Gchil3905.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3905.t1
Unique Name	Gchil3905.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	733

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1317291..1319489 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3649.evm.model.supercontig_108.55
PFAMs	RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13192
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Evalue	2.42e-05
EggNOG OGs	KOG2135@1\|root,KOG2135@2759\|Eukaryota,37KMJ@33090\|Viridiplantae,3GFX7@35493\|Streptophyta,3HN9P@3699\|Brassicales
Description	Zinc finger CCCH domain-containing protein
COG category	A
BRITE	ko00000,ko01009,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3905	Gchil3905	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1317291..1319489 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3905.t1.start1	Gchil3905.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1317291..1317293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3905.t1.CDS1	Gchil3905.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1317291..1319489 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3905.t1.exon1	Gchil3905.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1317291..1319489 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3905.t1.stop1	Gchil3905.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1319487..1319489 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3905.t1	Gchil3905.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1317291..1319489 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1317291..1319489+
coding sequence from alignment at tig00000010_pilon:1317291..1319489+

mRNA sequence

>Gchil3905.t1 ID=Gchil3905.t1|Name=Gchil3905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=733bp
MATSARAWSVAKLKELNFEGDAEALGQYIDAVIENNREAENGDPDLLRAQ
VTRDLDDFLADSAAAAFVDALMRHLSPPAPASPPAPAAPPARAPASANGA
PPPPNHPSHARPSHVDDKLRQPLSETRRRSPRRDRPEPERQDAAQRRSDR
QERRPSRQTVMQRLGDRAEDPREQHKRQRARDPKPLRDPRDTRQQPRLAR
DRDSDRERDRPNVASRAPRSTSGDVWDRLGSRNVKRPREEPMDMRDRREA
DERDAKHRRGPDGGRRRSDSFDRQRMPNDRLRRDDRAPRITTPPYDQNGK
APPPWPPNLVGPMSLMPPPFPGMLPPVPPLLPNMGGGGRGRGGYRARDHG
RPLPQNGVSNPANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQ
RFLPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRL
TDDGTLVEEEQAKKHSREEEEKAPLTPTKVEVRATPPDHRARYDMEKEKK
IRQAAEEKERKMKEAEEDLRRKKEQIAELRKQQDERIAELKARKQQLLAR
QHEIFAKIPCANDKEKLKMKNELVAIQEETLGVQKELKPKPLIAPKAEAM
KRFAPASSVYRVDNRPKQVLVRGAKDDVVPDSAASAFHDTERAKQFGKNE
WLLTFLSRRAAESAIRAQKVLKRCFGNEASAAIVSSAMLETIRQSNEVHT
NTAAHSSPPDVKADVSMMDDNVKPRSASAVAE*

spliced messenger RNA

>Gchil3905.t1 ID=Gchil3905.t1|Name=Gchil3905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at tig00000010_pilon:1317291..1319489+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCTCTGCACGCGCTTGGTCCGTTGCCAAGCTCAAAGAGCTCAA
CTTTGAAGGCGATGCCGAGGCTCTTGGCCAGTACATTGATGCCGTCATCG
AAAACAATCGCGAGGCCGAGAACGGAGACCCGGACCTTCTCCGCGCCCAG
GTCACGCGCGACCTCGATGACTTTCTGGCAGATTCGGCAGCCGCCGCTTT
TGTAGACGCTCTCATGCGACACCTCTCCCCGCCCGCACCTGCTTCCCCGC
CAGCCCCTGCTGCCCCACCTGCCCGCGCCCCTGCCTCCGCCAACGGCGCT
CCGCCCCCGCCTAACCACCCGTCGCACGCGCGCCCATCGCACGTCGACGA
CAAGTTGCGCCAGCCTCTGTCTGAGACCCGTCGCCGCTCGCCGCGCAGAG
ATCGCCCCGAGCCCGAGCGACAGGACGCCGCTCAACGTCGCTCTGACCGT
CAGGAGCGACGCCCCTCCAGACAGACCGTCATGCAGCGCTTGGGCGACCG
TGCTGAAGATCCGAGGGAGCAACATAAGCGTCAACGCGCGAGAGATCCCA
AGCCATTGCGCGATCCGCGCGACACGCGCCAACAGCCCCGTCTTGCAcgc
gatcgtgattctgaccgtgaacgcgatcgACCCAATGTCGCCTCGCGTGC
CCCGCGTTCCACCTCGGGCGATGTGTGGGATCGACTGGGTTCGCGAAACG
TCAAAAGACCGCGGGAAGAACCTATGGACATGCGTGACCGCCGCGAAGCT
GATGAACGCGATGCAAAGCATAGGCGTGGACCGGACGGTGGCCGACGTAG
AAGTGACAGCTTTGATCGTCAGCGTATGCCTAACGACCGACTGCGACGCG
ATGATCGTGCTCCGCGTATCACCACACCTCCTTACGATCAGAACGGAAAG
GCACCGCCGCCTTGGCCGCCAAACCTTGTCGGGCCAATGAGCTTGATGCC
TCCGCCGTTCCCCGGCATGCTCCCGCCTGTGCCGCCTTTACTGCCGAACA
TGGGCGGCGGCGGGAGAGGGCGCGGTGGGTATCGAGCGCGTGATCACGGC
AGGCCTTTACCGCAAAATGGCGTCAGCAACCCTGCAAACTCAAAGTACAA
ACATTTCATTCTTATTGCAATGCATATCCCTGACGATAAGATGATGATTG
GACCCATCTACGCGTTTTTCCAACGGTTTGGGATCCTGAGGGATGTGCAA
CGGTTCCTCCCTGACAAGGCGTTCATATTGTTTGACCGACGTGAATCTGC
CCAGCATGCGTTGTCATCGGTGGATGCTGTAATGGGCAACCGTCACATTC
GACTTCGATGGGCGAGAGAATCTGACTTTGCTGAAGCGGGGCTGCGCTTG
ACGGATGATGGTACATTAGTTGAAGAAGAACAAGCTAAGAAGCATAGTCG
TGAAGAAGAAGAAAAGGCGCCACTAACCCCGACAAAGGTGGAAGTTAGGG
CTACGCCCCCGGATCACAGAGCTCGCTATGACATGGAAAAGGAAAAGAAA
ATTAGGCAAGCAGCTGAAGAGAAGGAACGAAAGATGAAGGAGGCTGAGGA
GGATCTTCGCCGCAAGAAGGAGCAGATAGCAGAATTGCGAAAGCAACAAG
ATGAACGTATTGCAGAACTCAAAGCACGAAAGCAGCAGCTTTTGGCTCGC
CAACATGAAATCTTCGCCAAGATACCATGCGCGAACGACAAGGAGAAGCT
TAAGATGAAGAACGAGTTGGTTGCAATCCAGGAAGAAACCTTGGGGGTGC
AAAAGGAACTGAAGCCAAAGCCCTTGATAGCACCCAAAGCAGAGGCAATG
AAGCGATTTGCACCGGCTTCCAGTGTGTACAGAGTGGATAACCGTCCAAA
GCAGGTACTCGTTAGAGGTGCCAAAGATGATGTGGTACCCGACAGCGCTG
CATCGGCGTTCCATGACACAGAACGTGCAAAGCAATTTGGTAAGAACGAG
TGGCTCTTGACGTTTCTGAGCAGACGGGCAGCCGAATCTGCCATTCGGGC
GCAGAAGGTGCTGAAGAGATGTTTTGGAAATGAGGCTTCTGCGGCGATTG
TCAGCTCAGCGATGCTCGAAACGATCAGACAGAGCAATGAGGTTCACACG
AACACAGCAGCTCATTCCTCACCTCCTGACGTGAAAGCGGACGTGAGCAT
GATGGACGACAATGTGAAACCCCGTAGTGCTTCTGCTGTCGCAGAATGA

protein sequence of Gchil3905.t1

>Gchil3905.t1 ID=Gchil3905.t1|Name=Gchil3905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=733bp
MATSARAWSVAKLKELNFEGDAEALGQYIDAVIENNREAENGDPDLLRAQ
VTRDLDDFLADSAAAAFVDALMRHLSPPAPASPPAPAAPPARAPASANGA
PPPPNHPSHARPSHVDDKLRQPLSETRRRSPRRDRPEPERQDAAQRRSDR
QERRPSRQTVMQRLGDRAEDPREQHKRQRARDPKPLRDPRDTRQQPRLAR
DRDSDRERDRPNVASRAPRSTSGDVWDRLGSRNVKRPREEPMDMRDRREA
DERDAKHRRGPDGGRRRSDSFDRQRMPNDRLRRDDRAPRITTPPYDQNGK
APPPWPPNLVGPMSLMPPPFPGMLPPVPPLLPNMGGGGRGRGGYRARDHG
RPLPQNGVSNPANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQ
RFLPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRL
TDDGTLVEEEQAKKHSREEEEKAPLTPTKVEVRATPPDHRARYDMEKEKK
IRQAAEEKERKMKEAEEDLRRKKEQIAELRKQQDERIAELKARKQQLLAR
QHEIFAKIPCANDKEKLKMKNELVAIQEETLGVQKELKPKPLIAPKAEAM
KRFAPASSVYRVDNRPKQVLVRGAKDDVVPDSAASAFHDTERAKQFGKNE
WLLTFLSRRAAESAIRAQKVLKRCFGNEASAAIVSSAMLETIRQSNEVHT
NTAAHSSPPDVKADVSMMDDNVKPRSASAVAE*

mRNA from alignment at tig00000010_pilon:1317291..1319489+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3905.t1 ID=Gchil3905.t1|Name=Gchil3905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at tig00000010_pilon:1317291..1319489+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCTCTGCACGCGCTTGGTCCGTTGCCAAGCTCAAAGAGCTCAA
CTTTGAAGGCGATGCCGAGGCTCTTGGCCAGTACATTGATGCCGTCATCG
AAAACAATCGCGAGGCCGAGAACGGAGACCCGGACCTTCTCCGCGCCCAG
GTCACGCGCGACCTCGATGACTTTCTGGCAGATTCGGCAGCCGCCGCTTT
TGTAGACGCTCTCATGCGACACCTCTCCCCGCCCGCACCTGCTTCCCCGC
CAGCCCCTGCTGCCCCACCTGCCCGCGCCCCTGCCTCCGCCAACGGCGCT
CCGCCCCCGCCTAACCACCCGTCGCACGCGCGCCCATCGCACGTCGACGA
CAAGTTGCGCCAGCCTCTGTCTGAGACCCGTCGCCGCTCGCCGCGCAGAG
ATCGCCCCGAGCCCGAGCGACAGGACGCCGCTCAACGTCGCTCTGACCGT
CAGGAGCGACGCCCCTCCAGACAGACCGTCATGCAGCGCTTGGGCGACCG
TGCTGAAGATCCGAGGGAGCAACATAAGCGTCAACGCGCGAGAGATCCCA
AGCCATTGCGCGATCCGCGCGACACGCGCCAACAGCCCCGTCTTGCAcgc
gatcgtgattctgaccgtgaacgcgatcgACCCAATGTCGCCTCGCGTGC
CCCGCGTTCCACCTCGGGCGATGTGTGGGATCGACTGGGTTCGCGAAACG
TCAAAAGACCGCGGGAAGAACCTATGGACATGCGTGACCGCCGCGAAGCT
GATGAACGCGATGCAAAGCATAGGCGTGGACCGGACGGTGGCCGACGTAG
AAGTGACAGCTTTGATCGTCAGCGTATGCCTAACGACCGACTGCGACGCG
ATGATCGTGCTCCGCGTATCACCACACCTCCTTACGATCAGAACGGAAAG
GCACCGCCGCCTTGGCCGCCAAACCTTGTCGGGCCAATGAGCTTGATGCC
TCCGCCGTTCCCCGGCATGCTCCCGCCTGTGCCGCCTTTACTGCCGAACA
TGGGCGGCGGCGGGAGAGGGCGCGGTGGGTATCGAGCGCGTGATCACGGC
AGGCCTTTACCGCAAAATGGCGTCAGCAACCCTGCAAACTCAAAGTACAA
ACATTTCATTCTTATTGCAATGCATATCCCTGACGATAAGATGATGATTG
GACCCATCTACGCGTTTTTCCAACGGTTTGGGATCCTGAGGGATGTGCAA
CGGTTCCTCCCTGACAAGGCGTTCATATTGTTTGACCGACGTGAATCTGC
CCAGCATGCGTTGTCATCGGTGGATGCTGTAATGGGCAACCGTCACATTC
GACTTCGATGGGCGAGAGAATCTGACTTTGCTGAAGCGGGGCTGCGCTTG
ACGGATGATGGTACATTAGTTGAAGAAGAACAAGCTAAGAAGCATAGTCG
TGAAGAAGAAGAAAAGGCGCCACTAACCCCGACAAAGGTGGAAGTTAGGG
CTACGCCCCCGGATCACAGAGCTCGCTATGACATGGAAAAGGAAAAGAAA
ATTAGGCAAGCAGCTGAAGAGAAGGAACGAAAGATGAAGGAGGCTGAGGA
GGATCTTCGCCGCAAGAAGGAGCAGATAGCAGAATTGCGAAAGCAACAAG
ATGAACGTATTGCAGAACTCAAAGCACGAAAGCAGCAGCTTTTGGCTCGC
CAACATGAAATCTTCGCCAAGATACCATGCGCGAACGACAAGGAGAAGCT
TAAGATGAAGAACGAGTTGGTTGCAATCCAGGAAGAAACCTTGGGGGTGC
AAAAGGAACTGAAGCCAAAGCCCTTGATAGCACCCAAAGCAGAGGCAATG
AAGCGATTTGCACCGGCTTCCAGTGTGTACAGAGTGGATAACCGTCCAAA
GCAGGTACTCGTTAGAGGTGCCAAAGATGATGTGGTACCCGACAGCGCTG
CATCGGCGTTCCATGACACAGAACGTGCAAAGCAATTTGGTAAGAACGAG
TGGCTCTTGACGTTTCTGAGCAGACGGGCAGCCGAATCTGCCATTCGGGC
GCAGAAGGTGCTGAAGAGATGTTTTGGAAATGAGGCTTCTGCGGCGATTG
TCAGCTCAGCGATGCTCGAAACGATCAGACAGAGCAATGAGGTTCACACG
AACACAGCAGCTCATTCCTCACCTCCTGACGTGAAAGCGGACGTGAGCAT
GATGGACGACAATGTGAAACCCCGTAGTGCTTCTGCTGTCGCAGAATGA

Coding sequence (CDS) from alignment at tig00000010_pilon:1317291..1319489+

>Gchil3905.t1 ID=Gchil3905.t1|Name=Gchil3905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2199bp|location=Sequence derived from alignment at tig00000010_pilon:1317291..1319489+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCTCTGCACGCGCTTGGTCCGTTGCCAAGCTCAAAGAGCTCAA
CTTTGAAGGCGATGCCGAGGCTCTTGGCCAGTACATTGATGCCGTCATCG
AAAACAATCGCGAGGCCGAGAACGGAGACCCGGACCTTCTCCGCGCCCAG
GTCACGCGCGACCTCGATGACTTTCTGGCAGATTCGGCAGCCGCCGCTTT
TGTAGACGCTCTCATGCGACACCTCTCCCCGCCCGCACCTGCTTCCCCGC
CAGCCCCTGCTGCCCCACCTGCCCGCGCCCCTGCCTCCGCCAACGGCGCT
CCGCCCCCGCCTAACCACCCGTCGCACGCGCGCCCATCGCACGTCGACGA
CAAGTTGCGCCAGCCTCTGTCTGAGACCCGTCGCCGCTCGCCGCGCAGAG
ATCGCCCCGAGCCCGAGCGACAGGACGCCGCTCAACGTCGCTCTGACCGT
CAGGAGCGACGCCCCTCCAGACAGACCGTCATGCAGCGCTTGGGCGACCG
TGCTGAAGATCCGAGGGAGCAACATAAGCGTCAACGCGCGAGAGATCCCA
AGCCATTGCGCGATCCGCGCGACACGCGCCAACAGCCCCGTCTTGCAcgc
gatcgtgattctgaccgtgaacgcgatcgACCCAATGTCGCCTCGCGTGC
CCCGCGTTCCACCTCGGGCGATGTGTGGGATCGACTGGGTTCGCGAAACG
TCAAAAGACCGCGGGAAGAACCTATGGACATGCGTGACCGCCGCGAAGCT
GATGAACGCGATGCAAAGCATAGGCGTGGACCGGACGGTGGCCGACGTAG
AAGTGACAGCTTTGATCGTCAGCGTATGCCTAACGACCGACTGCGACGCG
ATGATCGTGCTCCGCGTATCACCACACCTCCTTACGATCAGAACGGAAAG
GCACCGCCGCCTTGGCCGCCAAACCTTGTCGGGCCAATGAGCTTGATGCC
TCCGCCGTTCCCCGGCATGCTCCCGCCTGTGCCGCCTTTACTGCCGAACA
TGGGCGGCGGCGGGAGAGGGCGCGGTGGGTATCGAGCGCGTGATCACGGC
AGGCCTTTACCGCAAAATGGCGTCAGCAACCCTGCAAACTCAAAGTACAA
ACATTTCATTCTTATTGCAATGCATATCCCTGACGATAAGATGATGATTG
GACCCATCTACGCGTTTTTCCAACGGTTTGGGATCCTGAGGGATGTGCAA
CGGTTCCTCCCTGACAAGGCGTTCATATTGTTTGACCGACGTGAATCTGC
CCAGCATGCGTTGTCATCGGTGGATGCTGTAATGGGCAACCGTCACATTC
GACTTCGATGGGCGAGAGAATCTGACTTTGCTGAAGCGGGGCTGCGCTTG
ACGGATGATGGTACATTAGTTGAAGAAGAACAAGCTAAGAAGCATAGTCG
TGAAGAAGAAGAAAAGGCGCCACTAACCCCGACAAAGGTGGAAGTTAGGG
CTACGCCCCCGGATCACAGAGCTCGCTATGACATGGAAAAGGAAAAGAAA
ATTAGGCAAGCAGCTGAAGAGAAGGAACGAAAGATGAAGGAGGCTGAGGA
GGATCTTCGCCGCAAGAAGGAGCAGATAGCAGAATTGCGAAAGCAACAAG
ATGAACGTATTGCAGAACTCAAAGCACGAAAGCAGCAGCTTTTGGCTCGC
CAACATGAAATCTTCGCCAAGATACCATGCGCGAACGACAAGGAGAAGCT
TAAGATGAAGAACGAGTTGGTTGCAATCCAGGAAGAAACCTTGGGGGTGC
AAAAGGAACTGAAGCCAAAGCCCTTGATAGCACCCAAAGCAGAGGCAATG
AAGCGATTTGCACCGGCTTCCAGTGTGTACAGAGTGGATAACCGTCCAAA
GCAGGTACTCGTTAGAGGTGCCAAAGATGATGTGGTACCCGACAGCGCTG
CATCGGCGTTCCATGACACAGAACGTGCAAAGCAATTTGGTAAGAACGAG
TGGCTCTTGACGTTTCTGAGCAGACGGGCAGCCGAATCTGCCATTCGGGC
GCAGAAGGTGCTGAAGAGATGTTTTGGAAATGAGGCTTCTGCGGCGATTG
TCAGCTCAGCGATGCTCGAAACGATCAGACAGAGCAATGAGGTTCACACG
AACACAGCAGCTCATTCCTCACCTCCTGACGTGAAAGCGGACGTGAGCAT
GATGGACGACAATGTGAAACCCCGTAGTGCTTCTGCTGTCGCAGAATGA