Gchil4038.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4038.t1
Unique Name	Gchil4038.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:204850..206571 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4038	Gchil4038	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 204850..206571 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4038.t1.start1	Gchil4038.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 204850..204852 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4038.t1.CDS1	Gchil4038.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 204850..206571 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4038.t1.exon1	Gchil4038.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 204850..206571 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4038.t1.stop1	Gchil4038.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 206569..206571 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4038.t1	Gchil4038.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 204850..206571 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:204850..206571+
coding sequence from alignment at tig00004373_pilon:204850..206571+

mRNA sequence

>Gchil4038.t1 ID=Gchil4038.t1|Name=Gchil4038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=574bp
MSSSSTAISHGFTAIDARIVLRPTPPPCPPLSPPPYRLNLLAAHDDILYI
PASPNEITRLCIRRSNGPQLLNLPSVTIAPPTVVNNVRVAPFSFPPSTHS
LVLTAGSEQNPNSGKLVFLPLPSYSASLKLAPPVARSYSTRTHSAWGLAI
HPFLAQIAISTNSFRSVVYSFRPSYSSPRPRLLHPDDPQQIPLVHVSPPI
TAPPADVDQLHALFYEHRFLLRQLHRNNLPCVSFHRHGDMLACASIDCTF
SVQSLQSSFRPWVYQSDQPVSSNFNYSRMRERCWQTHWILPSTVQYVSKE
DDVWKFQSFQRKIRHSWDLTLSPMASIPSIFNRHDYAVRRMQTKVFYDDN
QLLEDSSQSHPTTLPSHSVSFQELENAFDVSSFFDKPTESQRQASVYTIN
PKPFYAKKAPVFAPDELDSYAQGHLLLVCYERKLELHHVPVNRDCNAMNE
CSAPDVQKLDTMSLDATLGFQIMFTNVIEVAPLSLLVCTAIDTGILLVRI
LRATSESSIDKPSLLIERVISMNIAVAGTCVIERPGDNIAEFCAELWIFT
IDGCLQCWELSQDGYAIDISTPL*

spliced messenger RNA

>Gchil4038.t1 ID=Gchil4038.t1|Name=Gchil4038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00004373_pilon:204850..206571+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCATCCTCCACCGCCATTTCCCACGGCTTCACCGCAATCGATGC
TCGCATCGTGCTAAGACCCACGCCCCCACCCTGTCCACCCTTGTCCCCTC
CCCCTTACCGTCTGAATCTCCTTGCCGCCCACGATGACATTCTTTATATC
CCCGCTTCGCCCAACGAAATCACCCGTCTCTGCATCCGTCGCAGCAACGG
TCCGCAACTGCTCAACCTTCCTTCTGTCACCATTGCCCCACCCACCGTCG
TAAACAACGTGCGCGTCGCCCCGTTCTCATTTCCGCCCAGCACACACTCA
CTCGTGCTCACCGCTGGCTCGGAGCAGAATCCAAACTCTGGCAAACTCGT
TTTTCTTCCCCTGCCCTCTTATTCGGCATCTTTAAAGCTTGCCCCGCCTG
TAGCGCGCTCCTACAGCACAAGAACCCATAGCGCGTGGGGACTGGCGATT
CACCCGTTTCTAGCCCAAATTGCGATCAGCACTAACTCTTTTCGCTCGGT
CGTGTACTCGTTTCGTCCGAGTTACTCCAGCCCGCGTCCCAGATTGCTGC
ATCCAGATGACCCGCAGCAGATTCCTCTTGTGCACGTGTCTCCCCCCATC
ACGGCACCGCCTGCAGATGTCGATCAACTGCATGCTCTTTTCTACGAGCA
TCGCTTTCTGCTTCGTCAGCTGCATCGTAACAATCTGCCGTGCGTCAGTT
TTCATCGCCACGGTGATATGCTTGCGTGCGCTTCGATTGACTGCACGTTT
TCTGTACAGAGCTTGCAATCTTCGTTCCGCCCATGGGTCTATCAGAGCGA
TCAGCCTGTGTCCTCCAACTTCAATTATTCGCGAATGCGCGAGCGGTGTT
GGCAAACGCATTGGATTCTTCCTTCTACAGTGCAGTATGTATCTAAGGAA
GATGATGTCTGGAAGTTTCAGTCATTCCAAAGAAAAATACGTCATTCATG
GGATCTCACACTCTCGCCTATGGCTTCGATTCCGTCCATTTTTAATCGAC
ATGACTACGCTGTGCGACGCATGCAAACTAAAGTATTCTATGATGATAAT
CAGTTATTAGAGGACTCTTCTCAAAGTCACCCTACCACGTTGCCATCGCA
CTCTGTCTCTTTTCAAGAGCTTGAGAACGCCTTTGATGTGTCTTCTTTCT
TTGACAAGCCCACCGAATCACAGCGACAAGCGTCAGTGTACACCATCAAT
CCAAAGCCGTTCTACGCCAAAAAAGCACCCGTGTTTGCGCCCGATGAGCT
TGATTCGTATGCACAAGGACATTTGCTTCTCGTATGCTACGAACGGAAGC
TAGAACTTCATCACGTTCCTGTCAACCGCGACTGCAATGCAATGAACGAA
TGCAGTGCGCCAGATGTTCAAAAGCTTGATACGATGAGCTTGGATGCCAC
CCTTGGCTTTCAAATCATGTTCACTAATGTAATTGAAGTGGCGCCACTCA
GTCTGCTTGTGTGTACTGCCATAGACACTGGTATTTTGCTCGTTCGTATC
TTGCGTGCCACGTCTGAATCTTCTATTGACAAACCTTCGCTCTTGATTGA
ACGTGTCATCTCGATGAACATTGCGGTCGCCGGAACCTGCGTTATTGAGA
GACCTGGTGACAATATCGCCGAATTCTGTGCTGAATTGTGGATTTTTACC
ATTGATGGTTGCCTCCAGTGCTGGGAGCTGAGCCAAGATGGTTACGCAAT
TGATATTTCGACCCCGTTATGA

protein sequence of Gchil4038.t1

>Gchil4038.t1 ID=Gchil4038.t1|Name=Gchil4038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=574bp
MSSSSTAISHGFTAIDARIVLRPTPPPCPPLSPPPYRLNLLAAHDDILYI
PASPNEITRLCIRRSNGPQLLNLPSVTIAPPTVVNNVRVAPFSFPPSTHS
LVLTAGSEQNPNSGKLVFLPLPSYSASLKLAPPVARSYSTRTHSAWGLAI
HPFLAQIAISTNSFRSVVYSFRPSYSSPRPRLLHPDDPQQIPLVHVSPPI
TAPPADVDQLHALFYEHRFLLRQLHRNNLPCVSFHRHGDMLACASIDCTF
SVQSLQSSFRPWVYQSDQPVSSNFNYSRMRERCWQTHWILPSTVQYVSKE
DDVWKFQSFQRKIRHSWDLTLSPMASIPSIFNRHDYAVRRMQTKVFYDDN
QLLEDSSQSHPTTLPSHSVSFQELENAFDVSSFFDKPTESQRQASVYTIN
PKPFYAKKAPVFAPDELDSYAQGHLLLVCYERKLELHHVPVNRDCNAMNE
CSAPDVQKLDTMSLDATLGFQIMFTNVIEVAPLSLLVCTAIDTGILLVRI
LRATSESSIDKPSLLIERVISMNIAVAGTCVIERPGDNIAEFCAELWIFT
IDGCLQCWELSQDGYAIDISTPL*

mRNA from alignment at tig00004373_pilon:204850..206571+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4038.t1 ID=Gchil4038.t1|Name=Gchil4038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00004373_pilon:204850..206571+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCATCCTCCACCGCCATTTCCCACGGCTTCACCGCAATCGATGC
TCGCATCGTGCTAAGACCCACGCCCCCACCCTGTCCACCCTTGTCCCCTC
CCCCTTACCGTCTGAATCTCCTTGCCGCCCACGATGACATTCTTTATATC
CCCGCTTCGCCCAACGAAATCACCCGTCTCTGCATCCGTCGCAGCAACGG
TCCGCAACTGCTCAACCTTCCTTCTGTCACCATTGCCCCACCCACCGTCG
TAAACAACGTGCGCGTCGCCCCGTTCTCATTTCCGCCCAGCACACACTCA
CTCGTGCTCACCGCTGGCTCGGAGCAGAATCCAAACTCTGGCAAACTCGT
TTTTCTTCCCCTGCCCTCTTATTCGGCATCTTTAAAGCTTGCCCCGCCTG
TAGCGCGCTCCTACAGCACAAGAACCCATAGCGCGTGGGGACTGGCGATT
CACCCGTTTCTAGCCCAAATTGCGATCAGCACTAACTCTTTTCGCTCGGT
CGTGTACTCGTTTCGTCCGAGTTACTCCAGCCCGCGTCCCAGATTGCTGC
ATCCAGATGACCCGCAGCAGATTCCTCTTGTGCACGTGTCTCCCCCCATC
ACGGCACCGCCTGCAGATGTCGATCAACTGCATGCTCTTTTCTACGAGCA
TCGCTTTCTGCTTCGTCAGCTGCATCGTAACAATCTGCCGTGCGTCAGTT
TTCATCGCCACGGTGATATGCTTGCGTGCGCTTCGATTGACTGCACGTTT
TCTGTACAGAGCTTGCAATCTTCGTTCCGCCCATGGGTCTATCAGAGCGA
TCAGCCTGTGTCCTCCAACTTCAATTATTCGCGAATGCGCGAGCGGTGTT
GGCAAACGCATTGGATTCTTCCTTCTACAGTGCAGTATGTATCTAAGGAA
GATGATGTCTGGAAGTTTCAGTCATTCCAAAGAAAAATACGTCATTCATG
GGATCTCACACTCTCGCCTATGGCTTCGATTCCGTCCATTTTTAATCGAC
ATGACTACGCTGTGCGACGCATGCAAACTAAAGTATTCTATGATGATAAT
CAGTTATTAGAGGACTCTTCTCAAAGTCACCCTACCACGTTGCCATCGCA
CTCTGTCTCTTTTCAAGAGCTTGAGAACGCCTTTGATGTGTCTTCTTTCT
TTGACAAGCCCACCGAATCACAGCGACAAGCGTCAGTGTACACCATCAAT
CCAAAGCCGTTCTACGCCAAAAAAGCACCCGTGTTTGCGCCCGATGAGCT
TGATTCGTATGCACAAGGACATTTGCTTCTCGTATGCTACGAACGGAAGC
TAGAACTTCATCACGTTCCTGTCAACCGCGACTGCAATGCAATGAACGAA
TGCAGTGCGCCAGATGTTCAAAAGCTTGATACGATGAGCTTGGATGCCAC
CCTTGGCTTTCAAATCATGTTCACTAATGTAATTGAAGTGGCGCCACTCA
GTCTGCTTGTGTGTACTGCCATAGACACTGGTATTTTGCTCGTTCGTATC
TTGCGTGCCACGTCTGAATCTTCTATTGACAAACCTTCGCTCTTGATTGA
ACGTGTCATCTCGATGAACATTGCGGTCGCCGGAACCTGCGTTATTGAGA
GACCTGGTGACAATATCGCCGAATTCTGTGCTGAATTGTGGATTTTTACC
ATTGATGGTTGCCTCCAGTGCTGGGAGCTGAGCCAAGATGGTTACGCAAT
TGATATTTCGACCCCGTTATGA

Coding sequence (CDS) from alignment at tig00004373_pilon:204850..206571+

>Gchil4038.t1 ID=Gchil4038.t1|Name=Gchil4038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00004373_pilon:204850..206571+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCATCCTCCACCGCCATTTCCCACGGCTTCACCGCAATCGATGC
TCGCATCGTGCTAAGACCCACGCCCCCACCCTGTCCACCCTTGTCCCCTC
CCCCTTACCGTCTGAATCTCCTTGCCGCCCACGATGACATTCTTTATATC
CCCGCTTCGCCCAACGAAATCACCCGTCTCTGCATCCGTCGCAGCAACGG
TCCGCAACTGCTCAACCTTCCTTCTGTCACCATTGCCCCACCCACCGTCG
TAAACAACGTGCGCGTCGCCCCGTTCTCATTTCCGCCCAGCACACACTCA
CTCGTGCTCACCGCTGGCTCGGAGCAGAATCCAAACTCTGGCAAACTCGT
TTTTCTTCCCCTGCCCTCTTATTCGGCATCTTTAAAGCTTGCCCCGCCTG
TAGCGCGCTCCTACAGCACAAGAACCCATAGCGCGTGGGGACTGGCGATT
CACCCGTTTCTAGCCCAAATTGCGATCAGCACTAACTCTTTTCGCTCGGT
CGTGTACTCGTTTCGTCCGAGTTACTCCAGCCCGCGTCCCAGATTGCTGC
ATCCAGATGACCCGCAGCAGATTCCTCTTGTGCACGTGTCTCCCCCCATC
ACGGCACCGCCTGCAGATGTCGATCAACTGCATGCTCTTTTCTACGAGCA
TCGCTTTCTGCTTCGTCAGCTGCATCGTAACAATCTGCCGTGCGTCAGTT
TTCATCGCCACGGTGATATGCTTGCGTGCGCTTCGATTGACTGCACGTTT
TCTGTACAGAGCTTGCAATCTTCGTTCCGCCCATGGGTCTATCAGAGCGA
TCAGCCTGTGTCCTCCAACTTCAATTATTCGCGAATGCGCGAGCGGTGTT
GGCAAACGCATTGGATTCTTCCTTCTACAGTGCAGTATGTATCTAAGGAA
GATGATGTCTGGAAGTTTCAGTCATTCCAAAGAAAAATACGTCATTCATG
GGATCTCACACTCTCGCCTATGGCTTCGATTCCGTCCATTTTTAATCGAC
ATGACTACGCTGTGCGACGCATGCAAACTAAAGTATTCTATGATGATAAT
CAGTTATTAGAGGACTCTTCTCAAAGTCACCCTACCACGTTGCCATCGCA
CTCTGTCTCTTTTCAAGAGCTTGAGAACGCCTTTGATGTGTCTTCTTTCT
TTGACAAGCCCACCGAATCACAGCGACAAGCGTCAGTGTACACCATCAAT
CCAAAGCCGTTCTACGCCAAAAAAGCACCCGTGTTTGCGCCCGATGAGCT
TGATTCGTATGCACAAGGACATTTGCTTCTCGTATGCTACGAACGGAAGC
TAGAACTTCATCACGTTCCTGTCAACCGCGACTGCAATGCAATGAACGAA
TGCAGTGCGCCAGATGTTCAAAAGCTTGATACGATGAGCTTGGATGCCAC
CCTTGGCTTTCAAATCATGTTCACTAATGTAATTGAAGTGGCGCCACTCA
GTCTGCTTGTGTGTACTGCCATAGACACTGGTATTTTGCTCGTTCGTATC
TTGCGTGCCACGTCTGAATCTTCTATTGACAAACCTTCGCTCTTGATTGA
ACGTGTCATCTCGATGAACATTGCGGTCGCCGGAACCTGCGTTATTGAGA
GACCTGGTGACAATATCGCCGAATTCTGTGCTGAATTGTGGATTTTTACC
ATTGATGGTTGCCTCCAGTGCTGGGAGCTGAGCCAAGATGGTTACGCAAT
TGATATTTCGACCCCGTTATGA