Gchil3380.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil3380.t1
Unique Name	Gchil3380.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	271

Homology

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BLAST of Gchil3380.t1 vs. uniprot
Match: A0A2V3IIW7_9FLOR (Protein unc-45-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW7_9FLOR)

HSP 1 Score: 286 bits (732), Expect = 8.810e-94
Identity = 153/271 (56.46%), Postives = 194/271 (71.59%), Query Frame = 0

Query:    5 SLPGHASGLALESI----GPNPNLGYTVSKPCPKPDAIVTSRGDVVSVSVKYPDKRPSMF-SFIIGEKQAKPWVQELATGIAINSTSTLLQDNNQICSLTVTSITRTPLRSKKEFQARADELRKEGNDAFRSANKFKDYKSALLIYAKALDASRAAADPARIATVRSNIAMCHLRMSHWVNVIADCDALEKPDAKSFYRRSQANIELDAIIRAIRNLRSARRLVPGDALVEKETTRVENQAVEVLNKRRQNFAETYSVLLQSPLFKQPVLD 270
            S+  H  G + ES     GP+ NL YTV KP    D  V+SRGDVVSV +++ DK  S+  SFIIG KQAKPWVQELATG+A+N+TS L   + Q+C++TVT+IT TP  S  E + +ADE+R+EGN AF++A  FKDY  A+L+Y KALDAS  A D  R A  RSN+AMCHL+   W+NVIAD DAL  PDAK+FYRR+QA IE D ++ +IR++R A  LVP D  V +E  R+E ++ EVL KRRQ FAETYS +LQSP+FKQPV+D
Sbjct:    2 SVTNHTEGNSTESPLSVPGPDINLSYTVLKPSVTGDGDVSSRGDVVSVRIQFTDKPKSLIISFIIGRKQAKPWVQELATGLAVNATSILKHQDKQVCTVTVTAITPTPHLSADELRTKADEVRQEGNAAFKAAVTFKDYTKAILLYYKALDASLNAGDNERAAKARSNLAMCHLKRQEWINVIADVDALPNPDAKAFYRRAQARIEFDDVVGSIRDMRVAASLVPDDKFVVQEAARIEKESTEVLLKRRQQFAETYSNMLQSPVFKQPVMD 272

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BLAST of Gchil3380.t1 vs. uniprot
Match: A0A138ZY79_GONPJ (PPIase cyclophilin-type domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZY79_GONPJ)

HSP 1 Score: 58.2 bits (139), Expect = 4.160e-6
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 0

Query:  118 ADELRKEGNDAFRSANKFKDYKSALLIYAKAL-------DASRAAADPARIATVRS-------NIAMCHLRMSHWVNVIADCDALEKPD---------AKSFYRRSQANIELDAIIRAIRNLRSARRLVPGDALVEKETTRVENQAVEVLNKRRQNFAETYS 256
            A +++  GND F+      D  +AL  YAKAL       D     A  + + T+RS       N A CHL+ S +   I  C A+ + +         AK+ +RR  A  +LD    A+++L  AR+L PGD L+E+E    +       +K+++ FA+ ++
Sbjct:  218 AGKIKAAGNDYFKKG----DLGTALAKYAKALRYTDYILDNPPLDAAESHLTTLRSLKASSLLNSASCHLKQSKFRLCIETCTAVLQLEGEGVTSADRAKALFRRGSARSKLDEFEEAVKDLEEARKLEPGDKLIEREVIVAKAAQKAEKDKQKKAFAKMFA 375

The following BLAST results are available for this feature:

BLAST of Gchil3380.t1 vs. uniprot

BLAST of Gchil3380.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IIW7_9FLOR	8.810e-94	56.46	Protein unc-45-like n=1 Tax=Gracilariopsis chorda ...	[more]
A0A138ZY79_GONPJ	4.160e-6	29.63	PPIase cyclophilin-type domain-containing protein ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 117..256 e-value: 1.4E-17 score: 65.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 134..229
None	No IPR available	PANTHER	PTHR46423	RNA POLYMERASE II-ASSOCIATED PROTEIN 3	coord: 115..239

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:696185..696997 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3380.t1	Gchil3380.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000168_pilon 696185..696997 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil3380.t1 ID=Gchil3380.t1|Name=Gchil3380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MGVTSLPGHASGLALESIGPNPNLGYTVSKPCPKPDAIVTSRGDVVSVSV
KYPDKRPSMFSFIIGEKQAKPWVQELATGIAINSTSTLLQDNNQICSLTV
TSITRTPLRSKKEFQARADELRKEGNDAFRSANKFKDYKSALLIYAKALD
ASRAAADPARIATVRSNIAMCHLRMSHWVNVIADCDALEKPDAKSFYRRS
QANIELDAIIRAIRNLRSARRLVPGDALVEKETTRVENQAVEVLNKRRQN
FAETYSVLLQSPLFKQPVLD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf