Gchil7409.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7409.t1
Unique NameGchil7409.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Homology
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A2V3ID20_9FLOR (RING-H2 finger protein ATL80 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID20_9FLOR)

HSP 1 Score: 343 bits (879), Expect = 4.540e-115
Identity = 185/329 (56.23%), Postives = 223/329 (67.78%), Query Frame = 0
Query:    3 SEASPSSRRWTSRLFHFFPHRRRRTHDSQRVSVTPSDARMA----------------------------------------AVQFRRLDGVDDAHDNAHAHERLIYSMLADMDAIEDGNMFAIVDRMSDEDDYHVARPDFQYFQERVRYSNARNAYYFTSRRQTRPNRLTDDYVMEFRRNVRMPRSAAVGLTTDPNRFDCAASDDQIDALPTIIIEKGDTRSIKEMFDRFRDDDPTS-----EHTSDDCGGLMTSYTECAICLSEFEAGDEITALPCGHMFHLTGCVREWLRNHARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT 286
            S  +PS+RRWT+R+ H FP RRRR   SQR SV P D+                                           A ++ RLD  D   D  H+   ++YS+LAD   IEDG+M AIV+ MSD+DDY +ARP+++ FQERVR++N RN YYF  RRQTR +R+ D++  EFRRN+RM RS   G +   NR++CAASDDQI+ALPTI++EKGDTRS+K++FD  +DD   +        S  CGGLMTSYTECAICL EFEAGDEITALPCGH+FHLTGCVREWLRNHARTCPTCRADICAPSC SDDVNSHSAT+ATSEDLT
Sbjct:    2 SSDTPSARRWTARILHLFPRRRRRAPHSQRPSVAPVDSSPPSRTTRNRQPRPSDTPSVDLSLSXXXXXXXXXSTPALPSPPAARYPRLDDADHLADVNHS-TAVMYSVLAD---IEDGDMVAIVNPMSDDDDYQMARPEYRLFQERVRFANGRNTYYFAGRRQTRISRINDEFANEFRRNLRMLRSNMAGASV--NRYECAASDDQIEALPTIVMEKGDTRSVKQIFDSMKDDSHVAVAAPATAASHQCGGLMTSYTECAICLCEFEAGDEITALPCGHVFHLTGCVREWLRNHARTCPTCRADICAPSCASDDVNSHSATLATSEDLT 324          
BLAST of Gchil7409.t1 vs. uniprot
Match: R7QBY7_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBY7_CHOCR)

HSP 1 Score: 170 bits (431), Expect = 2.200e-49
Identity = 99/179 (55.31%), Postives = 118/179 (65.92%), Query Frame = 0
Query:  116 NAYYFTS-RRQTRPNRLTDDYVMEFRRNVRMPRSAAVGLTTDPN--RFDCAASDDQIDALPTIIIEKGDTRSIKEMFDRFRDDDPTSEH-----TSDDCGGLMTSYTECAICLSEFEAGDEITALPCGHMFHLTGCVREWLRNHARTCPTCRADICAPSCGSDD-VNSHSATMATSEDL 285
            NAYY ++ RR  R   LT +   EF   V   R     L +DP   RF+ AASDDQI+ALP  ++EKG+TRS++ +F     D    EH       +D  G     TECAICLS+FEAGDEIT LPCGH FHLTGCVREWLR+HARTCPTCRADIC  S GS D + SHSAT+ATSE++
Sbjct:    5 NAYYISAPRRPVRHFHLTTELEPEFGWGVHTVR-----LNSDPRAQRFEYAASDDQIEALPAFVMEKGETRSVQRIFA----DMGVPEHEKMAAAEEDGDGAADGLTECAICLSDFEAGDEITLLPCGHFFHLTGCVREWLRDHARTCPTCRADICNRSTGSSDGLGSHSATVATSEEI 174          
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A7J0DII4_9ERIC (RING/U-box superfamily protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DII4_9ERIC)

HSP 1 Score: 73.2 bits (178), Expect = 3.050e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  207 GGLMTSYTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCRADICAPSC 267
            GG +  +T+CAICL+EF AGDEI  LP CGH FH+ GC+  WLR+H+ +CP+CR  + A +C
Sbjct:   67 GGDVGKFTDCAICLAEFVAGDEIRVLPPCGHGFHV-GCIDTWLRSHS-SCPSCRQLLVAATC 126          
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A2R6R3R5_ACTCC (RING-H2 finger protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6R3R5_ACTCC)

HSP 1 Score: 73.2 bits (178), Expect = 4.950e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  207 GGLMTSYTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCRADICAPSC 267
            GG +  +T+CAICL+EF AGDEI  LP CGH FH+ GC+  WLR+H+ +CP+CR  + A +C
Sbjct:   90 GGDVGKFTDCAICLAEFVAGDEIRVLPPCGHGFHV-GCIDTWLRSHS-SCPSCRQLLVAATC 149          
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A445BRR9_ARAHY (RING-type domain-containing protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445BRR9_ARAHY)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-10
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 0
Query:  213 YTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCRADICAP---SCGSDDVNSHSATMAT 281
            +++CAICL+EF AGDEI  LP CGH FH++ C+  WLR+H+ +CP+CR  +  P    CG     + S+T AT
Sbjct:   98 FSDCAICLAEFAAGDEIRVLPQCGHGFHVS-CIDAWLRSHS-SCPSCRQILVVPRCNKCGGFPAPASSSTTAT 168          
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A7S1YGP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YGP6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.710e-10
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0
Query:  196 DPTSEHTSDDCGGLMTSYTECAICLSEFEAGDEITALPCGHMFHLTGCVREWLRNHARTCPTCRADI 262
            D + EH  D+  G      EC ICL EFE GD++  LPCGH +H   CV  WL   + TCP C+ D+
Sbjct:  285 DYSEEHEDDESDGDCGHLLECTICLEEFEIGDKLRTLPCGHFYHCE-CVTRWLIQRSSTCPLCKLDL 350          
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A164XST4_DAUCS (RING-type domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164XST4_DAUCS)

HSP 1 Score: 67.8 bits (164), Expect = 4.870e-10
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0
Query:  172 LPTIIIEKGDTRSIKEMFDRFRDDDPTSEHTSDDCGGLMTSYTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCRADICAPSC 267
            LP +   KG T  I +         P   +++DD G     Y +CAICL+EF AGD + ALP CGH FH  GC+  WL++H+ +CP+CR  +   SC
Sbjct:   72 LPHLHPNKGLTNKILKKI-------PKITYSADDAG----KYFDCAICLTEFVAGDVLRALPQCGHGFH-AGCIDTWLKSHS-SCPSCRKILVDSSC 155          
BLAST of Gchil7409.t1 vs. uniprot
Match: A0A484L9A5_9ASTE (RING-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484L9A5_9ASTE)

HSP 1 Score: 67.4 bits (163), Expect = 7.060e-10
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  209 LMTSYTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCRADICAPSC 267
            L   ++ECAICL++F AGDE+  LP CGH FH  GCV  WL +H+ +CP+CR  +  P C
Sbjct:   99 LAAEFSECAICLADFAAGDELRVLPQCGHGFH-AGCVDTWLGSHS-SCPSCRQLLVPPRC 156          
BLAST of Gchil7409.t1 vs. uniprot
Match: M5WVU2_PRUPE (RING-type domain-containing protein n=7 Tax=Prunus TaxID=3754 RepID=M5WVU2_PRUPE)

HSP 1 Score: 66.6 bits (161), Expect = 8.700e-10
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0
Query:  197 PTSEHTSDDCGGLMTSYTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCR 259
            P   +T+D      + +TECAICL+EF AGDEI  LP CGH FH+  C+  WLR+H+ +CP+CR
Sbjct:   92 PKLTYTAD----CTSKFTECAICLTEFAAGDEIRELPQCGHRFHVA-CIDVWLRSHS-SCPSCR 149          
BLAST of Gchil7409.t1 vs. uniprot
Match: UPI0010362780 (RING-H2 finger protein ATL8 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010362780)

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-9
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  197 PTSEHTSDDCGGLMTSYTECAICLSEFEAGDEITALP-CGHMFHLTGCVREWLRNHARTCPTCRADICAPSC 267
            P   +T DD G     +++CAICLSEF AGDEI  LP CGH FH+  C+  WL +H+ +CP+CR  + A  C
Sbjct:   87 PKLTYTVDDAG----KFSDCAICLSEFLAGDEIRVLPQCGHGFHVA-CIDTWLGSHS-SCPSCRQLLVASRC 152          
The following BLAST results are available for this feature:
BLAST of Gchil7409.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ID20_9FLOR4.540e-11556.23RING-H2 finger protein ATL80 n=1 Tax=Gracilariopsi... [more]
R7QBY7_CHOCR2.200e-4955.31RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A7J0DII4_9ERIC3.050e-1254.84RING/U-box superfamily protein n=1 Tax=Actinidia r... [more]
A0A2R6R3R5_ACTCC4.950e-1254.84RING-H2 finger protein n=1 Tax=Actinidia chinensis... [more]
A0A445BRR9_ARAHY1.970e-1047.95RING-type domain-containing protein n=3 Tax=Arachi... [more]
A0A7S1YGP6_9STRA4.710e-1044.78Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A164XST4_DAUCS4.870e-1041.24RING-type domain-containing protein n=1 Tax=Daucus... [more]
A0A484L9A5_9ASTE7.060e-1051.67RING-type domain-containing protein n=3 Tax=Cuscut... [more]
M5WVU2_PRUPE8.700e-1051.56RING-type domain-containing protein n=7 Tax=Prunus... [more]
UPI00103627801.200e-948.61RING-H2 finger protein ATL8 n=1 Tax=Camellia sinen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 216..258
e-value: 2.6E-5
score: 33.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 215..259
e-value: 6.7E-14
score: 52.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 216..259
score: 11.707369
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 192..265
e-value: 4.3E-17
score: 63.1
NoneNo IPR availablePANTHERPTHR45798RING-H2 FINGER PROTEIN ATL61-RELATED-RELATEDcoord: 165..265
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 215..259
e-value: 2.21759E-17
score: 71.9493
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 215..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1070256..1071224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1Gchil7409.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 1070256..1071224 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7409.t1 ID=Gchil7409.t1|Name=Gchil7409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MASEASPSSRRWTSRLFHFFPHRRRRTHDSQRVSVTPSDARMAAVQFRRL
DGVDDAHDNAHAHERLIYSMLADMDAIEDGNMFAIVDRMSDEDDYHVARP
DFQYFQERVRYSNARNAYYFTSRRQTRPNRLTDDYVMEFRRNVRMPRSAA
VGLTTDPNRFDCAASDDQIDALPTIIIEKGDTRSIKEMFDRFRDDDPTSE
HTSDDCGGLMTSYTECAICLSEFEAGDEITALPCGHMFHLTGCVREWLRN
HARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD