Gchil3905.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3905.t1
Unique NameGchil3905.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length733
Homology
BLAST of Gchil3905.t1 vs. uniprot
Match: A0A2V3IT27_9FLOR (Zinc finger CCCH domain-containing protein 41 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT27_9FLOR)

HSP 1 Score: 724 bits (1870), Expect = 4.280e-252
Identity = 482/755 (63.84%), Postives = 551/755 (72.98%), Query Frame = 0
Query:    1 MATSARAWSVAKLKELNFEGDAEALGQYIDAVIENNREAENGDPDLLRAQVTRDLDDFLADSAAAAFVDALMRHLSPPAPASXXXXXXXXXRAPASANGAPPPPNHPSHARPSHVDDKLRQPLS--ETRRRSPRRDRPEPER--------QDAAQRRSDXXXXXXXXXTVMQRLGDRAEDPREQHKRQRARDPKPLRDPRDTRQQPRLARDRDSDRERDRPNVASRAPRSTSGDVWDRLGSRNVKRPREEPMDMRDRREADERDAKHRRGPDGGRRRSDSFDRQRMPNDRLRRDDRAPRITTPPYDQNGKAPPPWPPNLVGPMSLMPPPFP---GMLPPVPPLLPNMGGGGRGRGGYRARDHGRP-LPQNGVSNP--ANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQRFLPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRLTDDGTLVEEEQAKK-----HSREEEEKAPLTPTKVEVRATPPDHRARYDMEKEKKIRQAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQQLLARQHEIFAKIPCANDKEKLKMKNELVAIQEETLGVQKELKPKPLIAPKAEAMKRFAPASSVYRVDNRPKQVLVRGAKDDVVPDSAASAFHDTERAKQFGKNEWLLTFLSRRAAESAIRAQKVLKRCFGNEASAAIVSSAMLETIRQSNEV-HTNTAAHSSPPDV-KADVSMMDDNVKPRSASAVAE 732
            MA SARAWSVAKL+ELNFEGDAEALGQYIDAVIENNR+AENGDPDLLR+QVTRDL DFLA+SAA +FVDALMRHLSP              + P +A    P P+     RPSHVD+KLRQPLS  E RRRSPRRDR E +R         D A RR D         TVMQRLGDR ED RE HKRQR  DPK  R    +RQ  RL R+R       +P    R  R  SGD+ DRLGSRN KRPRE+P D RDRR+ DERD+KHRR  D  RRRSD++DRQR+P+DR RRDDR   IT P YDQNGKAPPPWPP +V  M           G+LPPVPPL+P MG   RGRGG+R+R+ GR  +     +NP  ANSKY+HFIL+A  IP+DKMMIGPIYAFFQRFG+L+DV RF PDKAFILFDRR+SAQHALSSVDAVMGNRHI+L WAR+SDFAEAGLRLTD+GTLVE+E  KK     H               + R TP + + R +   EKK+RQ A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KQQLLARQHEIFAKI  AND+EKL+MKNELVA+QEET+ VQ++LKPKP+ APK +  KRF  + S YRVDNRPKQVLVRGAK+DV+ D AASAFHDTERA+ FGKNEWLLTFLSRRAAESAIRAQKVLKR FG +A+A I+S AMLE  + +  V  T+   + SPP V KAD+ MM+ + K ++ASAVA+
Sbjct:    1 MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDPDLLRSQVTRDLQDFLAESAAGSFVDALMRHLSP---------NSTSVKPPQTAAEPKPEPS-----RPSHVDEKLRQPLSSSEPRRRSPRRDRAEKQRLDNDSRDRSDPAHRRVDRVDRRPNRQTVMQRLGDRVEDLRE-HKRQRTWDPKSPRXXXXSRQPNRLVRER-------QPVQGPRPNRLNSGDIRDRLGSRNPKRPREDPNDNRDRRDLDERDSKHRRQTDSARRRSDNYDRQRLPDDRPRRDDRPGHITPPRYDQNGKAPPPWPPGIVAQMGXXXXXXXXPHGILPPVPPLIPGMGT--RGRGGFRSRESGRAAMSHTAGNNPSAANSKYRHFILVAKAIPEDKMMIGPIYAFFQRFGMLKDVVRFPPDKAFILFDRRDSAQHALSSVDAVMGNRHIKLSWARDSDFAEAGLRLTDEGTLVEDEHPKKPANQHHXXXXXXXXXXXXXXXDPRPTPSEQKLRAESG-EKKVRQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARKQQLLARQHEIFAKISSANDEEKLRMKNELVAVQEETIQVQQQLKPKPVAAPKPDTAKRFTHSPSAYRVDNRPKQVLVRGAKNDVLADGAASAFHDTERAESFGKNEWLLTFLSRRAAESAIRAQKVLKRTFGTDATAVIISPAMLEAAQSTASVADTDATKNVSPPAVVKADMKMMEVSDKAQNASAVAK 730          
BLAST of Gchil3905.t1 vs. uniprot
Match: R7QP76_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP76_CHOCR)

HSP 1 Score: 137 bits (345), Expect = 9.130e-31
Identity = 119/372 (31.99%), Postives = 174/372 (46.77%), Query Frame = 0
Query:  350 GRPLPQNGVSNPANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQRFLPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRLTDDGTLVEEEQAKKHSREEEEKAPLTP-------------TKVEVRATPPDHRARYDMEKEKK-IRQAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQQLLARQHEIFAKIPCANDKE-KLKMKNELVAIQEETLGVQKELKPKPLIAPKAEAMKRFAPASSV-------------------YRVDNRPKQVLVRGAKDDVVPDSAASAFHDTERAKQFGKNEWLLTFLSRRAAESAIRAQKVLKRCFGNEASAAIVSSA 687
            GR    +G +  A  + ++F+L   ++P+DK+ +  I  FF+ +G   +VQ   PD+AFI++  RE AQ A  SVDA+MGNRHIRL WA   D+  +GL LTD+G L +    ++ +R++                      + E R+      A    E EK+   +AAEE                                    K+QL+  Q  +FA +  A D+  KL++  +  AI  +   V   L PK   A    +  R A + S                    + VDNRPK + + GAK DVV ++A S FH+T  A++ G   WLL F +RRAAESA+RA+  LKR FG  A + IV+ A
Sbjct:   49 GRGPSADGQAAQAGGRKQYFVLAMRNVPEDKLKLPHILKFFENYGTPDNVQLVTPDRAFIIYASREPAQAATKSVDAIMGNRHIRLGWATAQDYDVSGLELTDEGVL-QPSTGRRKTRDDRRGXXXXXXXXRNDGNRGEGGARKESRSAAHGMNAVAKKEAEKQEAAKAAEEDLRKKRAAIAEARAKQDEVKTQLQAR----------KKQLVDEQKVLFASMATAGDQAAKLELFRKAKAIDSQLEQVVSGLNPK---AGAVASTARVAASPSARGGASGRXXXXXXXGRFEGFSVDNRPKTLQIMGAKADVVVETAISVFHETLSAEKVGAF-WLLNFPTRRAAESAMRARGPLKRGFGAAAMSQIVAGA 405          
BLAST of Gchil3905.t1 vs. uniprot
Match: A0A1X6PK71_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PK71_PORUM)

HSP 1 Score: 71.6 bits (174), Expect = 4.360e-9
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0
Query:  336 GGGRGRGGYRARDHGRPLPQNGVSNPANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQ---RFLPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAE 445
            GGG  R G R   H              ++     L+  ++P DK+ +  I ++F RFG +  +Q      PD+A + F   +SA  A  SVDAVMGNRH+RL WA+++D+ +
Sbjct:  491 GGGGDRSGSRVGGHNAXXXXXXXXXXXXNRSFPSALVLKNVPADKLHVNAILSYFSRFGAVSGIQLRPSTRPDRAVVEFATPDSAGRAYESVDAVMGNRHVRLHWAQKNDYTD 603          
BLAST of Gchil3905.t1 vs. uniprot
Match: A0A7S0ZK21_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK21_9RHOD)

HSP 1 Score: 68.6 bits (166), Expect = 1.950e-8
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 0
Query:  332 PNMGG-GGRGRGGYRARDHGRPLPQNGVSNPANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQRF---LPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEA 446
            P+ GG GG   GG R R+   P P +G  +          L+  ++PDDK+ I  I  +F++FG + ++Q      PD+A++ F  ++ AQ A+ S++A+MGNRH+R+ WA      +A
Sbjct:  276 PDRGGRGGGXXGGLRDRN---PRPVDGEGSERT-------LVVRNLPDDKLNIMEIGEWFKQFGTITNIQLVPAEKPDRAYVEFSAKDMAQAAMESIEAIMGNRHVRIFWAHRDSKVQA 384          
BLAST of Gchil3905.t1 vs. uniprot
Match: A0A4Y7JNN5_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JNN5_PAPSO)

HSP 1 Score: 63.2 bits (152), Expect = 1.600e-6
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0
Query:  371 LIAMHIPDDKMMIGPIYAFFQRFGILRDVQRFLPD---KAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAE 445
            L   HIP  +  I P+ + FQ+FG++ D+  F+     KA+I F +RESA+ A+SS DAV+GNR IRL WA +    E
Sbjct:  561 LYVSHIPPKENKIEPLLSHFQKFGVVDDI--FITTDRKKAYIQFSKRESAEAAISSPDAVLGNRFIRLSWAYKDRLLE 636          
The following BLAST results are available for this feature:
BLAST of Gchil3905.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IT27_9FLOR4.280e-25263.84Zinc finger CCCH domain-containing protein 41 n=1 ... [more]
R7QP76_CHOCR9.130e-3131.99RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A1X6PK71_PORUM4.360e-934.51RRM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S0ZK21_9RHOD1.950e-834.45Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A4Y7JNN5_PAPSO1.600e-644.87Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 495..550
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 457..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 698..732
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..109
NoneNo IPR availablePANTHERPTHR14398:SF0ZINC FINGER PROTEIN SWMcoord: 371..672
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 384..439
e-value: 5.1E-5
score: 25.1
IPR045137RNA-binding protein 26/27PANTHERPTHR14398RNA RECOGNITION RRM/RNP DOMAINcoord: 371..672
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 369..440
score: 8.893424
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 349..443

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1317291..1319489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3905.t1Gchil3905.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000010_pilon 1317291..1319489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3905.t1 ID=Gchil3905.t1|Name=Gchil3905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=733bp
MATSARAWSVAKLKELNFEGDAEALGQYIDAVIENNREAENGDPDLLRAQ
VTRDLDDFLADSAAAAFVDALMRHLSPPAPASPPAPAAPPARAPASANGA
PPPPNHPSHARPSHVDDKLRQPLSETRRRSPRRDRPEPERQDAAQRRSDR
QERRPSRQTVMQRLGDRAEDPREQHKRQRARDPKPLRDPRDTRQQPRLAR
DRDSDRERDRPNVASRAPRSTSGDVWDRLGSRNVKRPREEPMDMRDRREA
DERDAKHRRGPDGGRRRSDSFDRQRMPNDRLRRDDRAPRITTPPYDQNGK
APPPWPPNLVGPMSLMPPPFPGMLPPVPPLLPNMGGGGRGRGGYRARDHG
RPLPQNGVSNPANSKYKHFILIAMHIPDDKMMIGPIYAFFQRFGILRDVQ
RFLPDKAFILFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRL
TDDGTLVEEEQAKKHSREEEEKAPLTPTKVEVRATPPDHRARYDMEKEKK
IRQAAEEKERKMKEAEEDLRRKKEQIAELRKQQDERIAELKARKQQLLAR
QHEIFAKIPCANDKEKLKMKNELVAIQEETLGVQKELKPKPLIAPKAEAM
KRFAPASSVYRVDNRPKQVLVRGAKDDVVPDSAASAFHDTERAKQFGKNE
WLLTFLSRRAAESAIRAQKVLKRCFGNEASAAIVSSAMLETIRQSNEVHT
NTAAHSSPPDVKADVSMMDDNVKPRSASAVAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR045137RBM26/27
IPR000504RRM_dom
IPR035979RBD_domain_sf