Gchil4371.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4371.t1
Unique NameGchil4371.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2367996..2369264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4371Gchil4371Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2367996..2369264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4371.t1.start1Gchil4371.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2367996..2367998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4371.t1.CDS1Gchil4371.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2367996..2369264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4371.t1.exon1Gchil4371.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2367996..2369264 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4371.t1.stop1Gchil4371.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2369262..2369264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4371.t1Gchil4371.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2367996..2369264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4371.t1 ID=Gchil4371.t1|Name=Gchil4371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp
MSPQESYSSDEVNKLPAVPRVRRSSGAKPPVPRPSRSASKSSKGHAKVAE
KRPVRQSTRRRVAKRSFREDSANSEDDGNESYIEVRRTSRRSQKTRKVID
DDDDDEEDEDEDEAILGNENKDELYEKDDNEMSAGMMDDDDDDHDHNDDD
DDDDDIDMEDDDDVSKSASVLVSRSKKRRKTIRESSSDSRDVDREDENGN
ADGNEDSNDFTNDSVDGEGNELIKRQKDILAQLEAEVGKDDSEDFKSESS
DEPKPKRSRRLTSRQRALQGENVKLEYSKLDSPKAKKKDVQEDWDHDEEM
EMKRQQKARLRQMVSEKRNKEKRAAMVDKVLRGVTSKRKKFTLATEARAA
QIEDRLTQNEMRDGCMRYVSNREGCTLSIPKDAVVPPYLKKSLKAVYPPL
CKRDPKTGKREFSNVSTSASAM*
back to top

spliced messenger RNA

>Gchil4371.t1 ID=Gchil4371.t1|Name=Gchil4371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00004373_pilon:2367996..2369264+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCACAGGAATCTTACAGCAGTGACGAAGTCAATAAACTCCCCGC
GGTACCTCGTGTTCGTCGAAGCAGTGGCGCTAAGCCCCCAGTTCCGCGAC
CAAGTCGCTCCGCAAGTAAGAGTAGTAAAGGACACGCAAAGGTCGCTGAA
AAACGGCCTGTTCGACAATCAACGCGTCGCCGCGTTGCGAAGAGAAGTTT
TCGAGAAGACTCCGCGAACAGCGAAGACGATGGAAATGAATCCTACATTG
AGGTTCGACGCACATCGCGGCGCTCACAAAAAACCCGAAAGGTTATAgac
gacgacgatgacgacgaagaggatgaggatgaggatgaAGCCATCCTCGG
TAATGAGAATAAAGACGAACTCTATGAGAAAGATGATAATGAAATGAGCG
CGGGgatgatggatgatgacgatgacgatcatgatcataatgatgatgat
gatgatgatgatgaCATTGACATGGAGGATGACGACGATGTTTCGAAGAG
CGCATCTGTGTTGGTTTCGCGCTCCAAGAAAAGACGCAAGACCATCAGGG
AGAGTAGTAGTGACAGCCGAGATGTTGATCGAGAAGATGAGAACGGGAAT
GCAGATGGAAACGAAGATAGCAACGATTTCACAAACGATAGTGTTGACGG
CGAAGGCAACGAACTGATCAAGAGACAGAAAGACATCCTCGCCCAGTTAG
AGGCAGAAGTTGGAAAAGATGATTCTGAAGACTTCAAGAGTGAATCTTCC
GATGAGCCGAAGCCAAAGAGATCAAGAAGGCTTACAAGCAGGCAAAGGGC
ATTACAAGGTGAGAATGTGAAGCTTGAGTATTCGAAGCTCGATTCTCCAA
AGGCTAAGAAGAAGGATGTTCAAGAAGATTGGGACCATGACGAGGAAATG
GAGATGAAGAGACAGCAGAAGGCGAGACTTCGCCAGATGGTGTCGGAAAA
AAGGAACAAGGAAAAGAGAGCAGCTATGGTGGACAAAGTATTGCGAGGTG
TGACTTCTAAAAGAAAGAAGTTCACCCTGGCGACTGAAGCAAGAGCTGCG
CAGATTGAAGATCGTCTAACTCAGAATGAGATGCGGGATGGATGCATGAG
GTACGTCAGCAATCGAGAGGGATGCACGCTTTCCATCCCGAAAGATGCTG
TCGTTCCCCCATACTTGAAGAAAAGTCTCAAAGCCGTTTATCCTCCGTTA
TGCAAACGAGATCCCAAGACAGGAAAGAGAGAGTTTTCTAACGTTTCAAC
ATCTGCCAGTGCTATGTGA
back to top

protein sequence of Gchil4371.t1

>Gchil4371.t1 ID=Gchil4371.t1|Name=Gchil4371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=423bp
MSPQESYSSDEVNKLPAVPRVRRSSGAKPPVPRPSRSASKSSKGHAKVAE
KRPVRQSTRRRVAKRSFREDSANSEDDGNESYIEVRRTSRRSQKTRKVID
DDDDDEEDEDEDEAILGNENKDELYEKDDNEMSAGMMDDDDDDHDHNDDD
DDDDDIDMEDDDDVSKSASVLVSRSKKRRKTIRESSSDSRDVDREDENGN
ADGNEDSNDFTNDSVDGEGNELIKRQKDILAQLEAEVGKDDSEDFKSESS
DEPKPKRSRRLTSRQRALQGENVKLEYSKLDSPKAKKKDVQEDWDHDEEM
EMKRQQKARLRQMVSEKRNKEKRAAMVDKVLRGVTSKRKKFTLATEARAA
QIEDRLTQNEMRDGCMRYVSNREGCTLSIPKDAVVPPYLKKSLKAVYPPL
CKRDPKTGKREFSNVSTSASAM*
back to top

mRNA from alignment at tig00004373_pilon:2367996..2369264+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4371.t1 ID=Gchil4371.t1|Name=Gchil4371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00004373_pilon:2367996..2369264+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCACAGGAATCTTACAGCAGTGACGAAGTCAATAAACTCCCCGC
GGTACCTCGTGTTCGTCGAAGCAGTGGCGCTAAGCCCCCAGTTCCGCGAC
CAAGTCGCTCCGCAAGTAAGAGTAGTAAAGGACACGCAAAGGTCGCTGAA
AAACGGCCTGTTCGACAATCAACGCGTCGCCGCGTTGCGAAGAGAAGTTT
TCGAGAAGACTCCGCGAACAGCGAAGACGATGGAAATGAATCCTACATTG
AGGTTCGACGCACATCGCGGCGCTCACAAAAAACCCGAAAGGTTATAgac
gacgacgatgacgacgaagaggatgaggatgaggatgaAGCCATCCTCGG
TAATGAGAATAAAGACGAACTCTATGAGAAAGATGATAATGAAATGAGCG
CGGGgatgatggatgatgacgatgacgatcatgatcataatgatgatgat
gatgatgatgatgaCATTGACATGGAGGATGACGACGATGTTTCGAAGAG
CGCATCTGTGTTGGTTTCGCGCTCCAAGAAAAGACGCAAGACCATCAGGG
AGAGTAGTAGTGACAGCCGAGATGTTGATCGAGAAGATGAGAACGGGAAT
GCAGATGGAAACGAAGATAGCAACGATTTCACAAACGATAGTGTTGACGG
CGAAGGCAACGAACTGATCAAGAGACAGAAAGACATCCTCGCCCAGTTAG
AGGCAGAAGTTGGAAAAGATGATTCTGAAGACTTCAAGAGTGAATCTTCC
GATGAGCCGAAGCCAAAGAGATCAAGAAGGCTTACAAGCAGGCAAAGGGC
ATTACAAGGTGAGAATGTGAAGCTTGAGTATTCGAAGCTCGATTCTCCAA
AGGCTAAGAAGAAGGATGTTCAAGAAGATTGGGACCATGACGAGGAAATG
GAGATGAAGAGACAGCAGAAGGCGAGACTTCGCCAGATGGTGTCGGAAAA
AAGGAACAAGGAAAAGAGAGCAGCTATGGTGGACAAAGTATTGCGAGGTG
TGACTTCTAAAAGAAAGAAGTTCACCCTGGCGACTGAAGCAAGAGCTGCG
CAGATTGAAGATCGTCTAACTCAGAATGAGATGCGGGATGGATGCATGAG
GTACGTCAGCAATCGAGAGGGATGCACGCTTTCCATCCCGAAAGATGCTG
TCGTTCCCCCATACTTGAAGAAAAGTCTCAAAGCCGTTTATCCTCCGTTA
TGCAAACGAGATCCCAAGACAGGAAAGAGAGAGTTTTCTAACGTTTCAAC
ATCTGCCAGTGCTATGTGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:2367996..2369264+

>Gchil4371.t1 ID=Gchil4371.t1|Name=Gchil4371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00004373_pilon:2367996..2369264+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCACAGGAATCTTACAGCAGTGACGAAGTCAATAAACTCCCCGC
GGTACCTCGTGTTCGTCGAAGCAGTGGCGCTAAGCCCCCAGTTCCGCGAC
CAAGTCGCTCCGCAAGTAAGAGTAGTAAAGGACACGCAAAGGTCGCTGAA
AAACGGCCTGTTCGACAATCAACGCGTCGCCGCGTTGCGAAGAGAAGTTT
TCGAGAAGACTCCGCGAACAGCGAAGACGATGGAAATGAATCCTACATTG
AGGTTCGACGCACATCGCGGCGCTCACAAAAAACCCGAAAGGTTATAgac
gacgacgatgacgacgaagaggatgaggatgaggatgaAGCCATCCTCGG
TAATGAGAATAAAGACGAACTCTATGAGAAAGATGATAATGAAATGAGCG
CGGGgatgatggatgatgacgatgacgatcatgatcataatgatgatgat
gatgatgatgatgaCATTGACATGGAGGATGACGACGATGTTTCGAAGAG
CGCATCTGTGTTGGTTTCGCGCTCCAAGAAAAGACGCAAGACCATCAGGG
AGAGTAGTAGTGACAGCCGAGATGTTGATCGAGAAGATGAGAACGGGAAT
GCAGATGGAAACGAAGATAGCAACGATTTCACAAACGATAGTGTTGACGG
CGAAGGCAACGAACTGATCAAGAGACAGAAAGACATCCTCGCCCAGTTAG
AGGCAGAAGTTGGAAAAGATGATTCTGAAGACTTCAAGAGTGAATCTTCC
GATGAGCCGAAGCCAAAGAGATCAAGAAGGCTTACAAGCAGGCAAAGGGC
ATTACAAGGTGAGAATGTGAAGCTTGAGTATTCGAAGCTCGATTCTCCAA
AGGCTAAGAAGAAGGATGTTCAAGAAGATTGGGACCATGACGAGGAAATG
GAGATGAAGAGACAGCAGAAGGCGAGACTTCGCCAGATGGTGTCGGAAAA
AAGGAACAAGGAAAAGAGAGCAGCTATGGTGGACAAAGTATTGCGAGGTG
TGACTTCTAAAAGAAAGAAGTTCACCCTGGCGACTGAAGCAAGAGCTGCG
CAGATTGAAGATCGTCTAACTCAGAATGAGATGCGGGATGGATGCATGAG
GTACGTCAGCAATCGAGAGGGATGCACGCTTTCCATCCCGAAAGATGCTG
TCGTTCCCCCATACTTGAAGAAAAGTCTCAAAGCCGTTTATCCTCCGTTA
TGCAAACGAGATCCCAAGACAGGAAAGAGAGAGTTTTCTAACGTTTCAAC
ATCTGCCAGTGCTATGTGA
back to top