Gchil3294.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3294.t1
Unique NameGchil3294.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:59154..60180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004989266.1
PFAMszf-C2H2,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K09228,ko:K19871
Evalue5.25e-07
EggNOG OGsKOG1074@1|root,KOG1074@2759|Eukaryota
Descriptioninductive cell-cell signaling
COG categoryA
BRITEko00000,ko03000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3294Gchil3294Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 59154..60180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3294.t1Gchil3294.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 59154..60180 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3294.t1.start1Gchil3294.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 59154..59156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3294.t1.CDS1Gchil3294.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 59154..59829 +
Gchil3294.t1.CDS2Gchil3294.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 59924..60180 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3294.t1.exon1Gchil3294.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 59154..59829 +
Gchil3294.t1.exon2Gchil3294.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 59924..60180 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3294.t1.intron1Gchil3294.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 59830..59923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3294.t1.stop1Gchil3294.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 60178..60180 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3294.t1 ID=Gchil3294.t1|Name=Gchil3294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=311bp
MQRSAPSCRDSIANEPTTLSGSISSAVTHRRAPCMLGTQAMTLPAPSALH
HHPSTSLHPRPSPPPLSIPPCTLRISQAVNEHTPPHTMTSSHHRPSYAHQ
VMAPQPSYGSLPHTYTSEPAQYNDRRVVQTSSRRVAIDSLLDARSHVESG
IGCASVLPPIQSRIAPMRAHPNMYNTHNHGNQVYQRQMRHGKENRVRKPT
SKQNRVIPCPYRDCDKTFSRNSNLKVHMRIHTGTYPFGCHLCERKFMWSS
SLHWHLKWHEKQEPQDTSRGRTCNCPCPVHGSTSPVSRTSAGDAREEERT
IASPTRNSSS*
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spliced messenger RNA

>Gchil3294.t1 ID=Gchil3294.t1|Name=Gchil3294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000168_pilon:59154..60180+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGAAGCGCTCCTTCGTGCCGCGATTCCATCGCCAATGAACCCAC
CACTCTGTCGGGCTCCATCTCCTCGGCGGTGACGCACCGCCGAGCGCCAT
GCATGCTGGGCACACAGGCCATGACGCTTCCGGCACCTTCAGCACTTCAC
CATCACCCATCGACGTCGCTTCACCCCCGTCCATCACCGCCGCCATTATC
GATTCCACCATGCACATTACGCATCTCTCAAGCGGTGAATGAACACACAC
CACCCCATACCATGACGTCGTCGCATCATCGACCATCGTATGCGCATCAG
GTCATGGCGCCGCAACCGTCGTATGGATCGCTTCCGCACACGTACACAAG
CGAGCCCGCTCAGTATAATGATCGCCGTGTGGTTCAAACATCCTCCCGAA
GGGTTGCTATCGACTCTTTGCTCGACGCTAGGTCGCATGTGGAGAGCGGT
ATCGGGTGTGCATCTGTGTTGCCTCCCATTCAGTCGCGTATCGCACCCAT
GCGTGCTCACCCTAACATGTACAATACTCACAACCACGGCAATCAGGTAT
ATCAAAGACAAATGCGTCACGGAAAGGAAAACCGTGTGCGAAAACCAACA
AGCAAACAGAACCGTGTGATTCCGTGTCCGTACCGTGACTGCGACAAGAC
ATTTTCGCGAAACTCTAACTTGAAAGTGCACATGAGAATTCACACGGGCA
CGTATCCGTTCGGGTGCCATCTGTGCGAACGAAAGTTCATGTGGTCTTCC
AGTCTGCACTGGCATCTCAAGTGGCATGAGAAGCAGGAGCCGCAAGACAC
AAGCAGAGGTCGAACGTGCAACTGTCCGTGCCCGGTGCATGGTAGCACGT
CGCCCGTGTCGCGCACAAGCGCTGGAGACGCACGCGAGGAAGAGCGCACA
ATAGCTTCACCAACAAGAAATAGCTCATCGTAG
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protein sequence of Gchil3294.t1

>Gchil3294.t1 ID=Gchil3294.t1|Name=Gchil3294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=311bp
MQRSAPSCRDSIANEPTTLSGSISSAVTHRRAPCMLGTQAMTLPAPSALH
HHPSTSLHPRPSPPPLSIPPCTLRISQAVNEHTPPHTMTSSHHRPSYAHQ
VMAPQPSYGSLPHTYTSEPAQYNDRRVVQTSSRRVAIDSLLDARSHVESG
IGCASVLPPIQSRIAPMRAHPNMYNTHNHGNQVYQRQMRHGKENRVRKPT
SKQNRVIPCPYRDCDKTFSRNSNLKVHMRIHTGTYPFGCHLCERKFMWSS
SLHWHLKWHEKQEPQDTSRGRTCNCPCPVHGSTSPVSRTSAGDAREEERT
IASPTRNSSS*
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mRNA from alignment at tig00000168_pilon:59154..60180+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3294.t1 ID=Gchil3294.t1|Name=Gchil3294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1027bp|location=Sequence derived from alignment at tig00000168_pilon:59154..60180+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGAAGCGCTCCTTCGTGCCGCGATTCCATCGCCAATGAACCCAC
CACTCTGTCGGGCTCCATCTCCTCGGCGGTGACGCACCGCCGAGCGCCAT
GCATGCTGGGCACACAGGCCATGACGCTTCCGGCACCTTCAGCACTTCAC
CATCACCCATCGACGTCGCTTCACCCCCGTCCATCACCGCCGCCATTATC
GATTCCACCATGCACATTACGCATCTCTCAAGCGGTGAATGAACACACAC
CACCCCATACCATGACGTCGTCGCATCATCGACCATCGTATGCGCATCAG
GTCATGGCGCCGCAACCGTCGTATGGATCGCTTCCGCACACGTACACAAG
CGAGCCCGCTCAGTATAATGATCGCCGTGTGGTTCAAACATCCTCCCGAA
GGGTTGCTATCGACTCTTTGCTCGACGCTAGGTCGCATGTGGAGAGCGGT
ATCGGGTGTGCATCTGTGTTGCCTCCCATTCAGTCGCGTATCGCACCCAT
GCGTGCTCACCCTAACATGTACAATACTCACAACCACGGCAATCAGGTAT
ATCAAAGACAAATGCGTCACGGAAAGGAAAACCGTGTGCGAAAACCAACA
AGCAAACAGAACCGTGTGATTCCGTGTCCGTACCGTGACTGCGACAAGAC
ATTTTCGCGAAACTCTAACTTGAAAGGTAAGTAAGTGCATGTTGATTGCA
TGCGAAACTCGAAACGCAGAAGGAATATATTCTAACCGTGCACGGTTTTC
GTTGTGTTTATTACGCATAGTGCACATGAGAATTCACACGGGCACGTATC
CGTTCGGGTGCCATCTGTGCGAACGAAAGTTCATGTGGTCTTCCAGTCTG
CACTGGCATCTCAAGTGGCATGAGAAGCAGGAGCCGCAAGACACAAGCAG
AGGTCGAACGTGCAACTGTCCGTGCCCGGTGCATGGTAGCACGTCGCCCG
TGTCGCGCACAAGCGCTGGAGACGCACGCGAGGAAGAGCGCACAATAGCT
TCACCAACAAGAAATAGCTCATCGTAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:59154..60180+

>Gchil3294.t1 ID=Gchil3294.t1|Name=Gchil3294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000168_pilon:59154..60180+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGAAGCGCTCCTTCGTGCCGCGATTCCATCGCCAATGAACCCAC
CACTCTGTCGGGCTCCATCTCCTCGGCGGTGACGCACCGCCGAGCGCCAT
GCATGCTGGGCACACAGGCCATGACGCTTCCGGCACCTTCAGCACTTCAC
CATCACCCATCGACGTCGCTTCACCCCCGTCCATCACCGCCGCCATTATC
GATTCCACCATGCACATTACGCATCTCTCAAGCGGTGAATGAACACACAC
CACCCCATACCATGACGTCGTCGCATCATCGACCATCGTATGCGCATCAG
GTCATGGCGCCGCAACCGTCGTATGGATCGCTTCCGCACACGTACACAAG
CGAGCCCGCTCAGTATAATGATCGCCGTGTGGTTCAAACATCCTCCCGAA
GGGTTGCTATCGACTCTTTGCTCGACGCTAGGTCGCATGTGGAGAGCGGT
ATCGGGTGTGCATCTGTGTTGCCTCCCATTCAGTCGCGTATCGCACCCAT
GCGTGCTCACCCTAACATGTACAATACTCACAACCACGGCAATCAGGTAT
ATCAAAGACAAATGCGTCACGGAAAGGAAAACCGTGTGCGAAAACCAACA
AGCAAACAGAACCGTGTGATTCCGTGTCCGTACCGTGACTGCGACAAGAC
ATTTTCGCGAAACTCTAACTTGAAAGTGCACATGAGAATTCACACGGGCA
CGTATCCGTTCGGGTGCCATCTGTGCGAACGAAAGTTCATGTGGTCTTCC
AGTCTGCACTGGCATCTCAAGTGGCATGAGAAGCAGGAGCCGCAAGACAC
AAGCAGAGGTCGAACGTGCAACTGTCCGTGCCCGGTGCATGGTAGCACGT
CGCCCGTGTCGCGCACAAGCGCTGGAGACGCACGCGAGGAAGAGCGCACA
ATAGCTTCACCAACAAGAAATAGCTCATCGTAG
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