Gchil7409.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7409.t1
Unique NameGchil7409.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1070256..1071224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog208960.XP_007270725.1
PFAMsPA,zf-RING_11,zf-RING_2
Max annot lvl4751|Fungi
KEGG koko:K15692,ko:K15706
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0019538,GO:0019787,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Evalue4.76e-10
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,39J80@33154|Opisthokonta,3Q3JB@4751|Fungi,3V0US@5204|Basidiomycota,226GF@155619|Agaricomycetes,3H2T4@355688|Agaricomycetes incertae sedis
EC2.3.2.27
DescriptionPA domain
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7409Gchil7409Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1070256..1071224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1Gchil7409.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1070256..1071224 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1.start1Gchil7409.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1070256..1070258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1.CDS1Gchil7409.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1070256..1070381 +
Gchil7409.t1.CDS2Gchil7409.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1070490..1071224 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1.exon1Gchil7409.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1070256..1070381 +
Gchil7409.t1.exon2Gchil7409.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1070490..1071224 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1.intron1Gchil7409.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1070382..1070489 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7409.t1.stop1Gchil7409.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1071222..1071224 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7409.t1 ID=Gchil7409.t1|Name=Gchil7409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MASEASPSSRRWTSRLFHFFPHRRRRTHDSQRVSVTPSDARMAAVQFRRL
DGVDDAHDNAHAHERLIYSMLADMDAIEDGNMFAIVDRMSDEDDYHVARP
DFQYFQERVRYSNARNAYYFTSRRQTRPNRLTDDYVMEFRRNVRMPRSAA
VGLTTDPNRFDCAASDDQIDALPTIIIEKGDTRSIKEMFDRFRDDDPTSE
HTSDDCGGLMTSYTECAICLSEFEAGDEITALPCGHMFHLTGCVREWLRN
HARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT*
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spliced messenger RNA

>Gchil7409.t1 ID=Gchil7409.t1|Name=Gchil7409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000007_pilon:1070256..1071224+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGAGGCCTCGCCCTCTTCGCGCCGCTGGACTTCCCGTCTCTT
CCACTTTTTTCCCCATCGACGCCGCCGCACACATGACTCGCAGCGCGTGT
CGGTCACCCCCTCCGACGCTCGAATGGCTGCCGTCCAATTTAGAAGGCTG
GATGGCGTTGACGATGCACATGATAATGCTCACGCGCACGAGCGCCTCAT
ATACTCTATGCTAGCTGACATGGACGCCATCGAGGACGGCAATATGTTTG
CTATTGTCGACAGAATGTCCGACGAGGACGACTATCATGTTGCACGACCC
GACTTTCAGTACTTTCAAGAGCGCGTGCGCTACAGCAACGCCAGAAACGC
TTACTACTTTACTAGCAGGCGTCAAACGCGCCCGAACAGACTCACAGATG
ATTATGTAATGGAGTTCCGCCGCAATGTGCGCATGCCGCGCAGCGCCGCC
GTGGGCCTAACAACCGACCCGAATCGCTTCGACTGCGCTGCAAGTGACGA
TCAGATCGATGCGCTCCCAACTATCATCATAGAGAAAGGCGACACAAGAT
CCATCAAAGAGATGTTTGACAGATTCCGTGACGACGATCCTACCAGCGAG
CACACATCCGATGACTGCGGTGGACTTATGACAAGTTACACCGAGTGCGC
CATATGCTTGAGTGAGTTTGAAGCTGGCGACGAGATTACAGCCCTGCCGT
GTGGACATATGTTCCACCTCACCGGCTGCGTCCGAGAATGGCTGCGAAAC
CATGCCAGAACTTGTCCCACATGTCGAGCCGATATCTGTGCACCTTCGTG
CGGCTCAGACGACGTTAACTCGCACTCGGCTACTATGGCTACTTCAGAAG
ACCTCACATAA
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protein sequence of Gchil7409.t1

>Gchil7409.t1 ID=Gchil7409.t1|Name=Gchil7409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MASEASPSSRRWTSRLFHFFPHRRRRTHDSQRVSVTPSDARMAAVQFRRL
DGVDDAHDNAHAHERLIYSMLADMDAIEDGNMFAIVDRMSDEDDYHVARP
DFQYFQERVRYSNARNAYYFTSRRQTRPNRLTDDYVMEFRRNVRMPRSAA
VGLTTDPNRFDCAASDDQIDALPTIIIEKGDTRSIKEMFDRFRDDDPTSE
HTSDDCGGLMTSYTECAICLSEFEAGDEITALPCGHMFHLTGCVREWLRN
HARTCPTCRADICAPSCGSDDVNSHSATMATSEDLT*
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mRNA from alignment at tig00000007_pilon:1070256..1071224+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7409.t1 ID=Gchil7409.t1|Name=Gchil7409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000007_pilon:1070256..1071224+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCCGAGGCCTCGCCCTCTTCGCGCCGCTGGACTTCCCGTCTCTT
CCACTTTTTTCCCCATCGACGCCGCCGCACACATGACTCGCAGCGCGTGT
CGGTCACCCCCTCCGACGCTCGAATGGTACGTCGTTCGAGGCGCGACCGT
CATAGACGCCCCTCCGACGCCCCTTCTCATCCCACTCCTATAACTCACCT
GCAGTCTAACTCAACGCCTACCTTACCGTCACAGGCTGCCGTCCAATTTA
GAAGGCTGGATGGCGTTGACGATGCACATGATAATGCTCACGCGCACGAG
CGCCTCATATACTCTATGCTAGCTGACATGGACGCCATCGAGGACGGCAA
TATGTTTGCTATTGTCGACAGAATGTCCGACGAGGACGACTATCATGTTG
CACGACCCGACTTTCAGTACTTTCAAGAGCGCGTGCGCTACAGCAACGCC
AGAAACGCTTACTACTTTACTAGCAGGCGTCAAACGCGCCCGAACAGACT
CACAGATGATTATGTAATGGAGTTCCGCCGCAATGTGCGCATGCCGCGCA
GCGCCGCCGTGGGCCTAACAACCGACCCGAATCGCTTCGACTGCGCTGCA
AGTGACGATCAGATCGATGCGCTCCCAACTATCATCATAGAGAAAGGCGA
CACAAGATCCATCAAAGAGATGTTTGACAGATTCCGTGACGACGATCCTA
CCAGCGAGCACACATCCGATGACTGCGGTGGACTTATGACAAGTTACACC
GAGTGCGCCATATGCTTGAGTGAGTTTGAAGCTGGCGACGAGATTACAGC
CCTGCCGTGTGGACATATGTTCCACCTCACCGGCTGCGTCCGAGAATGGC
TGCGAAACCATGCCAGAACTTGTCCCACATGTCGAGCCGATATCTGTGCA
CCTTCGTGCGGCTCAGACGACGTTAACTCGCACTCGGCTACTATGGCTAC
TTCAGAAGACCTCACATAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1070256..1071224+

>Gchil7409.t1 ID=Gchil7409.t1|Name=Gchil7409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000007_pilon:1070256..1071224+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCCGAGGCCTCGCCCTCTTCGCGCCGCTGGACTTCCCGTCTCTT
CCACTTTTTTCCCCATCGACGCCGCCGCACACATGACTCGCAGCGCGTGT
CGGTCACCCCCTCCGACGCTCGAATGGCTGCCGTCCAATTTAGAAGGCTG
GATGGCGTTGACGATGCACATGATAATGCTCACGCGCACGAGCGCCTCAT
ATACTCTATGCTAGCTGACATGGACGCCATCGAGGACGGCAATATGTTTG
CTATTGTCGACAGAATGTCCGACGAGGACGACTATCATGTTGCACGACCC
GACTTTCAGTACTTTCAAGAGCGCGTGCGCTACAGCAACGCCAGAAACGC
TTACTACTTTACTAGCAGGCGTCAAACGCGCCCGAACAGACTCACAGATG
ATTATGTAATGGAGTTCCGCCGCAATGTGCGCATGCCGCGCAGCGCCGCC
GTGGGCCTAACAACCGACCCGAATCGCTTCGACTGCGCTGCAAGTGACGA
TCAGATCGATGCGCTCCCAACTATCATCATAGAGAAAGGCGACACAAGAT
CCATCAAAGAGATGTTTGACAGATTCCGTGACGACGATCCTACCAGCGAG
CACACATCCGATGACTGCGGTGGACTTATGACAAGTTACACCGAGTGCGC
CATATGCTTGAGTGAGTTTGAAGCTGGCGACGAGATTACAGCCCTGCCGT
GTGGACATATGTTCCACCTCACCGGCTGCGTCCGAGAATGGCTGCGAAAC
CATGCCAGAACTTGTCCCACATGTCGAGCCGATATCTGTGCACCTTCGTG
CGGCTCAGACGACGTTAACTCGCACTCGGCTACTATGGCTACTTCAGAAG
ACCTCACATAA
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