPA-1 domain-containing protein n=1 Tax=Gracilari... [more]
R7QG84_CHOCR1.390e-5661.38PAPA-1 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A1X6PFD6_PORUM9.940e-1545.24PAPA-1 domain-containing protein n=1 Tax=Porphyra ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 300..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..162
IPR006880INO80 complex subunit B-like conserved regionSMARTSM01406PAPA_1_2coord: 299..383
e-value: 8.8E-6
score: 35.2
IPR006880INO80 complex subunit B-like conserved regionPFAMPF04795PAPA-1coord: 299..382
e-value: 2.5E-12
score: 47.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2367996..2369264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4371.t1Gchil4371.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 2367996..2369264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4371.t1 ID=Gchil4371.t1|Name=Gchil4371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=423bp
MSPQESYSSDEVNKLPAVPRVRRSSGAKPPVPRPSRSASKSSKGHAKVAE
KRPVRQSTRRRVAKRSFREDSANSEDDGNESYIEVRRTSRRSQKTRKVID
DDDDDEEDEDEDEAILGNENKDELYEKDDNEMSAGMMDDDDDDHDHNDDD
DDDDDIDMEDDDDVSKSASVLVSRSKKRRKTIRESSSDSRDVDREDENGN
ADGNEDSNDFTNDSVDGEGNELIKRQKDILAQLEAEVGKDDSEDFKSESS
DEPKPKRSRRLTSRQRALQGENVKLEYSKLDSPKAKKKDVQEDWDHDEEM
EMKRQQKARLRQMVSEKRNKEKRAAMVDKVLRGVTSKRKKFTLATEARAA
QIEDRLTQNEMRDGCMRYVSNREGCTLSIPKDAVVPPYLKKSLKAVYPPL
CKRDPKTGKREFSNVSTSASAM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006880INO80B_C