Gchil3380.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3380.t1
Unique Name	Gchil3380.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	271

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:696185..696997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	115417.EPrPW00000015553
Max annot lvl	121069\|Pythiales
Evalue	5.06e-05
EggNOG OGs	COG0652@1\|root,KOG0546@2759\|Eukaryota,1MGIW@121069\|Pythiales
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3380	Gchil3380	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 696185..696997 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3380.t1.start1	Gchil3380.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 696185..696187 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3380.t1.CDS1	Gchil3380.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 696185..696997 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3380.t1.exon1	Gchil3380.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 696185..696997 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3380.t1.stop1	Gchil3380.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 696995..696997 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3380.t1	Gchil3380.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 696185..696997 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:696185..696997+
coding sequence from alignment at tig00000168_pilon:696185..696997+

mRNA sequence

>Gchil3380.t1 ID=Gchil3380.t1|Name=Gchil3380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=271bp
MGVTSLPGHASGLALESIGPNPNLGYTVSKPCPKPDAIVTSRGDVVSVSV
KYPDKRPSMFSFIIGEKQAKPWVQELATGIAINSTSTLLQDNNQICSLTV
TSITRTPLRSKKEFQARADELRKEGNDAFRSANKFKDYKSALLIYAKALD
ASRAAADPARIATVRSNIAMCHLRMSHWVNVIADCDALEKPDAKSFYRRS
QANIELDAIIRAIRNLRSARRLVPGDALVEKETTRVENQAVEVLNKRRQN
FAETYSVLLQSPLFKQPVLD*

spliced messenger RNA

>Gchil3380.t1 ID=Gchil3380.t1|Name=Gchil3380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000168_pilon:696185..696997+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTAACTTCACTTCCTGGTCATGCGTCGGGACTTGCTCTTGAGAG
TATTGGGCCTAACCCGAATCTGGGCTATACAGTGTCAAAGCCCTGCCCGA
AACCAGATGCAATCGTAACCAGTCGAGGCGATGTTGTCTCAGTATCGGTG
AAGTATCCGGATAAACGACCTAGTATGTTTTCTTTCATCATTGGTGAAAA
GCAGGCGAAACCATGGGTTCAGGAACTTGCCACTGGTATCGCGATCAATT
CCACCTCGACTCTTTTGCAGGACAACAACCAAATATGTTCGCTCACCGTA
ACTTCCATAACAAGAACTCCTCTTCGTTCAAAGAAGGAGTTTCAAGCACG
TGCAGATGAACTACGAAAAGAAGGAAATGATGCTTTCAGATCCGCAAACA
AGTTCAAGGACTACAAAAGCGCTCTTCTTATTTACGCAAAGGCTCTGGAT
GCCAGCCGAGCCGCTGCTGATCCCGCACGCATTGCGACTGTGCGCTCAAA
TATTGCAATGTGTCATCTAAGGATGAGCCATTGGGTGAATGTCATTGCAG
ATTGCGATGCTCTGGAAAAACCGGACGCAAAGAGCTTTTATCGTCGTTCA
CAAGCAAACATTGAACTAGATGCAATCATCCGAGCAATCCGTAATCTGCG
CAGTGCCCGACGTTTGGTGCCCGGTGACGCGCTTGTCGAAAAAGAGACAA
CCCGGGTTGAAAACCAGGCAGTTGAGGTTCTCAATAAGCGACGTCAAAAC
TTTGCAGAAACCTACAGCGTTTTGCTGCAAAGCCCACTCTTCAAACAACC
AGTACTAGATTAA

protein sequence of Gchil3380.t1

>Gchil3380.t1 ID=Gchil3380.t1|Name=Gchil3380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MGVTSLPGHASGLALESIGPNPNLGYTVSKPCPKPDAIVTSRGDVVSVSV
KYPDKRPSMFSFIIGEKQAKPWVQELATGIAINSTSTLLQDNNQICSLTV
TSITRTPLRSKKEFQARADELRKEGNDAFRSANKFKDYKSALLIYAKALD
ASRAAADPARIATVRSNIAMCHLRMSHWVNVIADCDALEKPDAKSFYRRS
QANIELDAIIRAIRNLRSARRLVPGDALVEKETTRVENQAVEVLNKRRQN
FAETYSVLLQSPLFKQPVLD*

mRNA from alignment at tig00000168_pilon:696185..696997+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3380.t1 ID=Gchil3380.t1|Name=Gchil3380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000168_pilon:696185..696997+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGTAACTTCACTTCCTGGTCATGCGTCGGGACTTGCTCTTGAGAG
TATTGGGCCTAACCCGAATCTGGGCTATACAGTGTCAAAGCCCTGCCCGA
AACCAGATGCAATCGTAACCAGTCGAGGCGATGTTGTCTCAGTATCGGTG
AAGTATCCGGATAAACGACCTAGTATGTTTTCTTTCATCATTGGTGAAAA
GCAGGCGAAACCATGGGTTCAGGAACTTGCCACTGGTATCGCGATCAATT
CCACCTCGACTCTTTTGCAGGACAACAACCAAATATGTTCGCTCACCGTA
ACTTCCATAACAAGAACTCCTCTTCGTTCAAAGAAGGAGTTTCAAGCACG
TGCAGATGAACTACGAAAAGAAGGAAATGATGCTTTCAGATCCGCAAACA
AGTTCAAGGACTACAAAAGCGCTCTTCTTATTTACGCAAAGGCTCTGGAT
GCCAGCCGAGCCGCTGCTGATCCCGCACGCATTGCGACTGTGCGCTCAAA
TATTGCAATGTGTCATCTAAGGATGAGCCATTGGGTGAATGTCATTGCAG
ATTGCGATGCTCTGGAAAAACCGGACGCAAAGAGCTTTTATCGTCGTTCA
CAAGCAAACATTGAACTAGATGCAATCATCCGAGCAATCCGTAATCTGCG
CAGTGCCCGACGTTTGGTGCCCGGTGACGCGCTTGTCGAAAAAGAGACAA
CCCGGGTTGAAAACCAGGCAGTTGAGGTTCTCAATAAGCGACGTCAAAAC
TTTGCAGAAACCTACAGCGTTTTGCTGCAAAGCCCACTCTTCAAACAACC
AGTACTAGATTAA

Coding sequence (CDS) from alignment at tig00000168_pilon:696185..696997+

>Gchil3380.t1 ID=Gchil3380.t1|Name=Gchil3380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000168_pilon:696185..696997+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGTAACTTCACTTCCTGGTCATGCGTCGGGACTTGCTCTTGAGAG
TATTGGGCCTAACCCGAATCTGGGCTATACAGTGTCAAAGCCCTGCCCGA
AACCAGATGCAATCGTAACCAGTCGAGGCGATGTTGTCTCAGTATCGGTG
AAGTATCCGGATAAACGACCTAGTATGTTTTCTTTCATCATTGGTGAAAA
GCAGGCGAAACCATGGGTTCAGGAACTTGCCACTGGTATCGCGATCAATT
CCACCTCGACTCTTTTGCAGGACAACAACCAAATATGTTCGCTCACCGTA
ACTTCCATAACAAGAACTCCTCTTCGTTCAAAGAAGGAGTTTCAAGCACG
TGCAGATGAACTACGAAAAGAAGGAAATGATGCTTTCAGATCCGCAAACA
AGTTCAAGGACTACAAAAGCGCTCTTCTTATTTACGCAAAGGCTCTGGAT
GCCAGCCGAGCCGCTGCTGATCCCGCACGCATTGCGACTGTGCGCTCAAA
TATTGCAATGTGTCATCTAAGGATGAGCCATTGGGTGAATGTCATTGCAG
ATTGCGATGCTCTGGAAAAACCGGACGCAAAGAGCTTTTATCGTCGTTCA
CAAGCAAACATTGAACTAGATGCAATCATCCGAGCAATCCGTAATCTGCG
CAGTGCCCGACGTTTGGTGCCCGGTGACGCGCTTGTCGAAAAAGAGACAA
CCCGGGTTGAAAACCAGGCAGTTGAGGTTCTCAATAAGCGACGTCAAAAC
TTTGCAGAAACCTACAGCGTTTTGCTGCAAAGCCCACTCTTCAAACAACC
AGTACTAGATTAA