Gchil8491.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8491.t1
Unique NameGchil8491.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length385
Homology
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BLAST of Gchil8491.t1 vs. uniprot
Match: A0A2V3IZ29_9FLOR (POC1 centriolar protein-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ29_9FLOR)

HSP 1 Score: 631 bits (1627), Expect = 2.840e-226
Identity = 302/378 (79.89%), Postives = 335/378 (88.62%), Query Frame = 0 
Query:    1 MSSDEPPPPQIAARTLRAFTSPVSAISAGHAAFVFSCSSAADRLCLHDTSSGQQVISLHVPAQRPSHIAVAADGAKCAFATITGAVYIWDMLYPTSMESFRPSDDHPSPVTDMEWHPRGHVLAVATESGQLYLWDHVVGALLYPLPAHSGRISAVRWTAHGRLLVSVGASDALLRVWNPRNVNNLADVSAETEHSTPVKWHARGITCLDTLHDMSRIAITGGPDGSVLLSVLKPESQCGVFASMNAHQSSVSCVRIAPIGSPRPLRSVSADVNGSVHLFDMDRRLPMGKFSHGNDPVVQLEFSHHADVLFSAAGHTVMAWDARVAPEEQPPITFGTDAHTVNAFALLNSGANLVTACQDGVLRTYDMRYPSGDPPPLP 378
            MS D   PPQI +RTLRAF++P SA+  GHA FVFSCS AAD+L LHDT+SG ++ISL  PAQRPS IAV+ADG KCAFAT TGAVYIWD+LYPTSMESFRP +D+ SPVTD+ WHPRGHVLAVATE+G +YLWDHVVGALL+PLPAH+G ISAVRWTAHGRLLV+VGASD LLRVWNPRNVNNLADVSA +EH+TP KWH  GITCLDTL DMSR+AITG PDGSVLLSVLKPESQCGVFASMN+H + V CVR APIGSPRPLRS SA  +GS+HLFDM+RRLPMGKFSH N PVVQLEFSHHADVLFSAAG TV+AWDARVAPEE+PPITFG   H VN+FAL+NSGANLVTAC+DG+LRTYDMRYPSG+PPPLP
Sbjct:    1 MSCDGDAPPQIPSRTLRAFSAPASALQNGHAGFVFSCSRAADKLSLHDTNSGDRIISLDAPAQRPSRIAVSADGVKCAFATATGAVYIWDVLYPTSMESFRPDEDNSSPVTDLAWHPRGHVLAVATEAGNIYLWDHVVGALLFPLPAHTGSISAVRWTAHGRLLVTVGASDTLLRVWNPRNVNNLADVSASSEHTTPAKWHVGGITCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNSHDAPVHCVRFAPIGSPRPLRSASAADDGSIHLFDMERRLPMGKFSHANKPVVQLEFSHHADVLFSAAGDTVIAWDARVAPEEEPPITFGAHQHAVNSFALVNSGANLVTACEDGMLRTYDMRYPSGEPPPLP 378
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BLAST of Gchil8491.t1 vs. uniprot
Match: UPI000B45F0F5 (WD repeat and SOCS box-containing protein 1-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45F0F5)

HSP 1 Score: 58.9 bits (141), Expect = 7.160e-6
Identity = 59/259 (22.78%), Postives = 93/259 (35.91%), Query Frame = 0 
Query:  121 VLAVATESGQLYLWDHVVGALLYPLPAHSGRISAVRWTAHGRLLVSVGASDALLRVWNPRNVNNLADVSAETEHSTPVKWHARGITCLDTLHDMSRIAITGGPDGSVLLSVLKPESQCGVFASMNAHQSSVSCVRIAPIGSPRPLRSVSADVNGSVHLFDMDRRLPMGKFSHGNDPVVQLEFSHHADVLFSAAGHT-VMAWD----------ARVAPEEQPPITFGTDAHTVNAFALLNSGANLVTACQDGVLRTYDMR 368
            +LA    SG++  WD   G LL  L  H   I  + +     LL    + D  L+VW+  +  N+                        TL   + +A                          N+ + S +C  IA +G+           N SV LFDM       +     + V   +FS    +L +A+  T V+ WD            + PE +P    G + H +   +  N+G  LVT C DG +R +D++
Sbjct:  170 ILATGLLSGKIKTWDCNTGNLLMELSDHRDSIKEINFAPDRSLLFVSASRDGTLKVWDLNDDGNMTK----------------------TLRGKASVA--------------------------NSCKWSPNCKMIASVGN-----------NKSVALFDMSHENKFTQLKGHYNDVCSCDFSPDGALLATASYDTRVILWDPYTGDAIAELGHMFPEPRPIFAGGANDHYLRDVSFCNNGLQLVTVCDDGYMRVWDLQ 369
The following BLAST results are available for this feature:
BLAST of Gchil8491.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZ29_9FLOR2.840e-22679.89POC1 centriolar protein-like n=1 Tax=Gracilariopsi... [more]
UPI000B45F0F57.160e-622.78WD repeat and SOCS box-containing protein 1-like n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 9..48
e-value: 270.0
score: 1.6
coord: 138..178
e-value: 5.7E-4
score: 29.2
coord: 327..366
e-value: 1.5
score: 15.9
coord: 237..280
e-value: 1.5
score: 15.9
coord: 283..321
e-value: 7.1
score: 11.6
coord: 194..231
e-value: 36.0
score: 7.2
coord: 96..135
e-value: 1.5E-4
score: 31.1
coord: 51..90
e-value: 15.0
score: 9.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 145..187
score: 9.606159
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 103..135
score: 10.809215
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 9..235
e-value: 3.0E-28
score: 100.4
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 236..375
e-value: 3.1E-15
score: 58.2
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 95..159
e-value: 1.4E-7
score: 31.6
NoneNo IPR availablePANTHERPTHR19857MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 12..368
NoneNo IPR availablePANTHERPTHR19857:SF8MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 12..368
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 103..135
score: 9.071966
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 32..368

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:91671..92825 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8491.t1Gchil8491.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000116_pilon 91671..92825 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8491.t1 ID=Gchil8491.t1|Name=Gchil8491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MSSDEPPPPQIAARTLRAFTSPVSAISAGHAAFVFSCSSAADRLCLHDTS
SGQQVISLHVPAQRPSHIAVAADGAKCAFATITGAVYIWDMLYPTSMESF
RPSDDHPSPVTDMEWHPRGHVLAVATESGQLYLWDHVVGALLYPLPAHSG
RISAVRWTAHGRLLVSVGASDALLRVWNPRNVNNLADVSAETEHSTPVKW
HARGITCLDTLHDMSRIAITGGPDGSVLLSVLKPESQCGVFASMNAHQSS
VSCVRIAPIGSPRPLRSVSADVNGSVHLFDMDRRLPMGKFSHGNDPVVQL
EFSHHADVLFSAAGHTVMAWDARVAPEEQPPITFGTDAHTVNAFALLNSG
ANLVTACQDGVLRTYDMRYPSGDPPPLPVEEQSH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR024977Apc4_WD40_dom
IPR011047Quinoprotein_ADH-like_supfam