Gchil8961.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8961.t1
Unique Name	Gchil8961.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:442751..443629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704792.1
PFAMs	PDZ,PDZ_2,Peptidase_M50
Max annot lvl	2759\|Eukaryota
Evalue	1.7e-74
EggNOG OGs	COG0750@1\|root,2QT40@2759\|Eukaryota
Description	metalloendopeptidase activity
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8961	Gchil8961	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 442751..443629 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8961.t1.start1	Gchil8961.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 442751..442753 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8961.t1.CDS1	Gchil8961.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 442751..443629 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8961.t1.exon1	Gchil8961.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 442751..443629 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8961.t1.stop1	Gchil8961.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 443627..443629 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8961.t1	Gchil8961.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 442751..443629 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:442751..443629+
coding sequence from alignment at tig00004370_pilon:442751..443629+

mRNA sequence

>Gchil8961.t1 ID=Gchil8961.t1|Name=Gchil8961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=293bp
MVSDDADMLQNRPLLDRAIVISAGVVANLVLAWSSIFASMSLLGVPLYSF
ERGVKIEKVVDANGAAAAAGIQAGDIIVGVDGKQLLDSVDSSAQVAEYIR
TSNGRDILFGIERNNSTIQVLVTPKCCTRDGSSLMGVQLNSRITMQRNHN
ASLLNVVRSTNNEFTRLCTQTWNGLRATVSNFEQSSKNLSGPIGVVSIGA
QLAREDAAALFTFCAVISINLAVINALPLPALDGGQMVLLAVEFVRGTPV
SLRIQDAINRTALLLFLAFSGVLVVGDLERLNIVAALQQLFS*

spliced messenger RNA

>Gchil8961.t1 ID=Gchil8961.t1|Name=Gchil8961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004370_pilon:442751..443629+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAGCGATGACGCCGATATGCTGCAAAACCGCCCGTTATTGGATCG
TGCCATTGTGATTTCGGCGGGCGTGGTGGCCAATTTGGTGTTGGCTTGGA
GTTCTATTTTCGCATCCATGTCGCTGTTGGGCGTGCCGTTGTACAGCTTT
GAACGCGGGGTGAAGATTGAAAAGGTGGTAGATGCCAACGGGGCGGCGGC
GGCTGCAGGCATTCAGGCAGGCGACATTATTGTAGGCGTGGATGGAAAGC
AATTGCTCGATTCGGTGGACAGCTCTGCGCAAGTAGCTGAATACATCCGC
ACAAGCAACGGACGTGATATACTGTTTGGCATAGAACGCAACAACTCTAC
CATTCAAGTGTTGGTGACACCCAAGTGTTGCACTCGCGACGGCAGCTCAC
TAATGGGCGTCCAACTCAACTCACGCATCACAATGCAACGTAATCACAAC
GCGTCACTTTTGAACGTGGTTCGCAGCACCAACAACGAATTCACACGACT
GTGCACGCAAACGTGGAACGGACTTCGCGCCACAGTGAGCAACTTTGAAC
AATCATCCAAAAACCTGTCGGGCCCCATCGGGGTGGTTTCCATCGGCGCG
CAATTGGCACGCGAGGACGCGGCAGCTCTGTTCACATTTTGCGCAGTCAT
CAGCATCAATCTTGCCGTGATCAACGCACTTCCACTGCCCGCTCTGGACG
GCGGTCAAATGGTTCTTCTGGCGGTGGAGTTTGTGCGCGGCACGCCCGTA
TCTCTCCGCATTCAAGACGCCATCAATCGCACGGCGCTGTTGCTGTTTCT
GGCCTTCTCCGGCGTGCTCGTCGTGGGCGATCTGGAGCGGCTCAACATTG
TGGCCGCGCTGCAGCAACTGTTCAGCTGA

protein sequence of Gchil8961.t1

>Gchil8961.t1 ID=Gchil8961.t1|Name=Gchil8961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=293bp
MVSDDADMLQNRPLLDRAIVISAGVVANLVLAWSSIFASMSLLGVPLYSF
ERGVKIEKVVDANGAAAAAGIQAGDIIVGVDGKQLLDSVDSSAQVAEYIR
TSNGRDILFGIERNNSTIQVLVTPKCCTRDGSSLMGVQLNSRITMQRNHN
ASLLNVVRSTNNEFTRLCTQTWNGLRATVSNFEQSSKNLSGPIGVVSIGA
QLAREDAAALFTFCAVISINLAVINALPLPALDGGQMVLLAVEFVRGTPV
SLRIQDAINRTALLLFLAFSGVLVVGDLERLNIVAALQQLFS*

mRNA from alignment at tig00004370_pilon:442751..443629+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8961.t1 ID=Gchil8961.t1|Name=Gchil8961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004370_pilon:442751..443629+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAGCGATGACGCCGATATGCTGCAAAACCGCCCGTTATTGGATCG
TGCCATTGTGATTTCGGCGGGCGTGGTGGCCAATTTGGTGTTGGCTTGGA
GTTCTATTTTCGCATCCATGTCGCTGTTGGGCGTGCCGTTGTACAGCTTT
GAACGCGGGGTGAAGATTGAAAAGGTGGTAGATGCCAACGGGGCGGCGGC
GGCTGCAGGCATTCAGGCAGGCGACATTATTGTAGGCGTGGATGGAAAGC
AATTGCTCGATTCGGTGGACAGCTCTGCGCAAGTAGCTGAATACATCCGC
ACAAGCAACGGACGTGATATACTGTTTGGCATAGAACGCAACAACTCTAC
CATTCAAGTGTTGGTGACACCCAAGTGTTGCACTCGCGACGGCAGCTCAC
TAATGGGCGTCCAACTCAACTCACGCATCACAATGCAACGTAATCACAAC
GCGTCACTTTTGAACGTGGTTCGCAGCACCAACAACGAATTCACACGACT
GTGCACGCAAACGTGGAACGGACTTCGCGCCACAGTGAGCAACTTTGAAC
AATCATCCAAAAACCTGTCGGGCCCCATCGGGGTGGTTTCCATCGGCGCG
CAATTGGCACGCGAGGACGCGGCAGCTCTGTTCACATTTTGCGCAGTCAT
CAGCATCAATCTTGCCGTGATCAACGCACTTCCACTGCCCGCTCTGGACG
GCGGTCAAATGGTTCTTCTGGCGGTGGAGTTTGTGCGCGGCACGCCCGTA
TCTCTCCGCATTCAAGACGCCATCAATCGCACGGCGCTGTTGCTGTTTCT
GGCCTTCTCCGGCGTGCTCGTCGTGGGCGATCTGGAGCGGCTCAACATTG
TGGCCGCGCTGCAGCAACTGTTCAGCTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:442751..443629+

>Gchil8961.t1 ID=Gchil8961.t1|Name=Gchil8961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00004370_pilon:442751..443629+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAGCGATGACGCCGATATGCTGCAAAACCGCCCGTTATTGGATCG
TGCCATTGTGATTTCGGCGGGCGTGGTGGCCAATTTGGTGTTGGCTTGGA
GTTCTATTTTCGCATCCATGTCGCTGTTGGGCGTGCCGTTGTACAGCTTT
GAACGCGGGGTGAAGATTGAAAAGGTGGTAGATGCCAACGGGGCGGCGGC
GGCTGCAGGCATTCAGGCAGGCGACATTATTGTAGGCGTGGATGGAAAGC
AATTGCTCGATTCGGTGGACAGCTCTGCGCAAGTAGCTGAATACATCCGC
ACAAGCAACGGACGTGATATACTGTTTGGCATAGAACGCAACAACTCTAC
CATTCAAGTGTTGGTGACACCCAAGTGTTGCACTCGCGACGGCAGCTCAC
TAATGGGCGTCCAACTCAACTCACGCATCACAATGCAACGTAATCACAAC
GCGTCACTTTTGAACGTGGTTCGCAGCACCAACAACGAATTCACACGACT
GTGCACGCAAACGTGGAACGGACTTCGCGCCACAGTGAGCAACTTTGAAC
AATCATCCAAAAACCTGTCGGGCCCCATCGGGGTGGTTTCCATCGGCGCG
CAATTGGCACGCGAGGACGCGGCAGCTCTGTTCACATTTTGCGCAGTCAT
CAGCATCAATCTTGCCGTGATCAACGCACTTCCACTGCCCGCTCTGGACG
GCGGTCAAATGGTTCTTCTGGCGGTGGAGTTTGTGCGCGGCACGCCCGTA
TCTCTCCGCATTCAAGACGCCATCAATCGCACGGCGCTGTTGCTGTTTCT
GGCCTTCTCCGGCGTGCTCGTCGTGGGCGATCTGGAGCGGCTCAACATTG
TGGCCGCGCTGCAGCAACTGTTCAGCTGA